Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 119964728
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|119964728 D-2-hydroxyglutarate dehydrogenase precursor [Homo
sapiens]
(521 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|119964728 D-2-hydroxyglutarate dehydrogenase precursor [Homo ... 1057 0.0
gi|37595756 D-lactate dehydrogenase isoform 2 precursor [Homo sa... 162 5e-40
gi|37595754 D-lactate dehydrogenase isoform 1 precursor [Homo sa... 154 1e-37
gi|4501993 alkyldihydroxyacetone phosphate synthase precursor [H... 75 1e-13
gi|239755464 PREDICTED: similar to hCG2045708 [Homo sapiens] 38 0.020
gi|239749955 PREDICTED: similar to hCG2045708 [Homo sapiens] 38 0.020
gi|239744269 PREDICTED: hypothetical protein XP_002343109 [Homo ... 38 0.020
gi|148746189 multiple PDZ domain protein [Homo sapiens] 35 0.13
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 31 2.4
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 31 2.4
gi|193083131 MAP/microtubule affinity-regulating kinase 3 isofor... 31 2.4
gi|193083129 MAP/microtubule affinity-regulating kinase 3 isofor... 31 2.4
gi|193083127 MAP/microtubule affinity-regulating kinase 3 isofor... 31 2.4
gi|193083125 MAP/microtubule affinity-regulating kinase 3 isofor... 31 2.4
gi|46852166 MAP/microtubule affinity-regulating kinase 3 isoform... 31 2.4
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 31 2.4
gi|13129120 trafficking protein particle complex 6A [Homo sapiens] 31 3.1
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ... 31 3.1
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ... 31 3.1
gi|37537554 hypothetical protein FLJ37538 [Homo sapiens] 31 3.1
gi|4503583 epoxide hydrolase 1 [Homo sapiens] 30 4.1
gi|209862837 epoxide hydrolase 1 [Homo sapiens] 30 4.1
gi|13375618 24-dehydrocholesterol reductase precursor [Homo sapi... 30 4.1
gi|239756163 PREDICTED: hypothetical protein [Homo sapiens] 30 4.1
gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo ... 30 4.1
gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo ... 30 4.1
gi|217035113 organic solute transporter alpha [Homo sapiens] 30 4.1
gi|21955174 kinesin family member C2 [Homo sapiens] 30 5.4
gi|169169865 PREDICTED: hypothetical protein LOC285754 [Homo sap... 30 7.0
gi|169168870 PREDICTED: hypothetical protein LOC285754 [Homo sap... 30 7.0
>gi|119964728 D-2-hydroxyglutarate dehydrogenase precursor [Homo
sapiens]
Length = 521
Score = 1057 bits (2734), Expect = 0.0
Identities = 521/521 (100%), Positives = 521/521 (100%)
Query: 1 MLPRRPLAWPAWLLRGAPGAAGSWGRPVGPLARRGCCSAPGTPEVPLTRERYPVRRLPFS 60
MLPRRPLAWPAWLLRGAPGAAGSWGRPVGPLARRGCCSAPGTPEVPLTRERYPVRRLPFS
