Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PLEKHJ1 Sequence: fasta or formatted (149aa) NCBI GI: 8922333
Description:

pleckstrin homology domain containing, family J member 1

Referenced in:

Inositol Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         10           2
 C cysteine            2.0          3           1
 D aspartate           2.0          3           1
 E glutamate          14.1         21           2
 F phenylalanine       6.7         10           1
 G glycine             5.4          8           1
 H histidine           0.7          1           1
 I isoleucine          3.4          5           1
 K lysine              5.4          8           2
 L leucine            10.1         15           3
 M methionine          3.4          5           1
 N asparagine          2.0          3           1
 P proline             4.0          6           1
 Q glutamine           4.7          7           1
 R arginine           11.4         17           2
 S serine              6.7         10           2
 T threonine           2.0          3           1
 V valine              5.4          8           2
 W tryptophan          0.7          1           1
 Y tyrosine            3.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pleckstrin homology domain containing, family J membe... 
FAM109A               0.106   hypothetical protein LOC144717 
RASGRF2               0.066   Ras protein-specific guanine nucleotide-releasing fa...
RASGRF1               0.059   Ras protein-specific guanine nucleotide-releasing f...
RASGRF1               0.059   Ras protein-specific guanine nucleotide-releasing fa...
FAM109B               0.040   hypothetical protein LOC150368 
SH3BP2                0.033   SH3-domain binding protein 2 isoform b 
SH3BP2                0.033   SH3-domain binding protein 2 isoform c 
SH3BP2                0.033   SH3-domain binding protein 2 isoform a 
SH3BP2                0.033   SH3-domain binding protein 2 isoform a 
ASAP2                 0.033   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
ASAP2                 0.033   ArfGAP with SH3 domain, ankyrin repeat and PH domain ...
ADAP2                 0.029   centaurin-alpha 2 protein 
FGD6                  0.026   FYVE, RhoGEF and PH domain containing 6 
ARHGAP25              0.026   Rho GTPase activating protein 25 isoform a 
ARHGAP25              0.026   Rho GTPase activating protein 25 isoform b 
MYH9                  0.022   myosin, heavy polypeptide 9, non-muscle 
ASAP3                 0.018   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
ASAP3                 0.018   ArfGAP with SH3 domain, ankyrin repeat and PH domain...
PLEKHA6               0.018   phosphoinositol 3-phosphate-binding protein-3 
ARAP1                 0.018   ArfGAP with RhoGAP domain, ankyrin repeat and PH do...
ARAP1                 0.018   ArfGAP with RhoGAP domain, ankyrin repeat and PH do...
ARAP1                 0.018   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
ADAP1                 0.018   centaurin, alpha 1 
MYH10                 0.011   myosin, heavy polypeptide 10, non-muscle 
MYH14                 0.011   myosin, heavy chain 14 isoform 1 
MYH14                 0.011   myosin, heavy chain 14 isoform 2 
MYH14                 0.011   myosin, heavy chain 14 isoform 3 
FERMT3                0.011   fermitin family homolog 3 short form 
FERMT3                0.011   fermitin family homolog 3 long form 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press