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Search of human proteins with 240255430
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|240255430 hypothetical protein LOC100289135 [Homo sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|240255430 hypothetical protein LOC100289135 [Homo sapiens] 449 e-127
gi|239749150 PREDICTED: hypothetical protein XP_002346928 [Homo ... 406 e-114
gi|239754604 PREDICTED: similar to hCG1802898 [Homo sapiens] 402 e-112
gi|153070256 MAGI family member, X-linked isoform d [Homo sapiens] 40 0.001
gi|153070252 MAGI family member, X-linked isoform c [Homo sapiens] 38 0.006
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 37 0.010
gi|92091575 coiled-coil domain containing 57 [Homo sapiens] 37 0.010
gi|153070254 MAGI family member, X-linked isoform b [Homo sapiens] 37 0.010
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 37 0.017
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 37 0.017
gi|122937321 UNC homeobox [Homo sapiens] 37 0.017
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 36 0.022
gi|39812378 RAN binding protein 9 [Homo sapiens] 36 0.028
gi|169168886 PREDICTED: hypothetical protein [Homo sapiens] 35 0.037
gi|239742988 PREDICTED: hypothetical protein [Homo sapiens] 35 0.037
gi|153070258 MAGI family member, X-linked isoform a [Homo sapiens] 35 0.037
gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo sapi... 35 0.048
gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo sapi... 35 0.048
gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo ... 35 0.048
gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo sapi... 35 0.048
gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo sapi... 35 0.048
gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo sapi... 35 0.048
gi|56549696 E1A binding protein p400 [Homo sapiens] 35 0.048
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 35 0.063
gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens] 35 0.063
gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens] 35 0.063
gi|194272172 double homeobox, 4 [Homo sapiens] 35 0.063
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 35 0.063
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 35 0.063
gi|194272217 double homeobox, 4-like [Homo sapiens] 35 0.063
>gi|240255430 hypothetical protein LOC100289135 [Homo sapiens]
Length = 215
Score = 449 bits (1156), Expect = e-127
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MESTFRPGFRGSALPWEGGMPKAPEVTFARRALRACAGGAGGAGQAGGVCEAGADWGAQT 60
MESTFRPGFRGSALPWEGGMPKAPEVTFARRALRACAGGAGGAGQAGGVCEAGADWGAQT
Sbjct: 1 MESTFRPGFRGSALPWEGGMPKAPEVTFARRALRACAGGAGGAGQAGGVCEAGADWGAQT 60
Query: 61 CRATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAA 120
CRATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAA
Sbjct: 61 CRATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAA 120
Query: 121 SLSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDP 180
SLSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDP
Sbjct: 121 SLSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDP 180
Query: 181 ASPWGDRSVPELGGDLKPMVLTSTPWLRARLRGRG 215
ASPWGDRSVPELGGDLKPMVLTSTPWLRARLRGRG
Sbjct: 181 ASPWGDRSVPELGGDLKPMVLTSTPWLRARLRGRG 215
>gi|239749150 PREDICTED: hypothetical protein XP_002346928 [Homo
sapiens]
Length = 229
Score = 406 bits (1044), Expect = e-114
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 21 PKAPEVTFARRALRACAGGAGGAGQAGGVCEAGADWGAQTCRATWASGDLDHGADAGELR 80
