Guide to the Human Genome
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Name: OR1C1 Sequence: fasta or formatted (314aa) NCBI GI: 115529471
Description:

olfactory receptor, family 1, subfamily C, member 1

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         18           1
 C cysteine            4.5         14           1
 D aspartate           2.5          8           1
 E glutamate           1.3          4           1
 F phenylalanine       7.0         22           3
 G glycine             3.8         12           2
 H histidine           3.5         11           2
 I isoleucine          5.7         18           2
 K lysine              2.2          7           1
 L leucine            15.9         50           3
 M methionine          4.8         15           1
 N asparagine          3.5         11           1
 P proline             3.5         11           1
 Q glutamine           4.1         13           3
 R arginine            2.5          8           1
 S serine              8.6         27           2
 T threonine           7.6         24           2
 V valine              9.2         29           3
 W tryptophan          0.3          1           1
 Y tyrosine            3.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 1, subfamily C, member 1... 
OR1F1                 0.585   olfactory receptor, family 1, subfamily F, member 1 [...
OR1J4                 0.526   olfactory receptor, family 1, subfamily J, member 4 ...
OR1G1                 0.522   olfactory receptor, family 1, subfamily G, member 1 ...
OR1E1                 0.511   olfactory receptor, family 1, subfamily E, member 1...
OR7C2                 0.511   olfactory receptor, family 7, subfamily C, member 2 ...
OR1J1                 0.509   olfactory receptor, family 1, subfamily J, member 1 ...
OR1M1                 0.507   olfactory receptor, family 1, subfamily M, member 1 ...
OR1J2                 0.506   olfactory receptor, family 1, subfamily J, member 2 ...
OR1E2                 0.506   olfactory receptor, family 1, subfamily E, member 2 ...
OR7C1                 0.502   olfactory receptor, family 7, subfamily C, member 1 ...
OR7D4                 0.498   olfactory receptor, family 7, subfamily D, member 4 ...
OR7A17                0.491   olfactory receptor, family 7, subfamily A, member 17...
OR1L3                 0.481   olfactory receptor, family 1, subfamily L, member 3 ...
OR7A10                0.481   olfactory receptor, family 7, subfamily A, member 10...
OR1L4                 0.481   olfactory receptor, family 1, subfamily L, member 4 ...
OR1L8                 0.479   olfactory receptor, family 1, subfamily L, member 8 ...
OR1L6                 0.479   olfactory receptor, family 1, subfamily L, member 6 ...
OR1N1                 0.479   olfactory receptor, family 1, subfamily N, member 1 ...
OR5V1                 0.479   olfactory receptor, family 5, subfamily V, member 1 ...
OR1L1                 0.478   olfactory receptor, family 1, subfamily L, member 1...
OR7D2                 0.478   olfactory receptor, family 7, subfamily D, member 2 ...
OR1S2                 0.476   olfactory receptor, family 1, subfamily S, member 2 ...
OR1S1                 0.474   olfactory receptor, family 1, subfamily S, member 1 ...
OR7A5                 0.473   olfactory receptor, family 7, subfamily A, member 5 [...
OR1A1                 0.469   olfactory receptor, family 1, subfamily A, member 1 [...
OR1K1                 0.468   olfactory receptor, family 1, subfamily K, member 1 ...
OR1I1                 0.464   olfactory receptor, family 1, subfamily I, member 1 ...
OR7G3                 0.464   olfactory receptor, family 7, subfamily G, member 3 ...
OR1N2                 0.461   olfactory receptor, family 1, subfamily N, member 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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