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Search of human proteins with 24308436
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308436 methionine-tRNA synthetase 2 precursor [Homo
sapiens]
(593 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308436 methionine-tRNA synthetase 2 precursor [Homo sapiens] 1238 0.0
gi|14043022 methionyl-tRNA synthetase [Homo sapiens] 126 5e-29
gi|5454158 valyl-tRNA synthetase [Homo sapiens] 45 2e-04
gi|108773810 leucyl-tRNA synthetase [Homo sapiens] 43 7e-04
gi|55741845 valyl-tRNA synthetase 2, mitochondrial [Homo sapiens] 36 0.11
gi|46852147 mitochondrial isoleucine tRNA synthetase [Homo sapiens] 35 0.25
gi|30410805 CUB domain-containing protein 1 isoform 1 [Homo sapi... 33 0.97
gi|30410803 CUB domain-containing protein 1 isoform 2 [Homo sapi... 33 0.97
gi|13375695 cysteinyl-tRNA synthetase 2, mitochondrial [Homo sap... 32 1.3
gi|4504191 mutS homolog 6 [Homo sapiens] 32 1.6
gi|7661872 leucyl-tRNA synthetase 2, mitochondrial precursor [Ho... 32 1.6
gi|14916437 prostein [Homo sapiens] 32 1.6
gi|4557595 forkhead box F2 [Homo sapiens] 31 2.8
gi|74271888 lipin 3 [Homo sapiens] 31 2.8
gi|227452255 zinc finger protein 29 isoform 2 [Homo sapiens] 31 3.7
gi|94721239 isoleucine tRNA synthetase [Homo sapiens] 31 3.7
gi|94721241 isoleucine tRNA synthetase [Homo sapiens] 31 3.7
gi|63176661 zinc finger protein 29 isoform 1 [Homo sapiens] 31 3.7
gi|55769572 zinc finger protein 29 isoform 3 [Homo sapiens] 31 3.7
gi|38679905 tripartite motif-containing 65 [Homo sapiens] 30 6.3
gi|110735445 forkhead box F1 [Homo sapiens] 30 8.2
>gi|24308436 methionine-tRNA synthetase 2 precursor [Homo sapiens]
Length = 593
Score = 1238 bits (3204), Expect = 0.0
Identities = 593/593 (100%), Positives = 593/593 (100%)
Query: 1 MLRTSVLRLLGRTGASRLSLLEDFGPRYYSSGSLSAGDDACDVRAYFTTPIFYVNAAPHI 60
MLRTSVLRLLGRTGASRLSLLEDFGPRYYSSGSLSAGDDACDVRAYFTTPIFYVNAAPHI
Sbjct: 1 MLRTSVLRLLGRTGASRLSLLEDFGPRYYSSGSLSAGDDACDVRAYFTTPIFYVNAAPHI 60
Query: 61 GHLYSALLADALCRHRRLRGPSTAATRFSTGTDEHGLKIQQAAATAGLAPTELCDRVSEQ 120
GHLYSALLADALCRHRRLRGPSTAATRFSTGTDEHGLKIQQAAATAGLAPTELCDRVSEQ
Sbjct: 61 GHLYSALLADALCRHRRLRGPSTAATRFSTGTDEHGLKIQQAAATAGLAPTELCDRVSEQ 120
Query: 121 FQQLFQEAGISCTDFIRTTEARHRVAVQHFWGVLKSRGLLYKGVYEGWYCASDECFLPEA 180
FQQLFQEAGISCTDFIRTTEARHRVAVQHFWGVLKSRGLLYKGVYEGWYCASDECFLPEA
Sbjct: 121 FQQLFQEAGISCTDFIRTTEARHRVAVQHFWGVLKSRGLLYKGVYEGWYCASDECFLPEA 180
Query: 181 KVTQQPGPSGDSFPVSLESGHPVSWTKEENYIFRLSQFRKPLQRWLRGNPQAITPEPFHH 240
KVTQQPGPSGDSFPVSLESGHPVSWTKEENYIFRLSQFRKPLQRWLRGNPQAITPEPFHH
Sbjct: 181 KVTQQPGPSGDSFPVSLESGHPVSWTKEENYIFRLSQFRKPLQRWLRGNPQAITPEPFHH 240
Query: 241 VVLQWLDEELPDLSVSRRSSHLHWGIPVPGDDSQTIYVWLDALVNYLTVIGYPNAEFKSW 300