Sbjct: 1 MLPRRPLAWPAWLLRGAPGAAGSWGRPVGPLARRGCCSAPGTPEVPLTRERYPVRRLPFS 60
Query: 61 TVSKQDLAAFERIVPGGVVTDPEALQAPNVDWLRTLRGCSKVLLRPRTSEEVSHILRHCH 120
TVSKQDLAAFERIVPGGVVTDPEALQAPNVDWLRTLRGCSKVLLRPRTSEEVSHILRHCH
Sbjct: 61 TVSKQDLAAFERIVPGGVVTDPEALQAPNVDWLRTLRGCSKVLLRPRTSEEVSHILRHCH 120
Query: 121 ERNLAVNPQGGNTGMVGGSVPVFDEIILSTARMNRVLSFHSVSGILVCQAGCVLEELSRY 180
ERNLAVNPQGGNTGMVGGSVPVFDEIILSTARMNRVLSFHSVSGILVCQAGCVLEELSRY
Sbjct: 121 ERNLAVNPQGGNTGMVGGSVPVFDEIILSTARMNRVLSFHSVSGILVCQAGCVLEELSRY 180
Query: 181 VEERDFIMPLDLGAKGSCHIGGNVATNAGGLRFLRYGSLHGTVLGLEVVLADGTVLDCLT 240
VEERDFIMPLDLGAKGSCHIGGNVATNAGGLRFLRYGSLHGTVLGLEVVLADGTVLDCLT
Sbjct: 181 VEERDFIMPLDLGAKGSCHIGGNVATNAGGLRFLRYGSLHGTVLGLEVVLADGTVLDCLT 240
Query: 241 SLRKDNTGYDLKQLFIGSEGTLGIITTVSILCPPKPRAVNVAFLGCPGFAEVLQTFSTCK 300
SLRKDNTGYDLKQLFIGSEGTLGIITTVSILCPPKPRAVNVAFLGCPGFAEVLQTFSTCK
Sbjct: 241 SLRKDNTGYDLKQLFIGSEGTLGIITTVSILCPPKPRAVNVAFLGCPGFAEVLQTFSTCK 300
Query: 301 GMLGEILSAFEFMDAVCMQLVGRHLHLASPVQESPFYVLIETSGSNAGHDAEKLGHFLEH 360
GMLGEILSAFEFMDAVCMQLVGRHLHLASPVQESPFYVLIETSGSNAGHDAEKLGHFLEH
Sbjct: 301 GMLGEILSAFEFMDAVCMQLVGRHLHLASPVQESPFYVLIETSGSNAGHDAEKLGHFLEH 360
Query: 361 ALGSGLVTDGTMATDQRKVKMLWALRERITEALSRDGYVYKYDLSLPVERLYDIVTDLRA 420
ALGSGLVTDGTMATDQRKVKMLWALRERITEALSRDGYVYKYDLSLPVERLYDIVTDLRA
Sbjct: 361 ALGSGLVTDGTMATDQRKVKMLWALRERITEALSRDGYVYKYDLSLPVERLYDIVTDLRA 420
Query: 421 RLGPHAKHVVGYGHLGDGNLHLNVTAEAFSPSLLAALEPHVYEWTAGQQGSVSAEHGVGF 480
RLGPHAKHVVGYGHLGDGNLHLNVTAEAFSPSLLAALEPHVYEWTAGQQGSVSAEHGVGF
Sbjct: 421 RLGPHAKHVVGYGHLGDGNLHLNVTAEAFSPSLLAALEPHVYEWTAGQQGSVSAEHGVGF 480
Query: 481 RKRDVLGYSKPPGALQLMQQLKALLDPKGILNPYKTLPSQA 521
RKRDVLGYSKPPGALQLMQQLKALLDPKGILNPYKTLPSQA
Sbjct: 481 RKRDVLGYSKPPGALQLMQQLKALLDPKGILNPYKTLPSQA 521
>gi|37595756 D-lactate dehydrogenase isoform 2 precursor [Homo
sapiens]
Length = 484
Score = 162 bits (411), Expect = 5e-40
Identities = 126/422 (29%), Positives = 196/422 (46%), Gaps = 19/422 (4%)
Query: 106 PRTSEEVSHILRHCHERNLAVNPQGGNTGMVGGSVPVFDEIILSTARMNRVLSFHSVSGI 165
P+ E+VS + C+ + + + P G TG+ GG V + ++ M+R+L +
Sbjct: 72 PQNVEQVSRLAALCYRQGVPIIPFGTGTGLEGGVCAVQGGVCVNLTHMDRILELNQEDFS 131
Query: 166 LVCQAGCVLEELSRYVEERDFIMPLDLGAKGSCHIGGNVATNAGGLRFLRYGSLHGTVLG 225
+V + G + L+ ++ + P+D GA S + G AT A G +RYG++ VL
Sbjct: 132 VVVEPGVTRKALNAHLRDSGLWFPVDPGADAS--LCGMAATGASGTNAVRYGTMRDNVLN 189
Query: 226 LEVVLADGTVLDCL---TSLRKDNTGYDLKQLFIGSEGTLGIITTVSILCPPKPRAVNVA 282
LEVVL DG +L RK GY+L LF+GSEGTLG+IT ++ P P A A
Sbjct: 190 LEVVLPDGRLLHTAGRGRHFRKSAAGYNLTGLFVGSEGTLGLITATTLRLHPAPEATVAA 249
Query: 283 FLGCPGFAEVLQTFSTCKGMLGEI-LSAFEFMDAVCMQLVGRHLHLASPVQESPFYVLIE 341