PKAPEVTFARRALRACAGGAGGAGQAGGVCEAGADWGAQTCRATWASGDLDHGADAGELR
Sbjct: 35 PKAPEVTFARRALRACAGGAGGAGQAGGVCEAGADWGAQTCRATWASGDLDHGADAGELR 94
Query: 81 LGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGS 140
LGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGS
Sbjct: 95 LGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGS 154
Query: 141 EATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMV 200
EATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMV
Sbjct: 155 EATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMV 214
Query: 201 LTSTPWLRARLRGRG 215
LTSTPWLRARLRGRG
Sbjct: 215 LTSTPWLRARLRGRG 229
>gi|239754604 PREDICTED: similar to hCG1802898 [Homo sapiens]
Length = 229
Score = 402 bits (1032), Expect = e-112
Identities = 193/195 (98%), Positives = 194/195 (99%)
Query: 21 PKAPEVTFARRALRACAGGAGGAGQAGGVCEAGADWGAQTCRATWASGDLDHGADAGELR 80
PKAPEVTFARRALRACAGGAG AG+AGGVCEAGADWGAQTCRATWASGDLDHGADAGELR
Sbjct: 35 PKAPEVTFARRALRACAGGAGRAGKAGGVCEAGADWGAQTCRATWASGDLDHGADAGELR 94
Query: 81 LGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGS 140
LGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGS
Sbjct: 95 LGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGS 154
Query: 141 EATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMV 200
EATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMV
Sbjct: 155 EATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGDRSVPELGGDLKPMV 214
Query: 201 LTSTPWLRARLRGRG 215
LTSTPWLRARLRGRG
Sbjct: 215 LTSTPWLRARLRGRG 229
>gi|153070256 MAGI family member, X-linked isoform d [Homo sapiens]
Length = 253
Score = 40.0 bits (92), Expect = 0.001
Identities = 42/155 (27%), Positives = 59/155 (38%), Gaps = 13/155 (8%)
Query: 70 LDHGADAGEL--RLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSP 127
+DH G+L + + T+G +V+R R Q V RRP L+ G P
Sbjct: 88 VDHRPQVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRP-LETHPGKPRGVGEP 146
Query: 128 RSGSHFPVQDAGSE-------ATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDP 180
R G G E +TS+V PS+ T + P P P AAA P P
Sbjct: 147 RKGVDRSPDPGGPEVTGSRSSSTSLVQHPPSRT---TLKKTRGSPEPSPEAAADGPTVSP 203
Query: 181 ASPWGDRSVPELGGDLKPMVLTSTPWLRARLRGRG 215
+ ++ G P ++ S L L RG
Sbjct: 204 PERRAEDPNDQIPGSPGPWLVPSEERLSRALGVRG 238
>gi|153070252 MAGI family member, X-linked isoform c [Homo sapiens]
Length = 258
Score = 38.1 bits (87), Expect = 0.006
Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 18/160 (11%)
Query: 70 LDHGADAGEL--RLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSP 127
+DH G+L + + T+G +V+R R Q V RRP L+ G P
Sbjct: 88 VDHRPQVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRP-LETHPGKPRGVGEP 146
Query: 128 RSG--------SHFP----VQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGA 175
R G S P V + S +TS+V PS+ T + P P P AAA
Sbjct: 147 RKGVVPSWPDRSPDPGGPEVTGSRSSSTSLVQHPPSRT---TLKKTRGSPEPSPEAAADG 203
Query: 176 PGFDPASPWGDRSVPELGGDLKPMVLTSTPWLRARLRGRG 215
P P + ++ G P ++ S L L RG
Sbjct: 204 PTVSPPERRAEDPNDQIPGSPGPWLVPSEERLSRALGVRG 243
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 37.4 bits (85), Expect = 0.010
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 74 ADAGELRLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGG-----SPR 128
A+A EL L GR +GL + AR +R A + L L L G +PR
Sbjct: 1396 AEAAELGLRLSAAEGRAQGLEAELARVEVQRRAAEAQLGGLRSALRRGLGLGRAPSPAPR 1455
Query: 129 SGSHFPVQDAGSEATSVVARDPS--QDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWG 185