VVLQWLDEELPDLSVSRRSSHLHWGIPVPGDDSQTIYVWLDALVNYLTVIGYPNAEFKSW
Sbjct: 241 VVLQWLDEELPDLSVSRRSSHLHWGIPVPGDDSQTIYVWLDALVNYLTVIGYPNAEFKSW 300
Query: 301 WPATSHIIGKDILKFHAIYWPAFLLGAGMSPPQRICVHSHWTVCGQKMSKSLGNVVDPRT 360
WPATSHIIGKDILKFHAIYWPAFLLGAGMSPPQRICVHSHWTVCGQKMSKSLGNVVDPRT
Sbjct: 301 WPATSHIIGKDILKFHAIYWPAFLLGAGMSPPQRICVHSHWTVCGQKMSKSLGNVVDPRT 360
Query: 361 CLNRYTVDGFRYFLLRQGVPNWDCDYYDEKVVKLLNSELADALGGLLNRCTAKRINPSET 420
CLNRYTVDGFRYFLLRQGVPNWDCDYYDEKVVKLLNSELADALGGLLNRCTAKRINPSET
Sbjct: 361 CLNRYTVDGFRYFLLRQGVPNWDCDYYDEKVVKLLNSELADALGGLLNRCTAKRINPSET 420
Query: 421 YPAFCTTCFPSEPGLVGPSVRAQAEDYALVSAVATLPKQVADHYDNFRIYKALEAVSSCV 480
YPAFCTTCFPSEPGLVGPSVRAQAEDYALVSAVATLPKQVADHYDNFRIYKALEAVSSCV
Sbjct: 421 YPAFCTTCFPSEPGLVGPSVRAQAEDYALVSAVATLPKQVADHYDNFRIYKALEAVSSCV 480
Query: 481 RQTNGFVQRHAPWKLNWESPVDAPWLGTVLHVALECLRVFGTLLQPVTPSLADKLLSRLG 540
RQTNGFVQRHAPWKLNWESPVDAPWLGTVLHVALECLRVFGTLLQPVTPSLADKLLSRLG
Sbjct: 481 RQTNGFVQRHAPWKLNWESPVDAPWLGTVLHVALECLRVFGTLLQPVTPSLADKLLSRLG 540
Query: 541 VSASERSLGELYFLPRFYGHPCPFEGRRLGPETGLLFPRLDQSRTWLVKAHRT 593
VSASERSLGELYFLPRFYGHPCPFEGRRLGPETGLLFPRLDQSRTWLVKAHRT
Sbjct: 541 VSASERSLGELYFLPRFYGHPCPFEGRRLGPETGLLFPRLDQSRTWLVKAHRT 593
>gi|14043022 methionyl-tRNA synthetase [Homo sapiens]
Length = 900
Score = 126 bits (317), Expect = 5e-29
Identities = 129/524 (24%), Positives = 209/524 (39%), Gaps = 53/524 (10%)
Query: 48 TTPIFYVNAAPHIGHLYSALL-ADALCRHRRLRGPSTAATRFSTGTDEHGLKIQQAAATA 106
T+ + YVN PH+G++ +L AD R+ RLR +T + GTDE+G + A
Sbjct: 269 TSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTL---YLCGTDEYGTATETKALEE 325
Query: 107 GLAPTELCDRVSEQFQQLFQEAGISCTDFIRTTEARHRVAVQHFWGVLKSRGLLYKGVYE 166
GL P E+CD+ +++ IS F RTT + Q + L RG + + E
Sbjct: 326 GLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQQLLKRGFVLQDTVE 385
Query: 167 GWYCASDECFLPEAKVTQ------QPGPSGDSFPVSLESGHPVSWTKEENYIFR------ 214
C FL + V GD + + V K + + R
Sbjct: 386 QLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDKCGKLINAVELKKPQCKVCRSCPVVQ 445
Query: 215 --------LSQFRKPLQRWL-RGNPQAITPEPFHHVVLQWLDEELPDLSVSRRSSHLHWG 265
L + K L+ WL R P + + WL + L ++R L WG
Sbjct: 446 SSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQFITRSWLRDGLKPRCITR---DLKWG 502
Query: 266 IPVP--GDDSQTIYVWLDALVNYLTVIGYPNAEFKSWWPATSHI-----IGKDILKFHAI 318
PVP G + + YVW DA + YL++ +++ WW + + KD + FH++
Sbjct: 503 TPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKNPEQVDLYQFMAKDNVPFHSL 562
Query: 319 YWPAFLLGA--GMSPPQRICVHSHWTVCGQKMSKSLG-NVVDPRTCLNRYTVDGFRYFLL 375
+P LGA + + + K SKS G V D +R++LL
Sbjct: 563 VFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIPADIWRFYLL 622
Query: 376 RQGVPNWDCDYYDEKVVKLLNSELADALGGLLNRCTAKRINPSETYPAFCTTCFPSEPGL 435
D + ++ NSEL + LG +NR F + F G
