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Search of human proteins with 239758137
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239758137 PREDICTED: hypothetical protein [Homo sapiens]
(89 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239758137 PREDICTED: hypothetical protein [Homo sapiens] 184 1e-47
gi|169217659 PREDICTED: similar to ectonucleotide pyrophosphatas... 136 3e-33
gi|169167316 PREDICTED: similar to ectonucleotide pyrophosphatas... 136 3e-33
gi|212549593 hypothetical protein LOC653333 [Homo sapiens] 69 1e-12
gi|134133220 hypothetical protein LOC85002 [Homo sapiens] 69 1e-12
gi|42475946 hypothetical protein LOC196483 isoform 2 [Homo sapiens] 65 1e-11
gi|42476337 hypothetical protein LOC196483 isoform 1 [Homo sapiens] 65 1e-11
gi|239754822 PREDICTED: hypothetical protein LOC653333 [Homo sap... 58 2e-09
gi|153251796 hypothetical protein LOC55199 isoform 1 [Homo sapiens] 56 5e-09
gi|153251811 hypothetical protein LOC55199 isoform 3 [Homo sapiens] 56 5e-09
gi|24211015 hypothetical protein LOC55199 isoform 2 [Homo sapiens] 56 5e-09
gi|13236579 solute carrier family 27 member 3 [Homo sapiens] 33 0.063
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 32 0.11
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 32 0.11
gi|157694497 zinc finger and BTB domain containing 10 isoform b ... 32 0.14
gi|157694499 zinc finger and BTB domain containing 10 isoform a ... 32 0.14
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|88981341 PREDICTED: similar to myosin regulatory light chain ... 30 0.31
gi|51464364 PREDICTED: similar to myosin regulatory light chain ... 30 0.31
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 30 0.41
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ... 30 0.41
gi|169167243 PREDICTED: similar to myosin regulatory light chain... 30 0.41
gi|239751284 PREDICTED: hypothetical protein XP_002347797 [Homo ... 30 0.41
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ... 30 0.41
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ... 30 0.41
gi|54607124 RNA binding motif protein 15B [Homo sapiens] 30 0.41
gi|93352554 GPR158-like 1 [Homo sapiens] 30 0.41
>gi|239758137 PREDICTED: hypothetical protein [Homo sapiens]
Length = 89
Score = 184 bits (467), Expect = 1e-47
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MGSLLGLPQTLRRSPGNGCGLAHVMAPEENAGTELLLQGFERRFLAVRTLRSFPWQVGGG 60
MGSLLGLPQTLRRSPGNGCGLAHVMAPEENAGTELLLQGFERRFLAVRTLRSFPWQVGGG
Sbjct: 1 MGSLLGLPQTLRRSPGNGCGLAHVMAPEENAGTELLLQGFERRFLAVRTLRSFPWQVGGG 60
Query: 61 ASGEARGGRGSPGADGMGLRAETPGAPAT 89
ASGEARGGRGSPGADGMGLRAETPGAPAT
Sbjct: 61 ASGEARGGRGSPGADGMGLRAETPGAPAT 89
>gi|169217659 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 136 bits (343), Expect = 3e-33
Identities = 69/88 (78%), Positives = 71/88 (80%), Gaps = 6/88 (6%)
Query: 8 PQTLRRSPG------NGCGLAHVMAPEENAGTELLLQGFERRFLAVRTLRSFPWQVGGGA 61
P L+ PG CG AHVMAPEENAGTEL LQGFERRFLA R+LRSFPWQV GGA
Sbjct: 393 PPPLQSRPGFLQVSRQRCGSAHVMAPEENAGTELWLQGFERRFLAARSLRSFPWQVAGGA 452
Query: 62 SGEARGGRGSPGADGMGLRAETPGAPAT 89
SGEARGGRGSPGADGMGL AETPGAPAT
Sbjct: 453 SGEARGGRGSPGADGMGLGAETPGAPAT 480
>gi|169167316 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 136 bits (343), Expect = 3e-33
Identities = 69/88 (78%), Positives = 71/88 (80%), Gaps = 6/88 (6%)
Query: 8 PQTLRRSPG------NGCGLAHVMAPEENAGTELLLQGFERRFLAVRTLRSFPWQVGGGA 61
P L+ PG CG AHVMAPEENAGTEL LQGFERRFLA R+LRSFPWQV GGA
Sbjct: 393 PPPLQSRPGFLQVSRQRCGSAHVMAPEENAGTELWLQGFERRFLAARSLRSFPWQVAGGA 452
Query: 62 SGEARGGRGSPGADGMGLRAETPGAPAT 89
SGEARGGRGSPGADGMGL AETPGAPAT
Sbjct: 453 SGEARGGRGSPGADGMGLGAETPGAPAT 480
>gi|212549593 hypothetical protein LOC653333 [Homo sapiens]
Length = 330
Score = 68.6 bits (166), Expect = 1e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 25 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ 56
MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ
Sbjct: 1 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ 32
>gi|134133220 hypothetical protein LOC85002 [Homo sapiens]
Length = 296
Score = 68.6 bits (166), Expect = 1e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 25 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ 56
MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ
Sbjct: 1 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ 32