P + ST + + ++ EF+D V M R+ L V + F +E
Sbjct: 250 TCAFPSVQAAVD--STVHILQAAVPVARIEFLDEVMMDACNRYSKLNCLVAPTLF---LE 304
Query: 342 TSGSNAGHDAEKLGHFLEHALGSGLVTDGTMATDQRKVKMLWALRERITEAL--SRDGYV 399
GS + E+L E +G +D + A + + LW R A +R G
Sbjct: 305 FHGSQQALE-EQLQRTEEIVQQNG-ASDFSWAKEAEERSRLWTARHNAWYAALATRPGCK 362
Query: 400 -YKYDLSLPVERLYDIVTDLRARLGPHAKHVVGYGHLGDGNLHLNVTA---EAFSPSLLA 455
Y D+ +P+ RL +IV + L GH+GDGN H + +A +
Sbjct: 363 GYSTDVCVPISRLPEIVVQTKEDLNASGLTGSIVGHVGDGNFHCILLVNPDDAEELGRVK 422
Query: 456 ALEPHVYEWTAGQQGSVSAEHGVGFRKRDVLGYSKPPGALQLMQQLKALLDPKGILNPYK 515
A + G+ + EHG+G KR +L ++ M+QLKA+LDP+G++NP K
Sbjct: 423 AFAEQLGRRALALHGTCTGEHGIGMGKRQLLQEEVGAVGVETMRQLKAVLDPQGLMNPGK 482
Query: 516 TL 517
L
Sbjct: 483 VL 484
>gi|37595754 D-lactate dehydrogenase isoform 1 precursor [Homo
sapiens]
Length = 507
Score = 154 bits (390), Expect = 1e-37
Identities = 127/445 (28%), Positives = 199/445 (44%), Gaps = 42/445 (9%)
Query: 106 PRTSEEVSHILRHCHERNLAVNPQGGNTGMVGGSVPVFDEIILSTARMNRVLSFHSVSGI 165
P+ E+VS + C+ + + + P G TG+ GG V + ++ M+R+L +
Sbjct: 72 PQNVEQVSRLAALCYRQGVPIIPFGTGTGLEGGVCAVQGGVCVNLTHMDRILELNQEDFS 131
Query: 166 LVCQAGCVLEELSRYVEERDFIMPLDLGAKGSCHIGGNVATNAGGLRFLRYGSLHGTVLG 225
+V + G + L+ ++ + P+D GA S + G AT A G +RYG++ VL
Sbjct: 132 VVVEPGVTRKALNAHLRDSGLWFPVDPGADAS--LCGMAATGASGTNAVRYGTMRDNVLN 189
Query: 226 LEVVLADGTVL-------------------------DCLT-SLRKDNTGYDLKQLFIGSE 259
LEVVL DG +L C++ RK GY+L LF+GSE
Sbjct: 190 LEVVLPDGRLLHTAGRGRHFRFGFWPEIPHHTAWYSPCVSLGRRKSAAGYNLTGLFVGSE 249
Query: 260 GTLGIITTVSILCPPKPRAVNVAFLGCPGFAEVLQTFSTCKGMLGEI-LSAFEFMDAVCM 318
GTLG+IT ++ P P A A P + ST + + ++ EF+D V M
Sbjct: 250 GTLGLITATTLRLHPAPEATVAATCAFPSVQAAVD--STVHILQAAVPVARIEFLDEVMM 307
Query: 319 QLVGRHLHLASPVQESPFYVLIETSGSNAGHDAEKLGHFLEHALGSGLVTDGTMATDQRK 378
R+ L V + F +E GS + E+L E +G +D + A + +
Sbjct: 308 DACNRYSKLNCLVAPTLF---LEFHGSQQALE-EQLQRTEEIVQQNG-ASDFSWAKEAEE 362
Query: 379 VKMLWALRERITEA--LSRDGYV-YKYDLSLPVERLYDIVTDLRARLGPHAKHVVGYGHL 435
LW R A +R G Y D+ +P+ RL +IV + L GH+
Sbjct: 363 RSRLWTARHNAWYAALATRPGCKGYSTDVCVPISRLPEIVVQTKEDLNASGLTGSIVGHV 422
Query: 436 GDGNLHLNVTA---EAFSPSLLAALEPHVYEWTAGQQGSVSAEHGVGFRKRDVLGYSKPP 492
GDGN H + +A + A + G+ + EHG+G KR +L
Sbjct: 423 GDGNFHCILLVNPDDAEELGRVKAFAEQLGRRALALHGTCTGEHGIGMGKRQLLQEEVGA 482
Query: 493 GALQLMQQLKALLDPKGILNPYKTL 517
++ M+QLKA+LDP+G++NP K L
Sbjct: 483 VGVETMRQLKAVLDPQGLMNPGKVL 507
>gi|4501993 alkyldihydroxyacetone phosphate synthase precursor [Homo
sapiens]
Length = 658
Score = 75.5 bits (184), Expect = 1e-13
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 5/194 (2%)
Query: 102 VLLRPRTSEEVSHILRHCHERNLAVNPQGGNTGMVGGSVPVFDE----IILSTARMNRVL 157
