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Search of human proteins with 251831117
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|251831117 NADH dehydrogenase subunit 5 [Homo sapiens]
(603 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|251831117 NADH dehydrogenase subunit 5 [Homo sapiens] 1195 0.0
gi|196123589 NADH dehydrogenase subunit 5 [Homo sapiens neandert... 1179 0.0
gi|196123588 NADH dehydrogenase subunit 4 [Homo sapiens neandert... 72 2e-12
gi|251831116 NADH dehydrogenase subunit 4 [Homo sapiens] 72 2e-12
gi|196123580 NADH dehydrogenase subunit 2 [Homo sapiens neandert... 69 1e-11
gi|251831108 NADH dehydrogenase subunit 2 [Homo sapiens] 69 1e-11
gi|31542943 solute carrier family 35, member F2 [Homo sapiens] 35 0.20
gi|196123585 cytochrome c oxidase subunit III [Homo sapiens nean... 31 2.9
gi|251831113 cytochrome c oxidase subunit III [Homo sapiens] 31 2.9
gi|194018482 NLR family, pyrin domain containing 4 [Homo sapiens] 31 2.9
gi|42822882 fat-inducing transcript 1 [Homo sapiens] 31 3.7
gi|4502659 sialic acid binding Ig-like lectin 5 [Homo sapiens] 31 3.7
gi|148762980 sialic acid binding Ig-like lectin 14 [Homo sapiens] 31 3.7
gi|59710093 G-protein coupled receptor 112 [Homo sapiens] 31 3.7
gi|115529471 olfactory receptor, family 1, subfamily C, member 1... 30 4.9
gi|54633317 thioredoxin domain containing 11 [Homo sapiens] 30 4.9
gi|17998700 phosphatidylinositol glycan anchor biosynthesis, cla... 30 8.3
>gi|251831117 NADH dehydrogenase subunit 5 [Homo sapiens]
Length = 603
Score = 1195 bits (3091), Expect = 0.0
Identities = 603/603 (100%), Positives = 603/603 (100%)
Query: 1 MTMHTTMTTLTLTSLIPPILTTLVNPNKKNSYPHYVKSIVASTFIISLFPTTMFMCLDQE 60
MTMHTTMTTLTLTSLIPPILTTLVNPNKKNSYPHYVKSIVASTFIISLFPTTMFMCLDQE
Sbjct: 1 MTMHTTMTTLTLTSLIPPILTTLVNPNKKNSYPHYVKSIVASTFIISLFPTTMFMCLDQE 60
Query: 61 VIISNWHWATTQTTQLSLSFKLDYFSMMFIPVALFVTWSIMEFSLWYMNSDPNINQFFKY 120
VIISNWHWATTQTTQLSLSFKLDYFSMMFIPVALFVTWSIMEFSLWYMNSDPNINQFFKY
Sbjct: 61 VIISNWHWATTQTTQLSLSFKLDYFSMMFIPVALFVTWSIMEFSLWYMNSDPNINQFFKY 120
Query: 121 LLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADANTAAIQAILYNRIGDI 180
LLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADANTAAIQAILYNRIGDI
Sbjct: 121 LLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADANTAAIQAILYNRIGDI 180
Query: 181 GFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLLAAAGKSAQLGLHPWLPSAMEGP 240
GFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLLAAAGKSAQLGLHPWLPSAMEGP
Sbjct: 181 GFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLLAAAGKSAQLGLHPWLPSAMEGP 240
Query: 241 TPVSALLHSSTMVVAGIFLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIKK 300
TPVSALLHSSTMVVAGIFLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIKK
Sbjct: 241 TPVSALLHSSTMVVAGIFLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIKK 300
Query: 301 IVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMG 360
IVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMG
