Search of human proteins with 24307923

Search of human proteins with 24307923

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|24307923 ribulose-5-phosphate-3-epimerase isoform 2 [Homo
sapiens]
         (178 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24307923 ribulose-5-phosphate-3-epimerase isoform 2 [Homo sap...   365   e-101
gi|40385883 ribulose-5-phosphate-3-epimerase isoform 1 [Homo sap...   316   8e-87
gi|219879828 rcRPE protein [Homo sapiens]                             300   4e-82
gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo sa...    31   0.64 
gi|154240722 hypothetical protein LOC399949 isoform 1 [Homo sapi...    30   0.84 
gi|61744483 solute carrier family 3, member 2 isoform f [Homo sa...    30   1.4  
gi|61744481 solute carrier family 3, member 2 isoform e [Homo sa...    30   1.4  
gi|61744479 solute carrier family 3, member 2 isoform d [Homo sa...    30   1.4  
gi|65506891 solute carrier family 3, member 2 isoform c [Homo sa...    30   1.4  
gi|61744477 solute carrier family 3, member 2 isoform b [Homo sa...    30   1.4  
gi|61744475 solute carrier family 3, member 2 isoform a [Homo sa...    30   1.4  
gi|47578099 selenoprotein N, 1 isoform 1 precursor [Homo sapiens]      29   2.4  
gi|238908517 colony stimulating factor 2 receptor alpha chain is...    28   3.2  
gi|15718702 caspase 7 isoform beta [Homo sapiens]                      28   4.1  
gi|45269149 quinolinate phosphoribosyltransferase [Homo sapiens]       28   5.4  
gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo ...    28   5.4  
gi|59933284 RUN domain containing 2B [Homo sapiens]                    28   5.4  
gi|146198777 TSPY-like 6 [Homo sapiens]                                28   5.4  
gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ...    27   7.1  
gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ...    27   7.1  
gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ...    27   7.1  
gi|155030240 tRNA nucleotidyl transferase, CCA-adding, 1 [Homo s...    27   9.2  
gi|40789270 zinc finger protein 573 [Homo sapiens]                     27   9.2  

>gi|24307923 ribulose-5-phosphate-3-epimerase isoform 2 [Homo
           sapiens]
          Length = 178

 Score =  365 bits (937), Expect = e-101
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKSCSVTQAEVQWHSQ 60
           MHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKSCSVTQAEVQWHSQ
Sbjct: 1   MHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKSCSVTQAEVQWHSQ 60

Query: 61  GPLQVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSL 120
           GPLQVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSL
Sbjct: 61  GPLQVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSL 120

Query: 121 DIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR 178
           DIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
Sbjct: 121 DIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR 178


>gi|40385883 ribulose-5-phosphate-3-epimerase isoform 1 [Homo
           sapiens]
          Length = 228

 Score =  316 bits (809), Expect = 8e-87
 Identities = 160/178 (89%), Positives = 160/178 (89%), Gaps = 18/178 (10%)

Query: 1   MHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKSCSVTQAEVQWHSQ 60
           MHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMK              
Sbjct: 69  MHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMK-------------- 114

Query: 61  GPLQVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSL 120
               VGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSL
Sbjct: 115 ----VGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSL 170

Query: 121 DIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR 178
           DIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR
Sbjct: 171 DIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR 228


>gi|219879828 rcRPE protein [Homo sapiens]
          Length = 228

 Score =  300 bits (768), Expect = 4e-82
 Identities = 153/178 (85%), Positives = 154/178 (86%), Gaps = 18/178 (10%)

Query: 1   MHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKSCSVTQAEVQWHSQ 60
           MHMMVSKPEQWVKPMAVA ANQYTFHLEATENPG LIKDIRENGMK              
Sbjct: 69  MHMMVSKPEQWVKPMAVAEANQYTFHLEATENPGTLIKDIRENGMK-------------- 114

Query: 61  GPLQVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSL 120
               VGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFG QKFMEDMMPKVHWLRTQFPSL
Sbjct: 115 ----VGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGEQKFMEDMMPKVHWLRTQFPSL 170