++L P ++V I+ + NL + P GG T + G + DE I L T++MNR+L
Sbjct: 208 IVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRIL 267
Query: 158 SFHSVSGILVCQAGCVLEELSRYVEERDFIMPLDLGAKGSCHIGGNVATNAGGLRFLRYG 217
+ +AG +EL R ++E + + + +GG V+T A G++ YG
Sbjct: 268 WVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWVSTRASGMKKNIYG 327
Query: 218 SLHGTVLGLEVVLADGTVLDCLTSLRKDNTGYDLKQLFIGSEGTLGIITTVSILCPPKPR 277
++ V+ +++V G + R +TG D+ +GSEGTLG+IT +I P P
Sbjct: 328 NIEDLVVHIKMVTPRGIIEKSCQGPRM-STGPDIHHFIMGSEGTLGVITEATIKIRPVPE 386
Query: 278 AVNVAFLGCPGFAE 291
+ P F +
Sbjct: 387 YQKYGSVAFPNFEQ 400
>gi|239755464 PREDICTED: similar to hCG2045708 [Homo sapiens]
Length = 445
Score = 38.1 bits (87), Expect = 0.020
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 6 PLAWPAWLLRGAPGAAGSWGRPVGPLARRGCCSAPGTPEVPLTR-ERYPVRRLPFSTVSK 64
P AWP L G PG P+ PL + G PG PEV TR ER P R P + V
Sbjct: 184 PTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTR--PPAQVEG 241
Query: 65 QDLAAFERIV 74
+D+ + ++
Sbjct: 242 EDVLVHQLLL 251
>gi|239749955 PREDICTED: similar to hCG2045708 [Homo sapiens]
Length = 445
Score = 38.1 bits (87), Expect = 0.020
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 6 PLAWPAWLLRGAPGAAGSWGRPVGPLARRGCCSAPGTPEVPLTR-ERYPVRRLPFSTVSK 64
P AWP L G PG P+ PL + G PG PEV TR ER P R P + V
Sbjct: 184 PTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTR--PPAQVEG 241
Query: 65 QDLAAFERIV 74
+D+ + ++
Sbjct: 242 EDVLVHQLLL 251
>gi|239744269 PREDICTED: hypothetical protein XP_002343109 [Homo
sapiens]
Length = 445
Score = 38.1 bits (87), Expect = 0.020
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 6 PLAWPAWLLRGAPGAAGSWGRPVGPLARRGCCSAPGTPEVPLTR-ERYPVRRLPFSTVSK 64
P AWP L G PG P+ PL + G PG PEV TR ER P R P + V
Sbjct: 184 PTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTR--PPAQVEG 241
Query: 65 QDLAAFERIV 74
+D+ + ++
Sbjct: 242 EDVLVHQLLL 251
>gi|148746189 multiple PDZ domain protein [Homo sapiens]
Length = 2041
Score = 35.4 bits (80), Expect = 0.13
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 166 LVCQAGCV-LEELSRYVEERDFIMPLDLGAKGSCHIGGNVATNAGGLRFLRYGSLHGTVL 224
L C A CV L+ +S+ ER + AKG+ +G V+ N GL + +HG +
Sbjct: 988 LACNAECVMLQNVSKESFERTINI-----AKGNSSLGMTVSANKDGLGMIVRSIIHGGAI 1042
Query: 225 GLEVVLADGTVLDCLTSLRKDNT 247
+ +A G DC+ S+ +++T
Sbjct: 1043 SRDGRIAIG---DCILSINEEST 1062
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 31.2 bits (69), Expect = 2.4
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 15 RGAPGAAGSWGRPVGPLARRGCCSAPGTPEVP 46
RG GAAG G P GP+ RG APG P P
Sbjct: 433 RGEKGAAGEEGSP-GPVGPRGDPGAPGLPGPP 463
Score = 30.4 bits (67), Expect = 4.1
