Guide to the Human Genome
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Name: SLC3A2 Sequence: fasta or formatted (568aa) NCBI GI: 61744481
Description:

solute carrier family 3, member 2 isoform e

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [661aa] solute carrier family 3, member 2 isoform a
alt prot [631aa] solute carrier family 3, member 2 isoform b
alt prot [599aa] solute carrier family 3, member 2 isoform d
alt prot [529aa] solute carrier family 3, member 2 isoform f
alt prot [630aa] solute carrier family 3, member 2 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         54           5
 C cysteine            0.4          2           1
 D aspartate           6.0         34           2
 E glutamate           6.3         36           2
 F phenylalanine       3.7         21           1
 G glycine             8.5         48           1
 H histidine           1.6          9           1
 I isoleucine          3.0         17           2
 K lysine              4.9         28           3
 L leucine            15.0         85           4
 M methionine          1.8         10           1
 N asparagine          3.0         17           1
 P proline             4.9         28           2
 Q glutamine           4.9         28           2
 R arginine            4.2         24           2
 S serine              9.5         54           2
 T threonine           3.9         22           1
 V valine              5.1         29           2
 W tryptophan          2.3         13           2
 Y tyrosine            1.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 3, member 2 isoform e 
SLC3A2                0.985   solute carrier family 3, member 2 isoform d 
SLC3A2                0.960   solute carrier family 3, member 2 isoform c 
SLC3A2                0.958   solute carrier family 3, member 2 isoform b 
SLC3A2                0.936   solute carrier family 3, member 2 isoform a 
SLC3A2                0.932   solute carrier family 3, member 2 isoform f 
SLC3A1                0.091   solute carrier family 3, member 1 
DDX55                 0.007   DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 
LOC729020             0.006   rcRPE protein 
NOLC1                 0.006   nucleolar and coiled-body phosphoprotein 1 
ESYT2                 0.006   family with sequence similarity 62 (C2 domain contai...
VWDE                  0.005   von Willebrand factor D and EGF domains 
PABPN1                0.005   poly(A) binding protein, nuclear 1 
MDN1                  0.005   MDN1, midasin homolog 
RNF19B                0.005   ring finger protein 19B isoform a 
RNF19B                0.005   ring finger protein 19B isoform b 
GPATCH1               0.005   G patch domain containing 1 
SPON2                 0.005   spondin 2, extracellular matrix protein 
SPON2                 0.005   spondin 2, extracellular matrix protein 
RPE                   0.005   ribulose-5-phosphate-3-epimerase isoform 2 
RPE                   0.005   ribulose-5-phosphate-3-epimerase isoform 1 
SYNPO2                0.005   synaptopodin 2 isoform c 
SYNPO2                0.005   synaptopodin 2 isoform b 
SYNPO2                0.005   synaptopodin 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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