Query: 121 DIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR 178
           DIE DGGVG DTVHKCAEAGANM VSGSAIMRSEDPRSVINLLRN+CSEAAQKRSLDR
Sbjct: 171 DIEGDGGVGSDTVHKCAEAGANMTVSGSAIMRSEDPRSVINLLRNICSEAAQKRSLDR 228


>gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo
           sapiens]
          Length = 322

 Score = 30.8 bits (68), Expect = 0.64
 Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 47  SCSVTQAEVQWHSQGPLQ-VGLAIKPGT 73
           S SVTQA VQWH+ G LQ + L +KP +
Sbjct: 267 SHSVTQAGVQWHNLGSLQPLPLGLKPSS 294


>gi|154240722 hypothetical protein LOC399949 isoform 1 [Homo
           sapiens]
          Length = 196

 Score = 30.4 bits (67), Expect = 0.84
 Identities = 14/23 (60%), Positives = 16/23 (69%)

Query: 46  KSCSVTQAEVQWHSQGPLQVGLA 68
           +S SVTQ EVQWH  G LQ  L+
Sbjct: 115 RSHSVTQNEVQWHDHGSLQPQLS 137


>gi|61744483 solute carrier family 3, member 2 isoform f [Homo
           sapiens]
          Length = 529

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 19/69 (27%)

Query: 108 PKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVC 167
           P + W  + FP    ++ G V            ANM V G    +SEDP S+++L R + 
Sbjct: 386 PVMLWDESSFP----DIPGAVS-----------ANMTVKG----QSEDPGSLLSLFRRLS 426

Query: 168 SEAAQKRSL 176
            + +++RSL
Sbjct: 427 DQRSKERSL 435


>gi|61744481 solute carrier family 3, member 2 isoform e [Homo
           sapiens]
          Length = 568

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 19/69 (27%)

Query: 108 PKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVC 167
           P + W  + FP    ++ G V            ANM V G    +SEDP S+++L R + 
Sbjct: 425 PVMLWDESSFP----DIPGAVS-----------ANMTVKG----QSEDPGSLLSLFRRLS 465

Query: 168 SEAAQKRSL 176
            + +++RSL
Sbjct: 466 DQRSKERSL 474


>gi|61744479 solute carrier family 3, member 2 isoform d [Homo
           sapiens]
          Length = 599

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 19/69 (27%)

Query: 108 PKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVC 167
           P + W  + FP    ++ G V            ANM V G    +SEDP S+++L R + 
Sbjct: 456 PVMLWDESSFP----DIPGAVS-----------ANMTVKG----QSEDPGSLLSLFRRLS 496

Query: 168 SEAAQKRSL 176
            + +++RSL
Sbjct: 497 DQRSKERSL 505


>gi|65506891 solute carrier family 3, member 2 isoform c [Homo
           sapiens]
          Length = 630

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 19/69 (27%)

Query: 108 PKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVC 167
           P + W  + FP    ++ G V            ANM V G    +SEDP S+++L R + 
Sbjct: 487 PVMLWDESSFP----DIPGAVS-----------ANMTVKG----QSEDPGSLLSLFRRLS 527

Query: 168 SEAAQKRSL 176
            + +++RSL
Sbjct: 528 DQRSKERSL 536


>gi|61744477 solute carrier family 3, member 2 isoform b [Homo
           sapiens]
          Length = 631

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 19/69 (27%)

Query: 108 PKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVC 167
           P + W  + FP    ++ G V            ANM V G    +SEDP S+++L R + 
Sbjct: 488 PVMLWDESSFP----DIPGAVS-----------ANMTVKG----QSEDPGSLLSLFRRLS 528

Query: 168 SEAAQKRSL 176
            + +++RSL
Sbjct: 529 DQRSKERSL 537


>gi|61744475 solute carrier family 3, member 2 isoform a [Homo
           sapiens]
          Length = 661

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 19/69 (27%)

Query: 108 PKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVC 167
           P + W  + FP    ++ G V            ANM V G    +SEDP S+++L R + 
Sbjct: 518 PVMLWDESSFP----DIPGAVS-----------ANMTVKG----QSEDPGSLLSLFRRLS 558

Query: 168 SEAAQKRSL 176
            + +++RSL
Sbjct: 559 DQRSKERSL 567


>gi|47578099 selenoprotein N, 1 isoform 1 precursor [Homo sapiens]
          Length = 590