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 16 GAPGAAGSWGRPVGPLARRGCCSAPGTPEVPLTR 49
G PG GS G P GPL +G APG P P +R
Sbjct: 469 GEPGLRGSPGLP-GPLGTKGDRGAPGIPGSPGSR 501
Score = 29.6 bits (65), Expect = 7.0
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 16 GAPGAAGSWGR--PVGPLARRGCCSAPGTPEVPLTRERYP 53
G PG G G P+GP RG PG P V L E P
Sbjct: 968 GRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGP 1007
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 31.2 bits (69), Expect = 2.4
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 14 LRGAPGAAGSWGRPVGPLARRGCCSAPGTPEVP 46
LRG+PG G G P GP RG PGTP +P
Sbjct: 565 LRGSPGPKGDMGSP-GPKGDRG---FPGTPGIP 593
>gi|193083131 MAP/microtubule affinity-regulating kinase 3 isoform e
[Homo sapiens]
Length = 659
Score = 31.2 bits (69), Expect = 2.4
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 312 FMDAVCMQLVGRHLHLASPVQESPFYVLIETSGSNAGHDAEKLGHFLEHALGSGLVTDGT 371
+M C L+ R L L +P++ +++ NAGH+ ++L F+E L
Sbjct: 196 YMSTDCENLLKRFLVL-NPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELD-------- 246
Query: 372 MATDQRKVKMLWAL---RERITEALSRDGY 398
+DQ+++ ++ + +E I E+LS+ Y
Sbjct: 247 -ISDQKRIDIMVGMGYSQEEIQESLSKMKY 275
>gi|193083129 MAP/microtubule affinity-regulating kinase 3 isoform d
[Homo sapiens]
Length = 713
Score = 31.2 bits (69), Expect = 2.4
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 312 FMDAVCMQLVGRHLHLASPVQESPFYVLIETSGSNAGHDAEKLGHFLEHALGSGLVTDGT 371
+M C L+ R L L +P++ +++ NAGH+ ++L F+E L
Sbjct: 275 YMSTDCENLLKRFLVL-NPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELD-------- 325
Query: 372 MATDQRKVKMLWAL---RERITEALSRDGY 398
+DQ+++ ++ + +E I E+LS+ Y
Sbjct: 326 -ISDQKRIDIMVGMGYSQEEIQESLSKMKY 354
>gi|193083127 MAP/microtubule affinity-regulating kinase 3 isoform b
[Homo sapiens]
Length = 744
Score = 31.2 bits (69), Expect = 2.4
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 312 FMDAVCMQLVGRHLHLASPVQESPFYVLIETSGSNAGHDAEKLGHFLEHALGSGLVTDGT 371
+M C L+ R L L +P++ +++ NAGH+ ++L F+E L
Sbjct: 275 YMSTDCENLLKRFLVL-NPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELD-------- 325
Query: 372 MATDQRKVKMLWAL---RERITEALSRDGY 398
+DQ+++ ++ + +E I E+LS+ Y
Sbjct: 326 -ISDQKRIDIMVGMGYSQEEIQESLSKMKY 354
>gi|193083125 MAP/microtubule affinity-regulating kinase 3 isoform a
[Homo sapiens]
Length = 753
Score = 31.2 bits (69), Expect = 2.4
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 312 FMDAVCMQLVGRHLHLASPVQESPFYVLIETSGSNAGHDAEKLGHFLEHALGSGLVTDGT 371
+M C L+ R L L +P++ +++ NAGH+ ++L F+E L
Sbjct: 275 YMSTDCENLLKRFLVL-NPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELD-------- 325
