Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC3A2 Sequence: fasta or formatted (529aa) NCBI GI: 61744483
Description:

solute carrier family 3, member 2 isoform f

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [661aa] solute carrier family 3, member 2 isoform a
alt prot [631aa] solute carrier family 3, member 2 isoform b
alt prot [599aa] solute carrier family 3, member 2 isoform d
alt prot [568aa] solute carrier family 3, member 2 isoform e
alt prot [630aa] solute carrier family 3, member 2 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         50           5
 C cysteine            0.4          2           1
 D aspartate           6.0         32           2
 E glutamate           6.2         33           2
 F phenylalanine       4.0         21           1
 G glycine             8.1         43           1
 H histidine           1.5          8           1
 I isoleucine          2.8         15           2
 K lysine              5.3         28           3
 L leucine            15.5         82           4
 M methionine          1.7          9           1
 N asparagine          3.2         17           1
 P proline             4.5         24           1
 Q glutamine           4.7         25           2
 R arginine            4.3         23           2
 S serine              9.1         48           2
 T threonine           4.0         21           1
 V valine              4.9         26           2
 W tryptophan          2.5         13           2
 Y tyrosine            1.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 3, member 2 isoform f 
SLC3A2                1.000   solute carrier family 3, member 2 isoform e 
SLC3A2                1.000   solute carrier family 3, member 2 isoform d 
SLC3A2                1.000   solute carrier family 3, member 2 isoform c 
SLC3A2                1.000   solute carrier family 3, member 2 isoform b 
SLC3A2                1.000   solute carrier family 3, member 2 isoform a 
SLC3A1                0.098   solute carrier family 3, member 1 
DDX55                 0.008   DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 
LOC729020             0.007   rcRPE protein 
ESYT2                 0.007   family with sequence similarity 62 (C2 domain contai...
VWDE                  0.006   von Willebrand factor D and EGF domains 
MDN1                  0.005   MDN1, midasin homolog 
RNF19B                0.005   ring finger protein 19B isoform a 
RNF19B                0.005   ring finger protein 19B isoform b 
GPATCH1               0.005   G patch domain containing 1 
SPON2                 0.005   spondin 2, extracellular matrix protein 
SPON2                 0.005   spondin 2, extracellular matrix protein 
RPE                   0.005   ribulose-5-phosphate-3-epimerase isoform 2 
RPE                   0.005   ribulose-5-phosphate-3-epimerase isoform 1 
SYNPO2                0.005   synaptopodin 2 isoform c 
SYNPO2                0.005   synaptopodin 2 isoform b 
SYNPO2                0.005   synaptopodin 2 isoform a 
DSP                   0.004   desmoplakin isoform II 
DSP                   0.004   desmoplakin isoform I 
CHAF1B                0.004   chromatin assembly factor 1 subunit B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press