Sbjct: 623 YIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGM-----------FVSKFF----GG 667
Query: 436 VGPSVRAQAEDYALVSAVATLPKQVADHYDNFRIYKALEAVSSCVRQTNGFVQRHAPWKL 495
P + +D L++ V + + RI AL ++ + R N ++Q + PWK
Sbjct: 668 YVPEMVLTPDDQRLLAHVTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWKR 727
Query: 496 NWESPVDAPWLGTVLHVALECLRVFGTLLQPVTPSLADKLLSRL 539
S D GTV +A+ + +LQP P+++ + ++L
Sbjct: 728 IKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQL 771
>gi|5454158 valyl-tRNA synthetase [Homo sapiens]
Length = 1264
Score = 45.1 bits (105), Expect = 2e-04
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 272 DSQTIYVWLDALVNYLTVIGYPNA--EFKSWWPATSHIIGKDILKFHAIYWPAFLLGAGM 329
D + W + + L+++G+PN + ++P T G DIL F W A ++ G+
Sbjct: 783 DEDVLDTWFSSGLFPLSILGWPNQSEDLSVFYPGTLLETGHDILFF----WVARMVMLGL 838
Query: 330 SPPQRIC---VHSHWTVC---GQKMSKSLGNVVDPRTCLNRYTVDGFRYFLLRQGV 379
R+ V+ H V G+KMSKSLGNV+DP + ++ G LL +
Sbjct: 839 KLTGRLPFREVYLHAIVRDAHGRKMSKSLGNVIDPLDVIYGISLQGLHNQLLNSNL 894
Score = 29.6 bits (65), Expect = 8.2
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 54 VNAAPHIGHLYSALLADALCRHRRLRGPSTAATRFSTGTDEHGLKIQ 100
V + H+GH + + D+L R R+RG +T ++ G D G+ Q
Sbjct: 346 VTGSLHLGHALTNAIQDSLTRWHRMRGETTL---WNPGCDHAGIATQ 389
>gi|108773810 leucyl-tRNA synthetase [Homo sapiens]
Length = 1176
Score = 43.1 bits (100), Expect = 7e-04
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 296 EFKSWWPATSHIIGKDILKFHAIYWPAFLLGAGMSP------PQRICVHSHWTVCGQKMS 349
EF+ W+P + GKD++ H Y+ M P P + + H + +KMS
Sbjct: 661 EFEFWYPVDLRVSGKDLVPNHLSYY--LYNHVAMWPEQSDKWPTAVRANGHLLLNSEKMS 718
Query: 350 KSLGNVVDPRTCLNRYTVDGFRYFLLRQGVPNWDCDYYD 388
KS GN + +++++ DG R L G D ++ +
Sbjct: 719 KSTGNFLTLTQAIDKFSADGMRLALADAGDTVEDANFVE 757
Score = 31.2 bits (69), Expect = 2.8
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 23/129 (17%)
Query: 46 YFTT-PIFYVNAAPHIGHLYSALLADALCRHRRLRGPSTAATRFSTGTDEHGLKIQQAAA 104
YF T P Y+N H+GH +S + ++RL+G F G G+ I+ A
Sbjct: 46 YFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKG---KCCLFPFGLHCTGMPIKACAD 102
Query: 105 TAGL------APTELCDRVSEQFQQLFQEAGISCTDFIRTTEARHRV--------AVQHF 150
P + D E+ +E + D I +A+ + + ++
Sbjct: 103 KLKREIELYGCPPDFPDEEEEE-----EETSVKTEDIIIKDKAKGKKSKAAAKAGSSKYQ 157
Query: 151 WGVLKSRGL 159
WG++KS GL
Sbjct: 158 WGIMKSLGL 166
>gi|55741845 valyl-tRNA synthetase 2, mitochondrial [Homo sapiens]
Length = 1063
Score = 35.8 bits (81), Expect = 0.11
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 272 DSQTIYVWLDALVNYLTVIGYPNA--EFKSWWPATSHIIGKDILKFHAIYWPA--FLLGA 327
D + W + + + +G+P + ++P + G D+L ++W +LG
Sbjct: 579 DPDVLDTWFSSALFPFSALGWPQETPDLARFYPLSLLETGSDLL----LFWVGRMVMLGT 634
Query: 328 ---GMSPPQRICVHSHWTVC-GQKMSKSLGNVVDPRTCLN 363