Query: 372 MATDQRKVKMLWAL---RERITEALSRDGY 398
+DQ+++ ++ + +E I E+LS+ Y
Sbjct: 326 -ISDQKRIDIMVGMGYSQEEIQESLSKMKY 354
>gi|46852166 MAP/microtubule affinity-regulating kinase 3 isoform c
[Homo sapiens]
Length = 729
Score = 31.2 bits (69), Expect = 2.4
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 312 FMDAVCMQLVGRHLHLASPVQESPFYVLIETSGSNAGHDAEKLGHFLEHALGSGLVTDGT 371
+M C L+ R L L +P++ +++ NAGH+ ++L F+E L
Sbjct: 275 YMSTDCENLLKRFLVL-NPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELD-------- 325
Query: 372 MATDQRKVKMLWAL---RERITEALSRDGY 398
+DQ+++ ++ + +E I E+LS+ Y
Sbjct: 326 -ISDQKRIDIMVGMGYSQEEIQESLSKMKY 354
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 31.2 bits (69), Expect = 2.4
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 15 RGAPGAAGSWGRPVGPLARRGCCSAPGTPEVP 46
RG GAAG G P GP+ RG APG P P
Sbjct: 951 RGEKGAAGEEGSP-GPVGPRGDPGAPGLPGPP 981
Score = 29.6 bits (65), Expect = 7.0
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 16 GAPGAAGSWGR--PVGPLARRGCCSAPGTPEVPLTRERYP 53
G PG G G P+GP RG PG P V L E P
Sbjct: 1521 GRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGP 1560
>gi|13129120 trafficking protein particle complex 6A [Homo sapiens]
Length = 173
Score = 30.8 bits (68), Expect = 3.1
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 440 LHLNVTAEAFS------PSLLAALEPHVYEWTAGQQGSVSAEHGVGFRKRDVLGYSKPPG 493
LH + AE ++ P + A L T GQ+ S+S G+GFR LG P
Sbjct: 10 LHTEMVAELWAHDPDPGPGVSAGLRGEEAGATKGQKMSLSVLEGMGFRVGQALGERLPRE 69
Query: 494 ALQLMQQLKAL 504
L ++L L
Sbjct: 70 TLAFREELDVL 80
>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
Length = 585
Score = 30.8 bits (68), Expect = 3.1
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 14/75 (18%)
Query: 15 RGAPGAAGSWGRPVGPLARRGCCSAPGTPEV-------------PLTRERYPVRRLPFST 61
+ P + G GRP GP A R C P + E P R P RRL FS
Sbjct: 332 QAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLRAALPSRRL-FSR 390
Query: 62 VSKQDLAAFERIVPG 76
+ Q L ++ PG
Sbjct: 391 GAAQQLPCCYKLHPG 405
>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
sapiens]
Length = 585
Score = 30.8 bits (68), Expect = 3.1
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 14/75 (18%)
Query: 15 RGAPGAAGSWGRPVGPLARRGCCSAPGTPEV-------------PLTRERYPVRRLPFST 61
+ P + G GRP GP A R C P + E P R P RRL FS
Sbjct: 332 QAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRLRAALPSRRL-FSR 390
Query: 62 VSKQDLAAFERIVPG 76
+ Q L ++ PG
Sbjct: 391 GAAQQLPCCYKLHPG 405
>gi|37537554 hypothetical protein FLJ37538 [Homo sapiens]
Length = 841
Score = 30.8 bits (68), Expect = 3.1
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 22 GSWGRPVGPLARRGCCSAPGTPEVPLTRERYPVRRLPFSTVSKQDLAAFERIVPGGVVTD 81