Sbjct: 301 IVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMG 360
Query: 361 GLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIATSLTS 420
GLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIATSLTS
Sbjct: 361 GLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIATSLTS 420
Query: 421 AYSTRMILLTLTGQPRFPTLTNINENNPTLLNPIKRLAAGSLFAGFLITNNISPASPFQT 480
AYSTRMILLTLTGQPRFPTLTNINENNPTLLNPIKRLAAGSLFAGFLITNNISPASPFQT
Sbjct: 421 AYSTRMILLTLTGQPRFPTLTNINENNPTLLNPIKRLAAGSLFAGFLITNNISPASPFQT 480
Query: 481 TIPLYLKLTALAVTFLGLLTALDLNYLTNKLKMKSPLCTFYFSNMLGFYPSITHRTIPYL 540
TIPLYLKLTALAVTFLGLLTALDLNYLTNKLKMKSPLCTFYFSNMLGFYPSITHRTIPYL
Sbjct: 481 TIPLYLKLTALAVTFLGLLTALDLNYLTNKLKMKSPLCTFYFSNMLGFYPSITHRTIPYL 540
Query: 541 GLLTSQNLPLLLLDLTWLEKLLPKTISQHQISTSIITSTQKGMIKLYFLSFFFPLILTLL 600
GLLTSQNLPLLLLDLTWLEKLLPKTISQHQISTSIITSTQKGMIKLYFLSFFFPLILTLL
Sbjct: 541 GLLTSQNLPLLLLDLTWLEKLLPKTISQHQISTSIITSTQKGMIKLYFLSFFFPLILTLL 600
Query: 601 LIT 603
LIT
Sbjct: 601 LIT 603
>gi|196123589 NADH dehydrogenase subunit 5 [Homo sapiens
neanderthalensis]
Length = 603
Score = 1179 bits (3051), Expect = 0.0
Identities = 594/602 (98%), Positives = 598/602 (99%)
Query: 1 MTMHTTMTTLTLTSLIPPILTTLVNPNKKNSYPHYVKSIVASTFIISLFPTTMFMCLDQE 60
MTMHTTMTTLTLTSLIPPILTTL+NPNKKNSYPHYVKSIVASTFIISLFPTTMFMCLDQE
Sbjct: 1 MTMHTTMTTLTLTSLIPPILTTLINPNKKNSYPHYVKSIVASTFIISLFPTTMFMCLDQE 60
Query: 61 VIISNWHWATTQTTQLSLSFKLDYFSMMFIPVALFVTWSIMEFSLWYMNSDPNINQFFKY 120
VIISNWHWATTQTTQLSLSFKLDYFSMMFIPVALFVTWSIMEFSLWYMNSDPNINQFFKY
Sbjct: 61 VIISNWHWATTQTTQLSLSFKLDYFSMMFIPVALFVTWSIMEFSLWYMNSDPNINQFFKY 120
Query: 121 LLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADANTAAIQAILYNRIGDI 180
LLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADANTAAIQAILYNRIGDI
Sbjct: 121 LLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADANTAAIQAILYNRIGDI 180
Query: 181 GFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLLAAAGKSAQLGLHPWLPSAMEGP 240
GFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLLAAAGKSAQLGLHPWLPSAMEGP
Sbjct: 181 GFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLLAAAGKSAQLGLHPWLPSAMEGP 240
Query: 241 TPVSALLHSSTMVVAGIFLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIKK 300
TPVSALLHSSTMVVAG+FLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIKK
Sbjct: 241 TPVSALLHSSTMVVAGVFLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIKK 300
Query: 301 IVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMG 360
IVAFSTSSQLGLM+VTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMG
Sbjct: 301 IVAFSTSSQLGLMVVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMG 360
Query: 361 GLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIATSLTS 420
GLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIATSLTS
Sbjct: 361 GLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIATSLTS 420
Query: 421 AYSTRMILLTLTGQPRFPTLTNINENNPTLLNPIKRLAAGSLFAGFLITNNISPASPFQT 480
AYSTRMILLTLTGQPRFPTLTNINENNPTLLNPIKRLAAGSLFAGFLITNNISPASPFQT