G P ++ +H G+KMSKSLGNV+DPR ++
Sbjct: 635 QLTGQLPFSKVLLHPMVRDRQGRKMSKSLGNVLDPRDIIS 674
Score = 29.6 bits (65), Expect = 8.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 54 VNAAPHIGHLYSALLADALCRHRRLRGPSTAATRFSTGTDEHGLKIQ 100
V + HIGH + + DAL R R+RG + G+D G+ Q
Sbjct: 148 VTGSLHIGHALTVAIQDALVRWHRMRGDQVL---WVPGSDHAGIATQ 191
>gi|46852147 mitochondrial isoleucine tRNA synthetase [Homo sapiens]
Length = 1012
Score = 34.7 bits (78), Expect = 0.25
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 18/149 (12%)
Query: 53 YVNAAPHIGHLYSALLADALCRHRRLRGPSTAATRFSTGTDEHGLKIQ-QAAATAGLAPT 111
Y N PH+GH + +L D R + G + F G D HGL I+ + + G
Sbjct: 117 YANGDPHVGHALNKILKDIANRFHMMNG---SKIHFVPGWDCHGLPIEIKVLSELGREAQ 173
Query: 112 ELCDRVSEQFQQLFQEAGI--SCTDFIR------------TTEARHRVAVQHFWGVLKSR 157
L + + F +A I + FIR T + ++ + + +
Sbjct: 174 NLSAMEIRKKARSFAKAAIEKQKSAFIRWGIMADWNNCYYTFDGKYEAKQLRTFYQMYDK 233
Query: 158 GLLYKGVYEGWYCASDECFLPEAKVTQQP 186
GL+Y+ ++ S L EA++ P
Sbjct: 234 GLVYRSYKPVFWSPSSRTALAEAELEYNP 262
Score = 31.2 bits (69), Expect = 2.8
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 268 VPGDDSQTIYVWLDALVNYLTVIGYPNAEFKSWWPATSHIIGKDILKFHAIYWPAFLLGA 327
VPG D + +W D+ ++ V+ P+ A ++ GKD L ++ + LL +
Sbjct: 591 VPGQD--ILDIWFDSGTSWSYVLPGPDQR------ADLYLEGKDQL---GGWFQSSLLTS 639
Query: 328 ----GMSPPQRICVHSHWT-VCGQKMSKSLGNVVDPRTCLN 363
+P + + VH G+KMSKSLGNV+ P +N
Sbjct: 640 VAARKRAPYKTVIVHGFTLGEKGEKMSKSLGNVIHPDVVVN 680
>gi|30410805 CUB domain-containing protein 1 isoform 1 [Homo
sapiens]
Length = 836
Score = 32.7 bits (73), Expect = 0.97
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 561 PCPFEGRRLGPETGLLFPRLDQSRTWLVKAHRT 593
PCPF +L P T LL P L+++ W VKAH++
Sbjct: 103 PCPFGEVQLQPSTSLL-PTLNRTFIWDVKAHKS 134
>gi|30410803 CUB domain-containing protein 1 isoform 2 [Homo
sapiens]
Length = 343
Score = 32.7 bits (73), Expect = 0.97
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 561 PCPFEGRRLGPETGLLFPRLDQSRTWLVKAHRT 593
PCPF +L P T LL P L+++ W VKAH++
Sbjct: 103 PCPFGEVQLQPSTSLL-PTLNRTFIWDVKAHKS 134
>gi|13375695 cysteinyl-tRNA synthetase 2, mitochondrial [Homo
sapiens]
Length = 564
Score = 32.3 bits (72), Expect = 1.3
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 338 HSHWTVCGQKMSKSLGNVVDPRTCLNRYTVDGFRYFLLRQGVPNWDCDYYDEKVVKLLNS 397
H H +KMSKSL N + + L ++ D FR+F LR + DY D +++
Sbjct: 308 HLHAKGKEEKMSKSLKNYITIKDFLKTFSPDVFRFFCLRSSYRS-AIDYSDSAMLQA--Q 364
Query: 398 ELADALGGLLNRCTA 412
+L LG L A
Sbjct: 365 QLLLGLGSFLEDARA 379
>gi|4504191 mutS homolog 6 [Homo sapiens]
Length = 1360
Score = 32.0 bits (71), Expect = 1.6
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 228 GNPQAITPEPFHHVVLQWLDEELPDLSVSRRSSHLHWGIPVPGDDSQTIYVWLDALVNYL 287