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 15/27 (55%), Positives = 15/27 (55%)

Query: 38  KDIRENGMKSCSVTQAEVQWHSQGPLQ 64
           K I E    SCSVTQ  VQW S   LQ
Sbjct: 93  KPIAEKLTGSCSVTQTGVQWCSHSSLQ 119


>gi|238908517 colony stimulating factor 2 receptor alpha chain
           isoform f precursor [Homo sapiens]
          Length = 434

 Score = 28.5 bits (62), Expect = 3.2
 Identities = 13/18 (72%), Positives = 14/18 (77%)

Query: 47  SCSVTQAEVQWHSQGPLQ 64
           S SVTQA VQWH+ G LQ
Sbjct: 317 SHSVTQAGVQWHNLGSLQ 334


>gi|15718702 caspase 7 isoform beta [Homo sapiens]
          Length = 253

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 42  ENGMKSCSVTQAEVQWHSQGPLQ 64
           E  M+SCSVTQA VQ    G LQ
Sbjct: 146 EENMESCSVTQAGVQRRDLGRLQ 168


>gi|45269149 quinolinate phosphoribosyltransferase [Homo sapiens]
          Length = 297

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 104 EDMMPKVHWLRTQFPSLDIEVDGGVGPDTV 133
           E++ P    L+ QFPS+ +E  GG+  D +
Sbjct: 227 EELHPTATVLKAQFPSVAVEASGGITLDNL 256


>gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo
           sapiens]
          Length = 369

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 62  PLQVGLAIKPGTSVEYLAPWANQIDMALVMTVEP 95
           P   GLA  P +  E  +P  N+IDMAL   + P
Sbjct: 193 PRWTGLATSPRSPQESASPTLNRIDMALQTALPP 226


>gi|59933284 RUN domain containing 2B [Homo sapiens]
          Length = 249

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 49  SVTQAEVQWHSQGPLQ 64
           SVTQA VQWH  G LQ
Sbjct: 227 SVTQAGVQWHDLGSLQ 242


>gi|146198777 TSPY-like 6 [Homo sapiens]
          Length = 410

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 20/74 (27%), Positives = 27/74 (36%)

Query: 25  FHLEATENPGALIKDIRENGMKSCSVTQAEVQWHSQGPLQVGLAIKPGTSVEYLAPWANQ 84
           F     E PG    D+ E       V +        GPL VGL + P  S++      N 
Sbjct: 158 FSAPVDEKPGGEEMDVAEENRAIDEVNREAGPGPGPGPLNVGLHLNPLESIQLELDSVNA 217

Query: 85  IDMALVMTVEPGFG 98
                ++ VE  FG
Sbjct: 218 EADRALLQVERRFG 231


>gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo
           sapiens]
          Length = 299

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 11/13 (84%), Positives = 12/13 (92%)

Query: 45  MKSCSVTQAEVQW 57
           M+SCSVTQA VQW
Sbjct: 127 MESCSVTQAGVQW 139


>gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo
           sapiens]
          Length = 299

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 11/13 (84%), Positives = 12/13 (92%)

Query: 45  MKSCSVTQAEVQW 57
           M+SCSVTQA VQW
Sbjct: 127 MESCSVTQAGVQW 139


>gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo
           sapiens]
          Length = 299

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 11/13 (84%), Positives = 12/13 (92%)

Query: 45  MKSCSVTQAEVQW 57
           M+SCSVTQA VQW
Sbjct: 127 MESCSVTQAGVQW 139


>gi|155030240 tRNA nucleotidyl transferase, CCA-adding, 1 [Homo
           sapiens]
          Length = 434

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 2   HMMVSKPEQW-VKPMAVAGANQYTFHLEATENPGALIKDIRENGMKS 47
           H ++ + +QW + P  V+G +     + + +  GAL++ +RE   KS
Sbjct: 372 HCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKS 418


>gi|40789270 zinc finger protein 573 [Homo sapiens]
          Length = 607

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 45 MKSCSVTQAEVQWHSQGPLQ 64
          M+SCSV QA VQW     LQ
Sbjct: 1  MESCSVAQAGVQWPDLSSLQ 20


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,933,071
Number of Sequences: 37866
Number of extensions: 293674
Number of successful extensions: 580
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 23
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.