Sbjct: 421 AYSTRMILLTLTGQPRFPTLTNINENNPTLLNPIKRLAAGSLFAGFLITNNISPASPFQT 480
Query: 481 TIPLYLKLTALAVTFLGLLTALDLNYLTNKLKMKSPLCTFYFSNMLGFYPSITHRTIPYL 540
TIPLYLKL ALAVTFLGLLTALDLNYLTNKLKMK+PL TFYFSNMLGFYPSITHRTIPYL
Sbjct: 481 TIPLYLKLAALAVTFLGLLTALDLNYLTNKLKMKTPLYTFYFSNMLGFYPSITHRTIPYL 540
Query: 541 GLLTSQNLPLLLLDLTWLEKLLPKTISQHQISTSIITSTQKGMIKLYFLSFFFPLILTLL 600
GLLTSQNLPLLLLDLTWLEKLLPKTISQHQIS SI TSTQKGMIKLYFLSFFFPLILTLL
Sbjct: 541 GLLTSQNLPLLLLDLTWLEKLLPKTISQHQISASITTSTQKGMIKLYFLSFFFPLILTLL 600
Query: 601 LI 602
LI
Sbjct: 601 LI 602
>gi|196123588 NADH dehydrogenase subunit 4 [Homo sapiens
neanderthalensis]
Length = 459
Score = 71.6 bits (174), Expect = 2e-12
Identities = 87/367 (23%), Positives = 160/367 (43%), Gaps = 37/367 (10%)
Query: 91 PVALFVTWSI---MEFSLWYMNSDPNINQ--FFKYLLIFLITMLILVTANNLFQLFIGWE 145
P+ + TW + + S +++S+P + + L+ I++++ TA L +I +E
Sbjct: 64 PLLMLTTWLLPLTIMASQRHLSSEPLSRKKLYLSMLISLQISLIMTFTATELIMFYIFFE 123
Query: 146 GVGIMSFLLISWWYARADANTAAIQAILYNRIGDIGFILALAWFILHSNSWDPQQMALL- 204
I + +I+ W + + A + Y +G + ++AL I N+ + LL
Sbjct: 124 TTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIAL---IYTHNTLGSLNILLLT 180
Query: 205 -------NANPSLTPLLGLLLAAAGKSAQLGLHPWLPSA-MEGPTPVSALLHSSTMVVAG 256
N+ + L +A K GLH WLP A +E P S +L + + + G
Sbjct: 181 LTAQELSNSWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Query: 257 ---IFLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIKKIVAFSTSSQLGLM 313
+ L + +PL ++ + G I T +++C L Q D+K ++A+S+ S + L+
Sbjct: 241 YGMMRLTLILNPLTKHMAYPFLVLSLWGMIMT--SSIC-LRQTDLKSLIAYSSISHMALV 297
Query: 314 MVTIGINQPHL---AFLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMGGLLKTMPLTS 370
+ I I P A + + H ++LF + S ++ I GL +PL +
Sbjct: 298 VTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQ-GLQTLLPLMA 356
Query: 371 TSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIATSL----TSAYSTRM 426
+ SLA +P + ++ T T +W+ +ITL+ T L T+ YS M
Sbjct: 357 FWWLLASLANLALPPTINLLGELSVLVT-----TFSWS-NITLLLTGLNMLVTALYSLYM 410
Query: 427 ILLTLTG 433
T G
Sbjct: 411 FTTTQWG 417
>gi|251831116 NADH dehydrogenase subunit 4 [Homo sapiens]
Length = 459
Score = 71.6 bits (174), Expect = 2e-12
Identities = 87/367 (23%), Positives = 160/367 (43%), Gaps = 37/367 (10%)
Query: 91 PVALFVTWSI---MEFSLWYMNSDPNINQ--FFKYLLIFLITMLILVTANNLFQLFIGWE 145
P+ + TW + + S +++S+P + + L+ I++++ TA L +I +E
Sbjct: 64 PLLMLTTWLLPLTIMASQRHLSSEPLSRKKLYLSMLISLQISLIMTFTATELIMFYIFFE 123
Query: 146 GVGIMSFLLISWWYARADANTAAIQAILYNRIGDIGFILALAWFILHSNSWDPQQMALL- 204
I + +I+ W + + A + Y +G + ++AL I N+ + LL
Sbjct: 124 TTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIAL---IYTHNTLGSLNILLLT 180
Query: 205 -------NANPSLTPLLGLLLAAAGKSAQLGLHPWLPSA-MEGPTPVSALLHSSTMVVAG 256
N+ + L +A K GLH WLP A +E P S +L + + + G
Sbjct: 181 LTAQELSNSWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Query: 257 ---IFLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIKKIVAFSTSSQLGLM 313
+ L + +PL ++ + G I T +++C L Q D+K ++A+S+ S + L+