G + P ++H L+WL EE RR H P D+ T+YV D L N
Sbjct: 355 GGDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDH-------PDFDASTLYVPEDFL-NSC 406
Query: 288 TVIGYPNAEFKSWWPATSH----IIGKDILKFHAIYWPAFLLG 326
T + WW S +I + KF+ +Y L+G
Sbjct: 407 T------PGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIG 443
>gi|7661872 leucyl-tRNA synthetase 2, mitochondrial precursor [Homo
sapiens]
Length = 903
Score = 32.0 bits (71), Expect = 1.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 343 VCGQKMSKSLGNVVDPRTCLNRYTVDGFRYFLLRQGVPNWD 383
V +KMSKS N VDP + +Y +D R ++L P D
Sbjct: 635 VTWEKMSKSKHNGVDPEEVVEQYGIDTIRLYILFAAPPEKD 675
>gi|14916437 prostein [Homo sapiens]
Length = 553
Score = 32.0 bits (71), Expect = 1.6
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 495 LNWESPVDAPWLGTVLHVALECLRVFGTLLQPVTPSLADKLLSRLGVSASERSLGELYFL 554
++W++ AP+LGT ECL FG L +A LL + E
Sbjct: 181 IDWDTSALAPYLGT----QEECL--FGLLTLIFLTCVAATLLVAEEAALGPTEPAEGLSA 234
Query: 555 PRFYGHPCPFEGRRLGPETGLLFPRLDQ 582
P H CP R G L PRL Q
Sbjct: 235 PSLSPHCCPCRARLAFRNLGALLPRLHQ 262
>gi|4557595 forkhead box F2 [Homo sapiens]
Length = 444
Score = 31.2 bits (69), Expect = 2.8
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 144 RVAVQHFWGVLKSRGLLYKGVYEGW------YCASDECFLPEAKVTQQPGPSGDSFPVSL 197
R+ + + L++R ++G Y+GW + +ECF+ K +PG
Sbjct: 120 RLTLSEIYQFLQARFPFFRGAYQGWKNSVRHNLSLNECFIKLPKGLGRPG---------- 169
Query: 198 ESGHPVSWTKEENYIFRLSQFRKPLQRWLRGNPQAITPEPFHHVV 242
GH + ++F FR+ R R QA+ P +H VV
Sbjct: 170 -KGHYWTIDPASEFMFEEGSFRR-RPRGFRRKCQALKP-MYHRVV 211
>gi|74271888 lipin 3 [Homo sapiens]
Length = 851
Score = 31.2 bits (69), Expect = 2.8
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 80 GPSTAATRFSTGTDEHGLKIQQAAATAGLAP 110
GPST +T + G D GL IQQ A A L P
Sbjct: 279 GPSTPSTSVAGGVDPLGLPIQQTEAGADLQP 309
>gi|227452255 zinc finger protein 29 isoform 2 [Homo sapiens]
Length = 150
Score = 30.8 bits (68), Expect = 3.7
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 173 DECFLPEAKVTQQPGPSGDSFPVSLESGHPVSWTKEENYIFRLSQFRKPLQRWLRGNPQA 232
D+ ++ EA V Q+ GP + FP S G P L + R+ +RWLR P+
Sbjct: 37 DDSWVQEA-VLQEDGPESEPFPQSAGKGGPQEEVTRGPQ-GALGRLRELCRRWLR--PEV 92
Query: 233 ITPEPFHHV----VLQWLDEELPDLS 254
T E + + WL E P+ S
Sbjct: 93 HTKEQMLTMLPKEIQAWLQEHRPESS 118
>gi|94721239 isoleucine tRNA synthetase [Homo sapiens]
Length = 1262
Score = 30.8 bits (68), Expect = 3.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 345 GQKMSKSLGNVVDPRTCLNRYTVDGFRYFLLRQGV 379
GQKMSK N DP + + +Y D R +L+ V
Sbjct: 598 GQKMSKRKKNYPDPVSIIQKYGADALRLYLINSPV 632
>gi|94721241 isoleucine tRNA synthetase [Homo sapiens]
Length = 1262
Score = 30.8 bits (68), Expect = 3.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 345 GQKMSKSLGNVVDPRTCLNRYTVDGFRYFLLRQGV 379