P +DA +E + PS + PG++ P P P + +P DP + G
Sbjct: 1456 PVPGSPARDAPAEGSGEGLNSPSTLECSPGSQ-----PPSPGPATSPASPDLDPEAVRG 1509
>gi|92091575 coiled-coil domain containing 57 [Homo sapiens]
Length = 915
Score = 37.4 bits (85), Expect = 0.010
Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 19/142 (13%)
Query: 38 GGAGGAGQAGGVCEAGADWGAQTCRATWASGDLDHGADAGELRLGRQRTRGRVRGLSVQR 97
GG+ AGQAGG +AG A G + G + L L + R ++ L V R
Sbjct: 628 GGSAQAGQAGGSVQAGQ-----------AGGSVQAGPVSSGLALRKLGDRVQLLNLLVTR 676
Query: 98 ARCRHLQRP--------AVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGSEATSVVARD 149
R + L+ P +PR D H L G H + G S +
Sbjct: 677 LRQKVLREPLEPAALQRELPREVDQVHLEVLELRKQVAELGKHLRIAQHGGAEPSGRKQP 736
Query: 150 PSQDLPGTRRDGTLGPRPQPPA 171
P+ D R+ + P+
Sbjct: 737 PASDAVALGREDAKSAEDEAPS 758
>gi|153070254 MAGI family member, X-linked isoform b [Homo sapiens]
Length = 262
Score = 37.4 bits (85), Expect = 0.010
Identities = 39/144 (27%), Positives = 54/144 (37%), Gaps = 11/144 (7%)
Query: 79 LRLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDA 138
L + + T+G +V+R R Q V RRP L+ G PR G
Sbjct: 108 LHINGESTQGLTHAQAVERIRAGGPQLHLVIRRP-LETHPGKPRGVGEPRKGVDRSPDPG 166
Query: 139 GSE-------ATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGDRSVPE 191
G E +TS+V PS+ T + P P P AAA P P + +
Sbjct: 167 GPEVTGSRSSSTSLVQHPPSRT---TLKKTRGSPEPSPEAAADGPTVSPPERRAEDPNDQ 223
Query: 192 LGGDLKPMVLTSTPWLRARLRGRG 215
+ G P ++ S L L RG
Sbjct: 224 IPGSPGPWLVPSEERLSRALGVRG 247
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 36.6 bits (83), Expect = 0.017
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 120 ASLSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFD 179
+S S S S S A + A + A P+ L G R +L P P PP +P
Sbjct: 123 SSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPSAA 182
Query: 180 PASPWG--DRSVPELGGDLK---PMVLTSTPWLRARL 211
+ G + + EL G P V+ S PW ARL
Sbjct: 183 AVAAVGRYPKPLAELPGRTPIFWPGVMQSPPWRDARL 219
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 36.6 bits (83), Expect = 0.017
Identities = 43/173 (24%), Positives = 63/173 (36%), Gaps = 15/173 (8%)
Query: 37 AGGAGGAGQAGGVCEA-GADWG-------AQTCRA--TWASGDLDHGADAGELRLGRQRT 86
+ G GG+G GGV A G WG +C + W G L L G
Sbjct: 429 SSGGGGSGGGGGVGGAGGGPWGPAPAWCPCGSCCSWWKWLLGLLLTWLLLLGLLFGLIAL 488
Query: 87 RGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFPVQDAGSEATSVV 146
VR L + ++R +P +D L G +P +G+ S++ +
Sbjct: 489 AEEVRKLKARVDELERIRRSILPYGDSMDRIEKDRLQGMAPAAGADLDKIGLHSDSQEEL 548
Query: 147 ARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGDRSVPELGGDLKPM 199
+ L + +G L P P G+PG P GDR P G P+
Sbjct: 549 WMFVRKKLMMEQENGNLRGSPGPKGDMGSPG-----PKGDRGFPGTPGIPGPL 596
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 36.6 bits (83), Expect = 0.017
Identities = 37/108 (34%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 106 PAVPRRPDLD-HFLAASLSGGSPRSGSHFPVQDA-GSEATSVVARDPSQDLPGTRRD--- 160
PAVP P F A S GG+P S DA S A P +DL
Sbjct: 413 PAVPPAPPAQASFGAFSGPGGAPDSAFARRSPDAVASPGAPAPAPAPFRDLASAAATEGG 472
Query: 161 -------GTLGPRPQPPAAAGAPGFDPASPWGDRS---VPELGGDLKP 198
GT GP P PPA + PG P SP + + VPE G P
Sbjct: 473 GGDCADAGTAGPAPPPPAPSPRPGPRPPSPAEEPATCGVPEPGAAAGP 520
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 36.2 bits (82), Expect = 0.022
Identities = 57/197 (28%), Positives = 73/197 (37%), Gaps = 23/197 (11%)
Query: 26 VTFARRALRACAGGAGGAGQAGGVCEAGADWGAQTCRATWASGDLDHGADAGELRLGRQR 85