Sbjct: 241 YGMMRLTLILNPLTKHMAYPFLVLSLWGMIMT--SSIC-LRQTDLKSLIAYSSISHMALV 297
Query: 314 MVTIGINQPHL---AFLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMGGLLKTMPLTS 370
+ I I P A + + H ++LF + S ++ I GL +PL +
Sbjct: 298 VTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQ-GLQTLLPLMA 356
Query: 371 TSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIATSL----TSAYSTRM 426
+ SLA +P + ++ T T +W+ +ITL+ T L T+ YS M
Sbjct: 357 FWWLLASLANLALPPTINLLGELSVLVT-----TFSWS-NITLLLTGLNMLVTALYSLYM 410
Query: 427 ILLTLTG 433
T G
Sbjct: 411 FTTTQWG 417
>gi|196123580 NADH dehydrogenase subunit 2 [Homo sapiens
neanderthalensis]
Length = 347
Score = 68.9 bits (167), Expect = 1e-11
Identities = 88/361 (24%), Positives = 153/361 (42%), Gaps = 57/361 (15%)
Query: 120 YLLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADANTAAIQAILYNRIGD 179
Y IF T LI +++ F ++G E + +++F+ + + AAI+ L
Sbjct: 10 YSTIFAGT-LITALSSHWFFTWVGLE-MNMLAFIPVLTKKMNPRSTEAAIKYFLTQATAS 67
Query: 180 IGFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLLAAAGKSAQLGLHPWLPSAMEG 239
+ ++A+ + + S W + N + L+ +++A A K H W+P +G
Sbjct: 68 MILLMAILFNNMLSGQW-----TMTNTTNQYSSLM-IMMAMAMKLGMAPFHFWVPEVTQG 121
Query: 240 PTPVSALLHSSTMVVAGIFLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIK 299
S LL + +A I ++ + P L +L L L ++ + + L Q ++
Sbjct: 122 TPLTSGLLLLTWQKLAPISIMYQISP-----SLNVSLLLTLSILSIMAGSWGGLNQTQLR 176
Query: 300 KIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNNEQDI--- 356
KI+A+S+ + +G MM + N P++ L++ + F ++ NLN+
Sbjct: 177 KILAYSSITHMGWMMAVLPYN-PNMTILNLTIYIILTTTAF-----LLLNLNSSTTTLLL 230
Query: 357 -RKMGGLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIA 415
R L PL ++L L+L G+P LTGF K IIE +T +L I I
Sbjct: 231 SRTWNKLTWLTPLIPSTL----LSLGGLPPLTGFLPKWAIIE----EFTKNNSLIIPTIM 282
Query: 416 TSLT---------SAYSTRMILLTLTGQ-------------PRFPTLTNINENNPTLLNP 453
++T YST + LL ++ P PTL + TLL P
Sbjct: 283 ATITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTLITLT----TLLLP 338
Query: 454 I 454
I
Sbjct: 339 I 339
>gi|251831108 NADH dehydrogenase subunit 2 [Homo sapiens]
Length = 347
Score = 68.9 bits (167), Expect = 1e-11
Identities = 90/376 (23%), Positives = 158/376 (42%), Gaps = 52/376 (13%)
Query: 120 YLLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADANTAAIQAILYNRIGD 179
Y IF T LI +++ F ++G E + +++F+ + + AAI+ L
Sbjct: 10 YSTIFAGT-LITALSSHWFFTWVGLE-MNMLAFIPVLTKKMNPRSTEAAIKYFLTQATAS 67
Query: 180 IGFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLLAAAGKSAQLGLHPWLPSAMEG 239
+ ++A+ + + S W + N + L+ +++A A K H W+P +G
Sbjct: 68 MILLMAILFNNMLSGQW-----TMTNTTNQYSSLM-IMMAMAMKLGMAPFHFWVPEVTQG 121
Query: 240 PTPVSALLHSSTMVVAGIFLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIK 299
S LL + +A I ++ + P L +L L L ++ + + L Q ++
Sbjct: 122 TPLTSGLLLLTWQKLAPISIMYQISP-----SLNVSLLLTLSILSIMAGSWGGLNQTQLR 176
Query: 300 KIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNNEQDI--- 356
KI+A+S+ + +G MM + N P++ L++ + F ++ NLN+
Sbjct: 177 KILAYSSITHMGWMMAVLPYN-PNMTILNLTIYIILTTTAF-----LLLNLNSSTTTLLL 230
