Search of human proteins with 253314447

Search of human proteins with 253314447

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]
         (228 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]                   467   e-132
gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]                   450   e-127
gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]                   447   e-126
gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]                    430   e-121
gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]                    319   1e-87
gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]                   227   6e-60
gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]                   227   7e-60
gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]                   207   5e-54
gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]           98   5e-21
gi|54607124 RNA binding motif protein 15B [Homo sapiens]               32   0.34 
gi|188528675 slit homolog 1 [Homo sapiens]                             32   0.45 
gi|7657641 TDP-glucose 4,6-dehydratase [Homo sapiens]                  29   2.9  
gi|31657140 insulin receptor-related receptor precursor [Homo sa...    29   3.8  
gi|17017980 kelch-like 4 isoform 2 [Homo sapiens]                      29   3.8  
gi|17017982 kelch-like 4 isoform 1 [Homo sapiens]                      29   3.8  
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    29   3.8  
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    29   3.8  
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    29   3.8  
gi|160420317 filamin A, alpha isoform 2 [Homo sapiens]                 28   5.0  
gi|116063573 filamin A, alpha isoform 1 [Homo sapiens]                 28   5.0  
gi|131889097 cancer susceptibility candidate 1 isoform b [Homo s...    28   5.0  
gi|131889447 cancer susceptibility candidate 1 isoform c [Homo s...    28   5.0  
gi|131888105 cancer susceptibility candidate 1 isoform a [Homo s...    28   5.0  
gi|118498362 kinectin 1 isoform b [Homo sapiens]                       28   6.5  
gi|118498356 kinectin 1 isoform a [Homo sapiens]                       28   6.5  
gi|118498368 kinectin 1 isoform c [Homo sapiens]                       28   6.5  
gi|33620775 kinectin 1 isoform a [Homo sapiens]                        28   6.5  
gi|149588599 membrane-spanning 4-domains, subfamily A, member 15...    28   6.5  
gi|38176300 nestin [Homo sapiens]                                      28   8.5  

>gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]
          Length = 228

 Score =  467 bits (1201), Expect = e-132
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60
           MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK
Sbjct: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60

Query: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEER 120
           QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEER
Sbjct: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEER 120

Query: 121 ENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSED 180
           ENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSED
Sbjct: 121 ENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSED 180

Query: 181 IVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 228
           IVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 181 IVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 228


>gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]
          Length = 261

 Score =  450 bits (1157), Expect = e-127
 Identities = 228/261 (87%), Positives = 228/261 (87%), Gaps = 33/261 (12%)

Query: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60
           MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK
Sbjct: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60

Query: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEER 120
           QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEER
Sbjct: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEER 120

Query: 121 ENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE-------------- 166
           ENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE              
Sbjct: 121 ENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQK 180

Query: 167 -------------------ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQE 207
                              ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQE
Sbjct: 181 LAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQE 240

Query: 208 EEGYLSDFSLEEEEFRLPELD 228
           EEGYLSDFSLEEEEFRLPELD
Sbjct: 241 EEGYLSDFSLEEEEFRLPELD 261


>gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]
          Length = 251

 Score =  447 bits (1150), Expect = e-126
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92

Query: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL
Sbjct: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152

Query: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEE 189
           PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEE
Sbjct: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEE 212

Query: 190 LHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 228
           LHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 213 LHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 251


>gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]
          Length = 284

 Score =  430 bits (1106), Expect = e-121
 Identities = 219/252 (86%), Positives = 219/252 (86%), Gaps = 33/252 (13%)

Query: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92

Query: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL
Sbjct: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152

Query: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE----------------------- 166
           PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE                       
Sbjct: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 212

Query: 167 ----------ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 216
                     ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS
Sbjct: 213 AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 272

Query: 217 LEEEEFRLPELD 228
           LEEEEFRLPELD
Sbjct: 273 LEEEEFRLPELD 284


>gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]
          Length = 236

 Score =  319 bits (818), Expect = 1e-87
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92

Query: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL
Sbjct: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152

Query: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE 166
           PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE
Sbjct: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE 189


>gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]
          Length = 143

 Score =  227 bits (579), Expect = 6e-60
 Identities = 110/111 (99%), Positives = 111/111 (100%)

Query: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60
           MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK
Sbjct: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60

Query: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKL 111
           QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK+
Sbjct: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKV 111



 Score = 77.8 bits (190), Expect = 7e-15
 Identities = 34/36 (94%), Positives = 36/36 (100%)

Query: 193 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 228
           +I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 108 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 143


>gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]
          Length = 116

 Score =  227 bits (578), Expect = 7e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60
           MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK
Sbjct: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60

Query: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110
           QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK
Sbjct: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110


>gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]
          Length = 166

 Score =  207 bits (528), Expect = 5e-54
 Identities = 101/102 (99%), Positives = 102/102 (100%)

Query: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92

Query: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKL 111
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK+
Sbjct: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKV 134



 Score = 77.8 bits (190), Expect = 7e-15
 Identities = 34/36 (94%), Positives = 36/36 (100%)

Query: 193 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 228
           +I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 131 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 166


>gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]
          Length = 175

 Score = 98.2 bits (243), Expect = 5e-21
 Identities = 50/60 (83%), Positives = 50/60 (83%)

Query: 11  SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70
           SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A H AQKAC RKQLFQ SPVKV
Sbjct: 105 SLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKV 164


>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
          Length = 890

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 15  AFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLG 73
           AF ++G++  V V    A    G YA +KF +   AHRA+ A   + +  ++P+K+  G
Sbjct: 356 AFEKYGIIEEV-VIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGR-VIGRNPIKIGYG 412


>gi|188528675 slit homolog 1 [Homo sapiens]
          Length = 1534

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 100  GFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPS------CDCRSPG 153
            GF+GC + +    EL D  + + +  +VP  +   K +C   +  P+      C C +  
Sbjct: 1309 GFHGCIRNLYINNELQDFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATPGPMCHCEAGW 1368

Query: 154  IGL-VEEPMD 162
            +GL  ++P D
Sbjct: 1369 VGLHCDQPAD 1378


>gi|7657641 TDP-glucose 4,6-dehydratase [Homo sapiens]
          Length = 350

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 154 IGLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQ 203
           I L++E   + E E+    V  RP+ D+      E++HGL   P  PWK+
Sbjct: 273 IQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIHGLGWRPKVPWKE 322


>gi|31657140 insulin receptor-related receptor precursor [Homo
           sapiens]
          Length = 1297

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 14/56 (25%)

Query: 147 CDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWK 202
           C C+ P  G V  P++  E    K              + E  LH  I +P SPWK
Sbjct: 688 CPCQHPPPGQVLPPLEAQEASFQK--------------KFENFLHNAITIPISPWK 729


>gi|17017980 kelch-like 4 isoform 2 [Homo sapiens]
          Length = 720

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 122 NEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDI 181
           NED+   +P+++L           +C+ R+  + ++ +  D +E+ + ++  ++  SED+
Sbjct: 103 NEDTPKSVPEKNL--------FKEACEKRAQDLEMMAD--DNIEDSTARLDTQH--SEDM 150

Query: 182 VGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLP 225
              R EE+ H +     +  K     +E  L D  L     R+P
Sbjct: 151 NATRSEEQFHVINHAEQTLRKMENYLKEKQLCDVLLIAGHLRIP 194


>gi|17017982 kelch-like 4 isoform 1 [Homo sapiens]
          Length = 718

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 122 NEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDI 181
           NED+   +P+++L           +C+ R+  + ++ +  D +E+ + ++  ++  SED+
Sbjct: 103 NEDTPKSVPEKNL--------FKEACEKRAQDLEMMAD--DNIEDSTARLDTQH--SEDM 150

Query: 182 VGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLP 225
              R EE+ H +     +  K     +E  L D  L     R+P
Sbjct: 151 NATRSEEQFHVINHAEQTLRKMENYLKEKQLCDVLLIAGHLRIP 194


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 23/168 (13%)

Query: 11  SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70
           SL   FSQFG   SV+V  +      GF   + +     A++A +  + K++  K    +
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGF-GFVSYEKHEDANKAVEEMNGKEISGKI---I 261

Query: 71  RLGTRHKAVQHQALALNSSK--CQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVP 128
            +G   K V+ QA      +   QE  + Y G N      + ++ L D  + E       
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEK------ 309

Query: 129 LPKQSLKFFCALEVVLPSCDCRSPGIGLV-----EEPMDKVEEESGKI 171
           L K+   F       +   D RS G G V     EE    V E +G+I
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 357


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 23/168 (13%)

Query: 11  SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70
           SL   FSQFG   SV+V  +      GF   + +     A++A +  + K++  K    +
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGF-GFVSYEKHEDANKAVEEMNGKEISGKI---I 261

Query: 71  RLGTRHKAVQHQALALNSSK--CQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVP 128
            +G   K V+ QA      +   QE  + Y G N      + ++ L D  + E       
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEK------ 309