G+ G G L RGC ++P + P P+ P + + A+E + GGV+
Sbjct: 516 GAMGAAAGVLHHRGCLASPHSLPDPTVGPLTPLWTYPATAAGLKRPPAYESLKAGGVLNK 575
Query: 82 PEALQAPN 89
+ AP+
Sbjct: 576 GCGVGAPS 583
>gi|4503583 epoxide hydrolase 1 [Homo sapiens]
Length = 455
Score = 30.4 bits (67), Expect = 4.1
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 257 GSEGTLGIITTVSILCPPKPRAVNVAFLGCPGFAEVLQTFSTCKGMLGEILSAFEFMDAV 316
G G+L I T ++ L P + +++ A VL FST +LG+ F
Sbjct: 225 GDWGSL-ICTNMAQLVPSHVKGLHL------NMALVLSNFSTLTLLLGQRFGRF------ 271
Query: 317 CMQLVGRHLHLASPVQESPFYVLIETSG 344
+ L R + L PV+E FY L+ SG
Sbjct: 272 -LGLTERDVELLYPVKEKVFYSLMRESG 298
>gi|209862837 epoxide hydrolase 1 [Homo sapiens]
Length = 455
Score = 30.4 bits (67), Expect = 4.1
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 257 GSEGTLGIITTVSILCPPKPRAVNVAFLGCPGFAEVLQTFSTCKGMLGEILSAFEFMDAV 316
G G+L I T ++ L P + +++ A VL FST +LG+ F
Sbjct: 225 GDWGSL-ICTNMAQLVPSHVKGLHL------NMALVLSNFSTLTLLLGQRFGRF------ 271
Query: 317 CMQLVGRHLHLASPVQESPFYVLIETSG 344
+ L R + L PV+E FY L+ SG
Sbjct: 272 -LGLTERDVELLYPVKEKVFYSLMRESG 298
>gi|13375618 24-dehydrocholesterol reductase precursor [Homo
sapiens]
Length = 516
Score = 30.4 bits (67), Expect = 4.1
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 215 RYGSLHGTVLGLEVVLADGTVLDCLTSLRKDNTGYDLKQLFIGSEGTLGIITTVSILCPP 274
+YG E+VLADG+ + C S +N+ DL S GTLG + I P
Sbjct: 179 KYGLFQHICTAYELVLADGSFVRCTPS---ENS--DLFYAVPWSCGTLGFLVAAEIRIIP 233
Query: 275 KPRAVNVAFLGCPGFAEVLQTFS 297
+ V + F G + F+
Sbjct: 234 AKKYVKLRFEPVRGLEAICAKFT 256
>gi|239756163 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 30.4 bits (67), Expect = 4.1
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 3 PRRPLAWPAWL---LRGAPGAAGSWGRPVGPLARRGCCSA-PGTPEVPLTRERYPVRRLP 58
P RP P L LRG G G GP R C PG P +P+T R+P LP
Sbjct: 121 PNRPRPAPHLLGHRLRGPGGHKGP-----GPARGRPCPRCLPGLPGLPITHIRFPAAPLP 175
>gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo
sapiens]
Length = 193
Score = 30.4 bits (67), Expect = 4.1
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 3 PRRPLAWPAWL---LRGAPGAAGSWGRPVGPLARRGCCSA-PGTPEVPLTRERYPVRRLP 58
P RP P L LRG G G GP R C PG P +P+T R+P LP
Sbjct: 121 PNRPRPAPHLLGHRLRGPGGHKGP-----GPARGRPCPRCLPGLPGLPITHIRFPAAPLP 175
>gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo
sapiens]
Length = 193
Score = 30.4 bits (67), Expect = 4.1
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 3 PRRPLAWPAWL---LRGAPGAAGSWGRPVGPLARRGCCSA-PGTPEVPLTRERYPVRRLP 58
P RP P L LRG G G GP R C PG P +P+T R+P LP
Sbjct: 121 PNRPRPAPHLLGHRLRGPGGHKGP-----GPARGRPCPRCLPGLPGLPITHIRFPAAPLP 175
>gi|217035113 organic solute transporter alpha [Homo sapiens]