Query: 357 -RKMGGLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIA 415
R L PL ++L L+L G+P LTGF K IIE +T +L I I
Sbjct: 231 SRTWNKLTWLTPLIPSTL----LSLGGLPPLTGFLPKWAIIE----EFTKNNSLIIPTIM 282
Query: 416 TSLT---------SAYSTRMILLTLTGQPRFPTLTNINENNPTLLNPIKRLAAGSLFAGF 466
++T YST + LL ++ + PT P +L A
Sbjct: 283 ATITLLNLYFYLRLIYSTSITLLPMSNNVKMK--WQFEHTKPTPFLP-------TLIA-- 331
Query: 467 LITNNISPASPFQTTI 482
+T + P SPF I
Sbjct: 332 -LTTLLLPISPFMLMI 346
>gi|31542943 solute carrier family 35, member F2 [Homo sapiens]
Length = 374
Score = 35.0 bits (79), Expect = 0.20
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 23/101 (22%)
Query: 107 YMNSDPNINQFFKYLLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWW------YA 160
Y + P + F Y L+FLI ++L + L + L WW A
Sbjct: 67 YKVNTPMLQSFINYCLLFLIYTVMLAFRSGSDNLLV---------ILKRKWWKYILLGLA 117
Query: 161 RADANTAAIQAILYNRIGDIGFI--------LALAWFILHS 193
+AN ++A Y + + + +AL+WFILH+
Sbjct: 118 DVEANYVIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILHA 158
>gi|196123585 cytochrome c oxidase subunit III [Homo sapiens
neanderthalensis]
Length = 260
Score = 31.2 bits (69), Expect = 2.9
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 226 QLGLHPWLPSAMEGPTPVSA-LLHSSTMVVAGIFLLIRFHPLAEN--SPLIQTL--TLCL 280
QLG H W P+ + P+ LL++S ++ +G+ + H L EN + +IQ L T+ L
Sbjct: 111 QLGGH-WPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILL 169
Query: 281 GAITTLFAA 289
G TL A
Sbjct: 170 GLYFTLLQA 178
>gi|251831113 cytochrome c oxidase subunit III [Homo sapiens]
Length = 261
Score = 31.2 bits (69), Expect = 2.9
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 226 QLGLHPWLPSAMEGPTPVSA-LLHSSTMVVAGIFLLIRFHPLAEN--SPLIQTL--TLCL 280
QLG H W P+ + P+ LL++S ++ +G+ + H L EN + +IQ L T+ L
Sbjct: 111 QLGGH-WPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILL 169
Query: 281 GAITTLFAA 289
G TL A
Sbjct: 170 GLYFTLLQA 178
>gi|194018482 NLR family, pyrin domain containing 4 [Homo sapiens]
Length = 994
Score = 31.2 bits (69), Expect = 2.9
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 245 ALLHSSTMVVAGIFLLIRFHPLAENSPLIQTL----TLCLGAITTLFAAVCALTQNDIKK 300
AL ST V F+ F P P QT LC A ++ ++D+++
Sbjct: 362 ALTCQSTTSVYSSFVFNLFTPEGAEGPTPQTQHQLKALCSLAAEGMWTDTFEFCEDDLRR 421
Query: 301 --IVAFSTSSQLGL-MMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIH 348
+V + LG +++ G + FLH+C F A+ ++ + H
Sbjct: 422 NGVVDADIPALLGTKILLKYGERESSYVFLHVCIQEFCAALFYLLKSHLDH 472
>gi|42822882 fat-inducing transcript 1 [Homo sapiens]
Length = 292
Score = 30.8 bits (68), Expect = 3.7
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 118 FKYLLIFLITMLILVTANNLFQLFIG---WEGVGIMSFLLI 155
F L++FL T + VTA +L +L +G W G G +FLLI
Sbjct: 106 FVLLVVFLATRRVAVTARHLSRLVVGAAVWRGAG-RAFLLI 145
>gi|4502659 sialic acid binding Ig-like lectin 5 [Homo sapiens]
Length = 551
Score = 30.8 bits (68), Expect = 3.7
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 548 LPLLLLDLTWLEKLLPKTISQHQISTSIITSTQKGMIKLYFLSFFFP 594
