Guide to the Human Genome
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Name: FITM1 Sequence: fasta or formatted (292aa) NCBI GI: 42822882
Description:

fat-inducing transcript 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         32           2
 C cysteine            2.7          8           2
 D aspartate           0.7          2           1
 E glutamate           2.4          7           2
 F phenylalanine       6.8         20           2
 G glycine             9.9         29           2
 H histidine           4.8         14           1
 I isoleucine          2.1          6           1
 K lysine              1.7          5           1
 L leucine            17.1         50           3
 M methionine          0.7          2           1
 N asparagine          2.4          7           1
 P proline             4.8         14           1
 Q glutamine           2.4          7           1
 R arginine            6.2         18           2
 S serine              5.1         15           2
 T threonine           4.5         13           1
 V valine              8.2         24           2
 W tryptophan          3.4         10           1
 Y tyrosine            3.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fat-inducing transcript 1 
FITM2                 0.197   fat storage-inducing transmembrane protein 2 
LOC100289122          0.012   PREDICTED: hypothetical protein XP_002344150 
ND5                   0.010   NADH dehydrogenase subunit 5 
ND5                   0.010   NADH dehydrogenase subunit 5 
SLC47A1               0.009   solute carrier family 47, member 1 
PPAPDC2               0.009   phosphatidic acid phosphatase type 2 domain containi...
C19orf28              0.007   hypothetical protein LOC126321 isoform c 
P2RY10                0.007   G-protein coupled purinergic receptor P2Y10 
P2RY10                0.007   G-protein coupled purinergic receptor P2Y10 
C19orf28              0.007   hypothetical protein LOC126321 isoform b 
C19orf28              0.007   hypothetical protein LOC126321 isoform a 
PRG3                  0.005   proteoglycan 3 
FBXO18                0.005   F-box only protein, helicase, 18 isoform 1 
FBXO18                0.005   F-box only protein, helicase, 18 isoform 2 
OR10H1                0.005   olfactory receptor, family 10, subfamily H, member 1 ...
ZNF703                0.005   zinc finger protein 703 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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