V +RRA A A A + + C WG Q+ AS +D A L
Sbjct: 332 VAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQST----ASSFVDSSLSAFAL---LPL 384
Query: 86 TRGRVRGLSVQRARCRHLQRPAVPR------RPDLDHFLAASLSG--GSPRSGSHFPVQD 137
GR RG + A C QRP R R +LD +L G GS R P +
Sbjct: 385 QGGRDRGGDAEGASC-SWQRPPGERGSQEIPRGELD-LSMTNLRGAEGSMRGARREPEEP 442
Query: 138 AGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGF-DPASPWGDRSVPELGGDL 196
G+ A AR LP T R L R + +G P + P SP S D
Sbjct: 443 EGAVAAR-AARGQGGRLPRTGRYAALRRR----STSGLPDYRAPPSPEPPPSPGSADPDS 497
Query: 197 KPMVLTSTPWLRARLRG 213
P+ ++P RL G
Sbjct: 498 SPLAKAASPSPPLRLEG 514
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 35.8 bits (81), Expect = 0.028
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 119 AASLSGGSPRSGSHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGF 178
A S GSP G+ + G+ A +++ P P T P P PPA+A AP
Sbjct: 43 AGSSPAGSPGGGAGG--EGLGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPAS 100
Query: 179 DPASPWGDRSVPELGG 194
P +P G + P G
Sbjct: 101 GPPAPPGLAAGPGPAG 116
>gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 35.4 bits (80), Expect = 0.037
Identities = 54/172 (31%), Positives = 67/172 (38%), Gaps = 41/172 (23%)
Query: 18 GGMPKAPEVTFARRALRACAGGAGGAG---QAGGVCEAGADW--GAQTCRATWASGDLDH 72
GG+ A E R ++RA + +G G +A G GA GA A +L
Sbjct: 79 GGLAAAGE----RNSVRAVSFSSGRVGVREEAAGHLAVGAAGLTGAHADLAVGRGAELAQ 134
Query: 73 --GADAGELRLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSG 130
GADA + R RA R L R P RP AA L+ G + G
Sbjct: 135 LLGADAAAAAAVQHEAHAR-------RAARRRLVR--APARP------AAVLADGRLQGG 179
Query: 131 SHFPVQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPAS 182
+ G+ A LPG R P QPPAAAGAPG PA+
Sbjct: 180 QGGQRRSVGAHA-----------LPGRPRV----PPWQPPAAAGAPGAYPAA 216
>gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]
Length = 470
Score = 35.4 bits (80), Expect = 0.037
Identities = 54/168 (32%), Positives = 66/168 (39%), Gaps = 39/168 (23%)
Query: 18 GGMPKAPEVTFARRALRACAGGAGGAG---QAGGVCEAGADWGAQTCRATWASGDLDHGA 74
GG+ A E R ++RA + +G G +A G GA G A A L GA
Sbjct: 277 GGLAAAGE----RNSVRAVSFSSGRVGVREEAAGHLAVGAA-GLTGAHADLALAQL-LGA 330
Query: 75 DAGELRLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSGSHFP 134
DA + R RA R L R P RP AA L+ G + G
Sbjct: 331 DAAAAAAVQHEAHAR-------RAARRRLVR--APARP------AAVLADGRLQGGQGGQ 375
Query: 135 VQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPAS 182
+ G+ A LPG R P QPPAAAGAPG PA+
Sbjct: 376 RRSVGAHA-----------LPGRPRV----PPWQPPAAAGAPGAYPAA 408
>gi|153070258 MAGI family member, X-linked isoform a [Homo sapiens]
Length = 334
Score = 35.4 bits (80), Expect = 0.037
Identities = 41/149 (27%), Positives = 57/149 (38%), Gaps = 16/149 (10%)
Query: 79 LRLGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRSG-------- 130
L + + T+G +V+R R Q V RRP L+ G PR G
Sbjct: 175 LHINGESTQGLTHAQAVERIRAGGPQLHLVIRRP-LETHPGKPRGVGEPRKGVVPSWPDR 233
Query: 131 SHFP----VQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGAPGFDPASPWGD 186
S P V + S +TS+V PS+ T + P P P AAA P P +
Sbjct: 234 SPDPGGPEVTGSRSSSTSLVQHPPSRT---TLKKTRGSPEPSPEAAADGPTVSPPERRAE 290
Query: 187 RSVPELGGDLKPMVLTSTPWLRARLRGRG 215
++ G P ++ S L L RG
Sbjct: 291 DPNDQIPGSPGPWLVPSEERLSRALGVRG 319
>gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 35.0 bits (79), Expect = 0.048
Identities = 52/185 (28%), Positives = 64/185 (34%), Gaps = 22/185 (11%)
Query: 17 EGGMPKAP-EVTFARRALRACAGGAGGAGQAGGVCEA-------GADWGAQTCRATWASG 68