Length = 340
Score = 30.4 bits (67), Expect = 4.1
Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 21/139 (15%)
Query: 36 CCSAPGTPEVPLTRERYPVRRL-----PFSTVSKQDLAAFERIVPGGVVTDPEALQAPNV 90
CC P P + LTR++ + L F ++ + F +VP G+ + +
Sbjct: 161 CCCCPCCPRLLLTRKKLQLLMLGPFQYAFLKITLTLVGLF--LVPDGIYDPADISEGSTA 218
Query: 91 DWLRTLRGCSKVLLRPRTSEEVSHILR-HCHERNLAVNPQGGNTGMVGGSVPVFDEIILS 149
W+ T G S LL T +S R H E+N+ G +F +++
Sbjct: 219 LWINTFLGVS-TLLALWTLGIISRQARLHLGEQNM------------GAKFALFQVLLIL 265
Query: 150 TARMNRVLSFHSVSGILVC 168
TA + S + G + C
Sbjct: 266 TALQPSIFSVLANGGQIAC 284
>gi|21955174 kinesin family member C2 [Homo sapiens]
Length = 838
Score = 30.0 bits (66), Expect = 5.4
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 6 PLAWPAWLLRGAPGAAGSWGRPVGPLARRGCCSAPGTPEVPLTRERYPVRRLPFSTVSKQ 65
P W W G PGAAGS P L +PG P PL R V P T ++
Sbjct: 751 PTEWVKWSW-GQPGAAGSRAPPGRLLPSAPTLRSPG-PPAPL-RRPLAVLHAPVPTTARA 807
Query: 66 DLAAFERIVPGGVVTDP 82
L+ +R P + P
Sbjct: 808 RLSRPQRACPSSPGSRP 824
>gi|169169865 PREDICTED: hypothetical protein LOC285754 [Homo sapiens]
Length = 1151
Score = 29.6 bits (65), Expect = 7.0
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Query: 389 ITEALSRDGYVYKYDLSLPVERLYDIVTDLRARLGPHAKHVVG--YGHLGDGNLHLNVTA 446
IT L G V +Y + V + ++ + + + K + H G N+ + +
Sbjct: 998 ITSLLEDSGRVDRYSPTALVLAISEVDDNQIGKFSFYTKEAILKLLLHSGVENMQVTLAC 1057
Query: 447 EAFSPSLLAALEPHVYEWTAGQQGSVSAEHGVGFRKRDVLGYSKPPGA 494
+A + L A VY + QGS A V R+ G S PP A
Sbjct: 1058 QAAQKNALMAAVQQVYFYCT-PQGSCPANVKVSLHDREARGISSPPPA 1104
>gi|169168870 PREDICTED: hypothetical protein LOC285754 [Homo sapiens]
Length = 1151
Score = 29.6 bits (65), Expect = 7.0
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Query: 389 ITEALSRDGYVYKYDLSLPVERLYDIVTDLRARLGPHAKHVVG--YGHLGDGNLHLNVTA 446
IT L G V +Y + V + ++ + + + K + H G N+ + +
Sbjct: 998 ITSLLEDSGRVDRYSPTALVLAISEVDDNQIGKFSFYTKEAILKLLLHSGVENMQVTLAC 1057
Query: 447 EAFSPSLLAALEPHVYEWTAGQQGSVSAEHGVGFRKRDVLGYSKPPGA 494
+A + L A VY + QGS A V R+ G S PP A
Sbjct: 1058 QAAQKNALMAAVQQVYFYCT-PQGSCPANVKVSLHDREARGISSPPPA 1104
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,748,388
Number of Sequences: 37866
Number of extensions: 1030602
Number of successful extensions: 2657
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2613
Number of HSP's gapped (non-prelim): 77
length of query: 521
length of database: 18,247,518
effective HSP length: 107
effective length of query: 414
effective length of database: 14,195,856
effective search space: 5877084384
effective search space used: 5877084384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.