GQKMSK N DP + + +Y D R +L+ V
Sbjct: 598 GQKMSKRKKNYPDPVSIIQKYGADALRLYLINSPV 632
>gi|63176661 zinc finger protein 29 isoform 1 [Homo sapiens]
Length = 614
Score = 30.8 bits (68), Expect = 3.7
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 173 DECFLPEAKVTQQPGPSGDSFPVSLESGHPVSWTKEENYIFRLSQFRKPLQRWLRGNPQA 232
D+ ++ EA V Q+ GP + FP S G P L + R+ +RWLR P+
Sbjct: 37 DDSWVQEA-VLQEDGPESEPFPQSAGKGGPQEEVTRGPQ-GALGRLRELCRRWLR--PEV 92
Query: 233 ITPEPFHHV----VLQWLDEELPDLS 254
T E + + WL E P+ S
Sbjct: 93 HTKEQMLTMLPKEIQAWLQEHRPESS 118
>gi|55769572 zinc finger protein 29 isoform 3 [Homo sapiens]
Length = 146
Score = 30.8 bits (68), Expect = 3.7
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 173 DECFLPEAKVTQQPGPSGDSFPVSLESGHPVSWTKEENYIFRLSQFRKPLQRWLRGNPQA 232
D+ ++ EA V Q+ GP + FP S G P L + R+ +RWLR P+
Sbjct: 37 DDSWVQEA-VLQEDGPESEPFPQSAGKGGPQEEVTRGPQ-GALGRLRELCRRWLR--PEV 92
Query: 233 ITPEPFHHV----VLQWLDEELPDLS 254
T E + + WL E P+ S
Sbjct: 93 HTKEQMLTMLPKEIQAWLQEHRPESS 118
>gi|38679905 tripartite motif-containing 65 [Homo sapiens]
Length = 517
Score = 30.0 bits (66), Expect = 6.3
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 15/158 (9%)
Query: 62 HLYSALLADALCRHRRLRGPSTAATRFSTGTDEHGLKIQQAAATAGLAPTELCDRVSEQF 121
H + L A+ L R +LR + +T + L++++ ++ + L VS +F
Sbjct: 125 HERALLDAERLKREAQLRASLEVTQQQATQAEGQLLELRKQSSQIQNSACILASWVSGKF 184
Query: 122 QQLFQEAGISCTDFIRTTEARHRVAVQ-----------HFWGVLKSRGLLYKGVYEGWYC 170
L Q I T +R+ E A+ H V + G + + E
Sbjct: 185 SSLLQALEIQHTTALRSIEVAKTQALAQARDEEQRLRVHLEAVAR-HGCRIRELLEQ--- 240
Query: 171 ASDECFLPEAKVTQQPGPSGDSFPVSLESGHPVSWTKE 208
++ FL E+++ Q PGP G P+ + + K+
Sbjct: 241 VDEQTFLQESQLLQPPGPLGPLTPLQWDEDQQLGDLKQ 278
>gi|110735445 forkhead box F1 [Homo sapiens]
Length = 379
Score = 29.6 bits (65), Expect = 8.2
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 144 RVAVQHFWGVLKSRGLLYKGVYEGW------YCASDECFLPEAKVTQQPGPSGDSFPVSL 197
R+ + + L+SR ++G Y+GW + +ECF+ K +PG
Sbjct: 68 RLTLSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPG---------- 117
Query: 198 ESGHPVSWTKEENYIFRLSQFRKPLQRWLRGNPQAITP 235
GH + ++F FR+ R R QA+ P
Sbjct: 118 -KGHYWTIDPASEFMFEEGSFRR-RPRGFRRKCQALKP 153
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,976,125
Number of Sequences: 37866
Number of extensions: 1197501
Number of successful extensions: 2355
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2330
Number of HSP's gapped (non-prelim): 30
length of query: 593
length of database: 18,247,518
effective HSP length: 108
effective length of query: 485
effective length of database: 14,157,990
effective search space: 6866625150
effective search space used: 6866625150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.