Guide to the Human Genome
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Name: RPE Sequence: fasta or formatted (178aa) NCBI GI: 24307923
Description:

ribulose-5-phosphate-3-epimerase isoform 2

Referenced in:

Pentose Phosphate Pathway

Other entries for this name:
alt prot [228aa] ribulose-5-phosphate-3-epimerase isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         16           2
 C cysteine            1.7          3           1
 D aspartate           4.5          8           1
 E glutamate           6.7         12           1
 F phenylalanine       2.2          4           1
 G glycine             7.9         14           2
 H histidine           2.8          5           1
 I isoleucine          4.5          8           1
 K lysine              5.1          9           1
 L leucine             6.2         11           2
 M methionine          6.7         12           2
 N asparagine          3.9          7           1
 P proline             6.2         11           1
 Q glutamine           5.6         10           1
 R arginine            3.9          7           1
 S serine              6.7         12           1
 T threonine           3.9          7           1
 V valine              9.0         16           1
 W tryptophan          2.2          4           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribulose-5-phosphate-3-epimerase isoform 2 
RPE                   0.856   ribulose-5-phosphate-3-epimerase isoform 1 
LOC729020             0.809   rcRPE protein 
RPP30                 0.018   ribonuclease P/MRP 30kDa subunit isoform a 
C11orf88              0.015   hypothetical protein LOC399949 isoform 1 
SLC3A2                0.015   solute carrier family 3, member 2 isoform f 
SLC3A2                0.015   solute carrier family 3, member 2 isoform e 
SLC3A2                0.015   solute carrier family 3, member 2 isoform d 
SLC3A2                0.015   solute carrier family 3, member 2 isoform c 
SLC3A2                0.015   solute carrier family 3, member 2 isoform b 
SLC3A2                0.015   solute carrier family 3, member 2 isoform a 
SEPN1                 0.012   selenoprotein N, 1 isoform 1 precursor 
CSF2RA                0.009   colony stimulating factor 2 receptor alpha chain is...
CASP7                 0.009   caspase 7 isoform beta 
QPRT                  0.009   quinolinate phosphoribosyltransferase 
LOC100291212          0.009   PREDICTED: hypothetical protein XP_002347943 
RUNDC2B               0.009   RUN domain containing 2B 
TSPYL6                0.009   TSPY-like 6 
LOC100128682          0.006   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.006   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.006   PREDICTED: hypothetical protein LOC100128682 
TRNT1                 0.006   tRNA nucleotidyl transferase, CCA-adding, 1 
ZNF573                0.006   zinc finger protein 573 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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