Query: 129 LPKQSLKFFCALEVVLPSCDCRSPGIGLV-----EEPMDKVEEESGKI 171
           L K+   F       +   D RS G G V     EE    V E +G+I
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 357


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 23/168 (13%)

Query: 11  SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70
           SL   FSQFG   SV+V  +      GF   + +     A++A +  + K++  K    +
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGF-GFVSYEKHEDANKAVEEMNGKEISGKI---I 261

Query: 71  RLGTRHKAVQHQALALNSSK--CQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVP 128
            +G   K V+ QA      +   QE  + Y G N      + ++ L D  + E       
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEK------ 309

Query: 129 LPKQSLKFFCALEVVLPSCDCRSPGIGLV-----EEPMDKVEEESGKI 171
           L K+   F       +   D RS G G V     EE    V E +G+I
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 357


>gi|160420317 filamin A, alpha isoform 2 [Homo sapiens]
          Length = 2647

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 155  GLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWK 202
            GLVE P+D V+   G   V Y PS +  G      L+G  +VP SP+K
Sbjct: 1492 GLVE-PVDVVDNADGTQTVNYVPSRE--GPYSISVLYGDEEVPRSPFK 1536


>gi|116063573 filamin A, alpha isoform 1 [Homo sapiens]
          Length = 2639

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 155  GLVEEPMDKVEEESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWK 202
            GLVE P+D V+   G   V Y PS +  G      L+G  +VP SP+K
Sbjct: 1492 GLVE-PVDVVDNADGTQTVNYVPSRE--GPYSISVLYGDEEVPRSPFK 1536


>gi|131889097 cancer susceptibility candidate 1 isoform b [Homo
           sapiens]
          Length = 716

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 153 GIGLVEEPMDKVEEESGKIAVEYRPS-EDIVGVRCEEEL 190
           G  L++E   KVEEE G I V+   + E+   ++CE E+
Sbjct: 306 GSHLIQEEEIKVEEEQGDIEVKMSSAEEESEAIKCEREM 344


>gi|131889447 cancer susceptibility candidate 1 isoform c [Homo
           sapiens]
          Length = 690

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 153 GIGLVEEPMDKVEEESGKIAVEYRPS-EDIVGVRCEEEL 190
           G  L++E   KVEEE G I V+   + E+   ++CE E+
Sbjct: 370 GSHLIQEEEIKVEEEQGDIEVKMSSAEEESEAIKCEREM 408


>gi|131888105 cancer susceptibility candidate 1 isoform a [Homo
           sapiens]
          Length = 722

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 153 GIGLVEEPMDKVEEESGKIAVEYRPS-EDIVGVRCEEEL 190
           G  L++E   KVEEE G I V+   + E+   ++CE E+
Sbjct: 312 GSHLIQEEEIKVEEEQGDIEVKMSSAEEESEAIKCEREM 350


>gi|118498362 kinectin 1 isoform b [Homo sapiens]
          Length = 1306

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 188  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 221
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1103 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1138


>gi|118498356 kinectin 1 isoform a [Homo sapiens]
          Length = 1357

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 188  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 221
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1126 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1161


>gi|118498368 kinectin 1 isoform c [Homo sapiens]
          Length = 1300

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 188  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 221
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1097 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1132


>gi|33620775 kinectin 1 isoform a [Homo sapiens]
          Length = 1357

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 188  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 221
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1126 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1161


>gi|149588599 membrane-spanning 4-domains, subfamily A, member 15
           isoform 1 [Homo sapiens]
          Length = 240

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 127 VPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEESGKIAVEYRPSEDIVGVRC 186
           V +P  +    C    +LP+  C+ PGI   EEP    +        + RP E    +  
Sbjct: 12  VVIPPNNASGLCPPPAILPTSMCQPPGIMQFEEPPLGAQTPRATQPPDLRPVETF--LTG 69

Query: 187 EEELHGLIQV 196
           E ++ G +Q+
Sbjct: 70  EPKVLGTVQI 79


>gi|38176300 nestin [Homo sapiens]
          Length = 1621

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 110 KLQELSDLEERENEDSMVPLPKQSLK 135
           ++ E  DL  +E +DS VPL K++LK
Sbjct: 522 EIWEEEDLNRKEIQDSQVPLEKETLK 547


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,793,189
Number of Sequences: 37866
Number of extensions: 442386
Number of successful extensions: 1054
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1039
Number of HSP's gapped (non-prelim): 31
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.