Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CD302 Sequence: fasta or formatted (232aa) NCBI GI: 26892293
Description:

CD302 molecule

Referenced in:

Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         18           4
 C cysteine            3.0          7           1
 D aspartate           9.9         23           3
 E glutamate           6.0         14           3
 F phenylalanine       5.2         12           1
 G glycine             3.9          9           1
 H histidine           2.2          5           1
 I isoleucine          6.9         16           2
 K lysine              6.0         14           2
 L leucine             9.9         23           3
 M methionine          1.7          4           1
 N asparagine          3.9          9           1
 P proline             3.4          8           1
 Q glutamine           3.4          8           1
 R arginine            1.7          4           1
 S serine              6.9         16           2
 T threonine           6.5         15           2
 V valine              6.0         14           2
 W tryptophan          2.6          6           1
 Y tyrosine            3.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD302 molecule 
LY75                  0.130   lymphocyte antigen 75 
PLA2R1                0.097   phospholipase A2 receptor 1 isoform 1 precursor [Hom...
MRC1                  0.084   mannose receptor C type 1 precursor 
MRC1L1                0.084   mannose receptor, C type 1-like 1 
MRC2                  0.081   mannose receptor, C type 2 
COLEC12               0.059   collectin sub-family member 12 
CLEC4C                0.059   C-type lectin domain family 4, member C isoform 2 [H...
CLEC4C                0.059   C-type lectin domain family 4, member C isoform 1 [H...
NCAN                  0.048   chondroitin sulfate proteoglycan 3 
PLA2R1                0.046   phospholipase A2 receptor 1 isoform 2 precursor [Hom...
CLEC4G                0.046   C-type lectin domain family 4, member G 
ACAN                  0.044   aggrecan isoform 1 precursor 
ACAN                  0.037   aggrecan isoform 2 precursor 
CLEC7A                0.037   dendritic cell-associated C-type lectin 1 isoform b ...
KLRC2                 0.037   killer cell lectin-like receptor subfamily C, member...
BCAN                  0.037   brevican isoform 1 
CLEC9A                0.035   C-type lectin domain family 9, member A 
FCER2                 0.035   Fc fragment of IgE, low affinity II, receptor for (C...
CLEC10A               0.033   C-type lectin, superfamily member 14 isoform 2 [Homo...
CLEC7A                0.033   dendritic cell-associated C-type lectin 1 isoform e ...
CLEC7A                0.033   dendritic cell-associated C-type lectin 1 isoform a ...
VCAN                  0.033   versican isoform 2 
VCAN                  0.033   versican isoform 1 
CD69                  0.033   CD69 molecule 
CLEC10A               0.033   C-type lectin, superfamily member 14 isoform 1 [Homo...
KLRC1                 0.031   killer cell lectin-like receptor subfamily C, member...
KLRC1                 0.031   killer cell lectin-like receptor subfamily C, member ...
REG1B                 0.031   regenerating islet-derived 1 beta precursor 
PKD1L2                0.031   polycystin 1-like 2 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press