Guide to the Human Genome
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Name: CSF1 Sequence: fasta or formatted (256aa) NCBI GI: 27262665
Description:

colony stimulating factor 1 isoform c precursor

Referenced in:

Macrophages and Monocytes
Hematopoiesis and Erythrocytes
Receptor Tyrosine Kinases

Other entries for this name:
alt prot [554aa] colony stimulating factor 1 isoform a precursor
alt prot [438aa] colony stimulating factor 1 isoform b precursor
alt prot [554aa] colony stimulating factor 1 isoform a precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         11           2
 C cysteine            3.5          9           1
 D aspartate           5.1         13           2
 E glutamate           8.2         21           2
 F phenylalanine       4.3         11           1
 G glycine             3.9         10           2
 H histidine           2.3          6           1
 I isoleucine          3.5          9           1
 K lysine              4.3         11           2
 L leucine            13.3         34           4
 M methionine          2.0          5           1
 N asparagine          3.5          9           2
 P proline             5.1         13           2
 Q glutamine           7.4         19           1
 R arginine            5.5         14           3
 S serine              9.4         24           3
 T threonine           5.1         13           2
 V valine              6.2         16           1
 W tryptophan          1.2          3           1
 Y tyrosine            2.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   colony stimulating factor 1 isoform c precursor [Hom... 
CSF1                  0.698   colony stimulating factor 1 isoform a precursor [Hom...
CSF1                  0.698   colony stimulating factor 1 isoform b precursor [Hom...
CSF1                  0.698   colony stimulating factor 1 isoform a precursor [Hom...
GLG1                  0.016   golgi apparatus protein 1 isoform 3 
GLG1                  0.016   golgi apparatus protein 1 isoform 1 
LAG3                  0.014   lymphocyte-activation protein 3 precursor 
PDE4DIP               0.012   phosphodiesterase 4D interacting protein isoform 2 [...
PDE4DIP               0.012   phosphodiesterase 4D interacting protein isoform 1 ...
PDE4DIP               0.012   phosphodiesterase 4D interacting protein isoform 4 [...
PDE4DIP               0.012   phosphodiesterase 4D interacting protein isoform 3 [...
LRP8                  0.012   low density lipoprotein receptor-related protein 8 i...
PILRA                 0.012   paired immunoglobulin-like type 2 receptor alpha iso...
LRP8                  0.010   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.010   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.010   low density lipoprotein receptor-related protein 8 i...
TNKS                  0.010   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ZC3H14                0.008   zinc finger CCCH-type containing 14 isoform 3 
ZC3H14                0.008   zinc finger CCCH-type containing 14 isoform 6 [Homo...
ZC3H14                0.008   zinc finger CCCH-type containing 14 isoform 5 [Homo...
ZC3H14                0.008   zinc finger CCCH-type containing 14 isoform 2 
ZC3H14                0.008   zinc finger CCCH-type containing 14 isoform 1 
ABCA10                0.008   ATP-binding cassette, sub-family A, member 10 [Homo...
FAM135B               0.008   hypothetical protein LOC51059 
CD300LG               0.008   CD300 molecule-like family member g 
LOC653513             0.006   PREDICTED: similar to Phosphodiesterase 4D interacti...
TRIO                  0.006   triple functional domain (PTPRF interacting) 
HTR3B                 0.006   5-hydroxytryptamine (serotonin) receptor 3B precursor...
TEX15                 0.006   testis expressed 15 
ABCA9                 0.006   ATP-binding cassette, sub-family A, member 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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