E G+P++ ++ F R R G QAGG+C A W A W +G
Sbjct: 191 ETGLPESRIQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHTGAWGTG 250
Query: 69 -DLDHGADA-GELRLG---RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLS 123
H A G L G Q R Q A + +PA P R D + A
Sbjct: 251 LPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGISQPA-PARGDFAYAAPAPPD 309
Query: 124 GG-SPRSGSHFPVQDAGSEATSVVARDPSQD-LPGTRRDGTLGPRPQPPAAAG--APGFD 179
G S +P S RDP +D LPG GP P G AP
Sbjct: 310 GALSHPQAPRWPPHPGKSRED----RDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTS 365
Query: 180 PASPW 184
SPW
Sbjct: 366 QGSPW 370
>gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 35.0 bits (79), Expect = 0.048
Identities = 52/185 (28%), Positives = 64/185 (34%), Gaps = 22/185 (11%)
Query: 17 EGGMPKAP-EVTFARRALRACAGGAGGAGQAGGVCEA-------GADWGAQTCRATWASG 68
E G+P++ ++ F R R G QAGG+C A W A W +G
Sbjct: 191 ETGLPESRIQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHTGAWGTG 250
Query: 69 -DLDHGADA-GELRLG---RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLS 123
H A G L G Q R Q A + +PA P R D + A
Sbjct: 251 LPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGISQPA-PARGDFAYAAPAPPD 309
Query: 124 GG-SPRSGSHFPVQDAGSEATSVVARDPSQD-LPGTRRDGTLGPRPQPPAAAG--APGFD 179
G S +P S RDP +D LPG GP P G AP
Sbjct: 310 GALSHPQAPRWPPHPGKSRED----RDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTS 365
Query: 180 PASPW 184
SPW
Sbjct: 366 QGSPW 370
>gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo
sapiens]
Length = 483
Score = 35.0 bits (79), Expect = 0.048
Identities = 52/185 (28%), Positives = 64/185 (34%), Gaps = 22/185 (11%)
Query: 17 EGGMPKAP-EVTFARRALRACAGGAGGAGQAGGVCEA-------GADWGAQTCRATWASG 68
E G+P++ ++ F R R G QAGG+C A W A W +G
Sbjct: 191 ETGLPESRIQIWFQNRRARHPGQGGRAPAQAGGLCNAAPGGGHPAPSWVAFAHTGAWGTG 250
Query: 69 -DLDHGADA-GELRLG---RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLS 123
H A G L G Q R Q A + +PA P R D + A
Sbjct: 251 LPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGISQPA-PARGDFAYAAPAPPD 309
Query: 124 GG-SPRSGSHFPVQDAGSEATSVVARDPSQD-LPGTRRDGTLGPRPQPPAAAG--APGFD 179
G S +P S RDP +D LPG GP P G AP
Sbjct: 310 GALSHPQAPRWPPHPGKSRED----RDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTS 365
Query: 180 PASPW 184
SPW
Sbjct: 366 QGSPW 370
>gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 35.0 bits (79), Expect = 0.048
Identities = 52/185 (28%), Positives = 64/185 (34%), Gaps = 22/185 (11%)
Query: 17 EGGMPKAP-EVTFARRALRACAGGAGGAGQAGGVCEA-------GADWGAQTCRATWASG 68
E G+P++ ++ F R R G QAGG+C A W A W +G
Sbjct: 191 ETGLPESRIQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHTGAWGTG 250
Query: 69 -DLDHGADA-GELRLG---RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLS 123
H A G L G Q R Q A + +PA P R D + A
Sbjct: 251 LPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGISQPA-PARGDFAYAAPAPPD 309
Query: 124 GG-SPRSGSHFPVQDAGSEATSVVARDPSQD-LPGTRRDGTLGPRPQPPAAAG--APGFD 179
G S +P S RDP +D LPG GP P G AP
Sbjct: 310 GALSHPQAPRWPPHPGKSRED----RDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTS 365
Query: 180 PASPW 184
SPW
Sbjct: 366 QGSPW 370
>gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 35.0 bits (79), Expect = 0.048
Identities = 52/185 (28%), Positives = 64/185 (34%), Gaps = 22/185 (11%)
Query: 17 EGGMPKAP-EVTFARRALRACAGGAGGAGQAGGVCEA-------GADWGAQTCRATWASG 68
E G+P++ ++ F R R G QAGG+C A W A W +G
Sbjct: 191 ETGLPESRIQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHTGAWGTG 250