LPLLLL L W L K + + Q+ S+ + Q+G+ L SF +P
Sbjct: 2 LPLLLLPLLWGGSLQEKPVYELQVQKSV--TVQEGLCVLVPCSFSYP 46
>gi|148762980 sialic acid binding Ig-like lectin 14 [Homo sapiens]
Length = 396
Score = 30.8 bits (68), Expect = 3.7
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 548 LPLLLLDLTWLEKLLPKTISQHQISTSIITSTQKGMIKLYFLSFFFP 594
LPLLLL L W L K + + Q+ S+ + Q+G+ L SF +P
Sbjct: 2 LPLLLLPLLWGGSLQEKPVYELQVQKSV--TVQEGLCVLVPCSFSYP 46
>gi|59710093 G-protein coupled receptor 112 [Homo sapiens]
Length = 3080
Score = 30.8 bits (68), Expect = 3.7
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 365 TMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIATSLT-SAYS 423
+ PL ST +T A P ++ F+ + T + T A S + AT T S Y+
Sbjct: 2192 SFPLISTGVTYPFTATVSSP-ISSFFETTWLDSTPSFLSTEA---STSPTATKSTVSFYN 2247
Query: 424 TRMILLTLTGQPRFPTLTNINENNPTLLNPI 454
M +PR P + INE LN I
Sbjct: 2248 VEMSFSVFVEEPRIPITSVINEFTENSLNSI 2278
>gi|115529471 olfactory receptor, family 1, subfamily C, member 1
[Homo sapiens]
Length = 314
Score = 30.4 bits (67), Expect = 4.9
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 30/174 (17%)
Query: 243 VSALLHSSTMVVAGIFLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIKKIV 302
V+ L + T+ AG + F N + +L LC+ A + A+C + +
Sbjct: 83 VNILTGTKTISFAGCLTQLFFFVSFVN---MDSLLLCVMAYDR-YVAICHPLHYTARMNL 138
Query: 303 AFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIH----NLN------- 351
GL +VT +LH H A L C+ +IIH +LN
Sbjct: 139 CLCVQLVAGLWLVT---------YLHALLHTVLIAQLSFCASNIIHHFFCDLNPLLQLSC 189
Query: 352 -----NEQDIRKMGGLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETAN 400
N I +GGLL PL ++ G L + + +T K + T +
Sbjct: 190 SDVSFNVMIIFAVGGLLALTPLVCILVSYG-LIFSTVLKITSTQGKQRAVSTCS 242
>gi|54633317 thioredoxin domain containing 11 [Homo sapiens]
Length = 958
Score = 30.4 bits (67), Expect = 4.9
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 244 SALLHSSTMVVAGIFLLIRFHPLAENSPLIQTLT 277
S LL++ +FL I F+PLAE+ PLI +T
Sbjct: 338 SLLLNNELKKGPALFLFIPFNPLAESHPLIDEIT 371
>gi|17998700 phosphatidylinositol glycan anchor biosynthesis, class
U [Homo sapiens]
Length = 435
Score = 29.6 bits (65), Expect = 8.3
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 151 SFLLISWWYARADANTAAIQAILYNRIGDIGFILALAWFILHSNSWDPQQMALLNANPSL 210
+F + SW YA ++Y +G + I+ L++F+L S + P + + P L
Sbjct: 221 AFWIFSWEYA-----------MMY--VGSLVVIICLSFFLLSSWDFIPAVYGFILSVPDL 267
Query: 211 TPLLGL 216
TP +GL
Sbjct: 268 TPNIGL 273
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,726,020
Number of Sequences: 37866
Number of extensions: 792669
Number of successful extensions: 2531
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2511
Number of HSP's gapped (non-prelim): 26
length of query: 603
length of database: 18,247,518
effective HSP length: 108
effective length of query: 495
effective length of database: 14,157,990
effective search space: 7008205050
effective search space used: 7008205050
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.