Query: 69 -DLDHGADA-GELRLG---RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLS 123
H A G L G Q R Q A + +PA P R D + A
Sbjct: 251 LPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGISQPA-PARGDFAYAAPAPPD 309
Query: 124 GG-SPRSGSHFPVQDAGSEATSVVARDPSQD-LPGTRRDGTLGPRPQPPAAAG--APGFD 179
G S +P S RDP +D LPG GP P G AP
Sbjct: 310 GALSHPQAPRWPPHPGKSRED----RDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTS 365
Query: 180 PASPW 184
SPW
Sbjct: 366 QGSPW 370
>gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 35.0 bits (79), Expect = 0.048
Identities = 52/185 (28%), Positives = 64/185 (34%), Gaps = 22/185 (11%)
Query: 17 EGGMPKAP-EVTFARRALRACAGGAGGAGQAGGVCEA-------GADWGAQTCRATWASG 68
E G+P++ ++ F R R G QAGG+C A W A W +G
Sbjct: 191 ETGLPESRIQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHTGAWGTG 250
Query: 69 -DLDHGADA-GELRLG---RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLS 123
H A G L G Q R Q A + +PA P R D + A
Sbjct: 251 LPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGISQPA-PARGDFAYAAPAPPD 309
Query: 124 GG-SPRSGSHFPVQDAGSEATSVVARDPSQD-LPGTRRDGTLGPRPQPPAAAG--APGFD 179
G S +P S RDP +D LPG GP P G AP
Sbjct: 310 GALSHPQAPRWPPHPGKSRED----RDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTS 365
Query: 180 PASPW 184
SPW
Sbjct: 366 QGSPW 370
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 35.0 bits (79), Expect = 0.048
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 16/74 (21%)
Query: 126 SPRSGSHFPVQDAGS--------------EATSVVARDPSQDLPGTRRDGTLGPR-PQPP 170
SP SG HF QD T + R+ P T+ GT+ PQ P
Sbjct: 183 SPSSGGHFVFQDGSGLTQIAQGAQVQLQHPGTPITVRERRPSQPHTQSGGTIHHLGPQSP 242
Query: 171 AAAGAPGFDP-ASP 183
AAAG G P ASP
Sbjct: 243 AAAGGAGLQPLASP 256
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 34.7 bits (78), Expect = 0.063
Identities = 52/188 (27%), Positives = 62/188 (32%), Gaps = 12/188 (6%)
Query: 21 PKAPEVTFARRALRACAGGAGGAGQAGGVCEAGADWGAQTCRATWASGDLDHGADAGELR 80
P P + + G G AG+ G V G A + A G G
Sbjct: 894 PPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQG 953
Query: 81 LGRQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLSGGSPRS----GSHFPVQ 136
+ QR V GL QR P P AS G P G P
Sbjct: 954 IAGQRG---VVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPG 1010
Query: 137 DAGSEATSVVARDPSQD-LPGTRRD-GTLGPRPQP--PAAAGAPG-FDPASPWGDRSVPE 191
++G E P +D PG + D G GP P P A GAPG PA GDR
Sbjct: 1011 ESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETG 1070
Query: 192 LGGDLKPM 199
G P+
Sbjct: 1071 PAGPAGPV 1078
>gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 34.7 bits (78), Expect = 0.063
Identities = 52/185 (28%), Positives = 64/185 (34%), Gaps = 22/185 (11%)
Query: 17 EGGMPKAP-EVTFARRALRACAGGAGGAGQAGGVCEA-------GADWGAQTCRATWASG 68
E G+P++ ++ F R R G QAGG+C A W A W +G
Sbjct: 191 ETGLPESRIQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHTGAWGTG 250
Query: 69 -DLDHGADA-GELRLG---RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLS 123
H A G L G Q R Q A + +PA P R D + A
Sbjct: 251 LPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGVSQPA-PARGDFAYAAPAPPD 309
Query: 124 GG-SPRSGSHFPVQDAGSEATSVVARDPSQD-LPGTRRDGTLGPRPQPPAAAG--APGFD 179
G S +P S RDP +D LPG GP P G AP
Sbjct: 310 GALSHPQAPRWPPHPGKSRED----RDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTS 365
Query: 180 PASPW 184
SPW
Sbjct: 366 QGSPW 370
>gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 483
Score = 34.7 bits (78), Expect = 0.063
Identities = 52/185 (28%), Positives = 64/185 (34%), Gaps = 22/185 (11%)
Query: 17 EGGMPKAP-EVTFARRALRACAGGAGGAGQAGGVCEA-------GADWGAQTCRATWASG 68
E G+P++ ++ F R R G QAGG+C A W A W +G
Sbjct: 191 ETGLPESRIQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHTGAWGTG 250
Query: 69 -DLDHGADA-GELRLG---RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLS 123
H A G L G Q R Q A + +PA P R D + A
Sbjct: 251 LPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGVSQPA-PARGDFAYAAPAPPD 309
Query: 124 GG-SPRSGSHFPVQDAGSEATSVVARDPSQD-LPGTRRDGTLGPRPQPPAAAG--APGFD 179
G S +P S RDP +D LPG GP P G AP
Sbjct: 310 GALSHPQAPRWPPHPGKSRED----RDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTS 365
Query: 180 PASPW 184
SPW
Sbjct: 366 QGSPW 370
>gi|194272172 double homeobox, 4 [Homo sapiens]
Length = 485
Score = 34.7 bits (78), Expect = 0.063
Identities = 52/185 (28%), Positives = 64/185 (34%), Gaps = 22/185 (11%)
Query: 17 EGGMPKAP-EVTFARRALRACAGGAGGAGQAGGVCEA-------GADWGAQTCRATWASG 68
E G+P++ ++ F R R G QAGG+C A W A W +G
Sbjct: 191 ETGLPESRIQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHTGAWGTG 250
Query: 69 -DLDHGADA-GELRLG---RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLS 123
H A G L G Q R Q A + +PA P R D + A
Sbjct: 251 LPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGVSQPA-PARGDFAYAAPAPPD 309
Query: 124 GG-SPRSGSHFPVQDAGSEATSVVARDPSQD-LPGTRRDGTLGPRPQPPAAAG--APGFD 179
G S +P S RDP +D LPG GP P G AP
Sbjct: 310 GALSHPQAPRWPPHPGKSRED----RDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTS 365
Query: 180 PASPW 184
SPW
Sbjct: 366 QGSPW 370
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 34.7 bits (78), Expect = 0.063
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 149 DPSQDLPGTRRDGTLGPRPQPPAAAGAPGFD-PASPWGDRSVPELGGDLKPMVLTSTP 205
DP D+ P+ QPP+ AG+ P +P S GGDLKP STP
Sbjct: 1112 DPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTP 1169
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 34.7 bits (78), Expect = 0.063
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 149 DPSQDLPGTRRDGTLGPRPQPPAAAGAPGFD-PASPWGDRSVPELGGDLKPMVLTSTP 205
DP D+ P+ QPP+ AG+ P +P S GGDLKP STP
Sbjct: 1112 DPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTP 1169
>gi|194272217 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 34.7 bits (78), Expect = 0.063
Identities = 52/185 (28%), Positives = 64/185 (34%), Gaps = 22/185 (11%)
Query: 17 EGGMPKAP-EVTFARRALRACAGGAGGAGQAGGVCEA-------GADWGAQTCRATWASG 68
E G+P++ ++ F R R G QAGG+C A W A W +G
Sbjct: 191 ETGLPESRIQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAPSWVAFAHTGAWGTG 250
Query: 69 -DLDHGADA-GELRLG---RQRTRGRVRGLSVQRARCRHLQRPAVPRRPDLDHFLAASLS 123
H A G L G Q R Q A + +PA P R D + A
Sbjct: 251 LPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGVSQPA-PARGDFAYAAPAPPD 309
Query: 124 GG-SPRSGSHFPVQDAGSEATSVVARDPSQD-LPGTRRDGTLGPRPQPPAAAG--APGFD 179
G S +P S RDP +D LPG GP P G AP
Sbjct: 310 GALSHPQAPRWPPHPGKSRED----RDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTS 365
Query: 180 PASPW 184
SPW
Sbjct: 366 QGSPW 370
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,581,297
Number of Sequences: 37866
Number of extensions: 609709
Number of successful extensions: 4768
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 208
Number of HSP's that attempted gapping in prelim test: 4363
Number of HSP's gapped (non-prelim): 586
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.