>gi|42475946 hypothetical protein LOC196483 isoform 2 [Homo
sapiens]
Length = 296
Score = 64.7 bits (156), Expect = 1e-11
Identities = 30/32 (93%), Positives = 30/32 (93%)
Query: 25 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ 56
MAPEENAGTELLLQ FERRFLA RTLRSFPWQ
Sbjct: 1 MAPEENAGTELLLQSFERRFLAARTLRSFPWQ 32
>gi|42476337 hypothetical protein LOC196483 isoform 1 [Homo
sapiens]
Length = 330
Score = 64.7 bits (156), Expect = 1e-11
Identities = 30/32 (93%), Positives = 30/32 (93%)
Query: 25 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ 56
MAPEENAGTELLLQ FERRFLA RTLRSFPWQ
Sbjct: 1 MAPEENAGTELLLQSFERRFLAARTLRSFPWQ 32
>gi|239754822 PREDICTED: hypothetical protein LOC653333 [Homo
sapiens]
Length = 329
Score = 57.8 bits (138), Expect = 2e-09
Identities = 26/32 (81%), Positives = 27/32 (84%)
Query: 25 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ 56
M PEENAGT+LLLQ FE RFL RTLRSFPWQ
Sbjct: 1 MTPEENAGTKLLLQSFESRFLVARTLRSFPWQ 32
>gi|153251796 hypothetical protein LOC55199 isoform 1 [Homo
sapiens]
Length = 165
Score = 56.2 bits (134), Expect = 5e-09
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 25 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ 56
MAPEENAG+ELLLQ F+RRFLA R LRSF WQ
Sbjct: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQ 32
>gi|153251811 hypothetical protein LOC55199 isoform 3 [Homo
sapiens]
Length = 158
Score = 56.2 bits (134), Expect = 5e-09
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 25 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ 56
MAPEENAG+ELLLQ F+RRFLA R LRSF WQ
Sbjct: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQ 32
>gi|24211015 hypothetical protein LOC55199 isoform 2 [Homo
sapiens]
Length = 131
Score = 56.2 bits (134), Expect = 5e-09
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 25 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ 56
MAPEENAG+ELLLQ F+RRFLA R LRSF WQ
Sbjct: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQ 32
>gi|13236579 solute carrier family 27 member 3 [Homo sapiens]
Length = 730
Score = 32.7 bits (73), Expect = 0.063
Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 15 PGNGCGLAHVMAP--EENAGTELLLQGFERRF-----------LAVRTLRSFPWQVG--G 59
P GC LA +A ++ A L+ G RRF A LR+ W G G
Sbjct: 108 PEGGCSLAWRLAELAQQRAAHTFLIHG-SRRFSYSEAERESNRAARAFLRALGWDWGPDG 166
Query: 60 GASGEARGGRGSPGADGMGLRAETPGA 86
G SGE G G A G G A GA
Sbjct: 167 GDSGEGSAGEGERAAPGAGDAAAGSGA 193
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 60 GASGEARGGRGSPGADGMGLRAE--TPGAP 87
G GE RG +G PGA G+GLR E PG P
Sbjct: 983 GPKGE-RGAKGDPGAPGVGLRGEMGPPGIP 1011
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 60 GASGEARGGRGSPGADGMGLRAE--TPGAP 87
G GE RG +G PGA G+GLR E PG P
Sbjct: 1536 GPKGE-RGAKGDPGAPGVGLRGEMGPPGIP 1564
>gi|157694497 zinc finger and BTB domain containing 10 isoform b
[Homo sapiens]
Length = 847
Score = 31.6 bits (70), Expect = 0.14
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 8 PQTLRRSPGNGCGLAH----VMAPEENAGTELLLQGFERRFLAVRTLRSFPWQVGGGAS- 62
PQ L S G G A ++ P++ G L G LA R R+ ++ GGG
Sbjct: 74 PQDLEASAGPAAGAAEEAKELLLPQDAGGPTSLGGGAGGPLLAERNRRTLAFRGGGGGGL 133
Query: 63 GEARGGRGSPGADGMGLRAETPGAPAT 89
G RG P LR PAT
Sbjct: 134 GNNGSSRGRPETSVWPLRHFNGRGPAT 160
>gi|157694499 zinc finger and BTB domain containing 10 isoform a
[Homo sapiens]
Length = 871
Score = 31.6 bits (70), Expect = 0.14
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 8 PQTLRRSPGNGCGLAH----VMAPEENAGTELLLQGFERRFLAVRTLRSFPWQVGGGAS- 62
PQ L S G G A ++ P++ G L G LA R R+ ++ GGG
Sbjct: 74 PQDLEASAGPAAGAAEEAKELLLPQDAGGPTSLGGGAGGPLLAERNRRTLAFRGGGGGGL 133
Query: 63 GEARGGRGSPGADGMGLRAETPGAPAT 89
G RG P LR PAT
Sbjct: 134 GNNGSSRGRPETSVWPLRHFNGRGPAT 160
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 56 QVGGGASGEARGGRGSPGADGMGLRAETPGAPA 88
+ GGG +GE RGG GSPG +G A T A A
Sbjct: 435 RAGGGGTGEVRGG-GSPGRQPVGRAAVTGEAGA 466
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 56 QVGGGASGEARGGRGSPGADGMGLRAETPGAPA 88
+ GGG +GE RGG GSPG +G A T A A
Sbjct: 108 RAGGGGTGEVRGG-GSPGRQPVGRAAVTGEAGA 139
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 56 QVGGGASGEARGGRGSPGADGMGLRAETPGAPA 88
+ GGG +GE RGG GSPG +G A T A A
Sbjct: 108 RAGGGGTGEVRGG-GSPGRQPVGRAAVTGEAGA 139
>gi|239508753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 56 QVGGGASGEARGGRGSPGADGMGLRAETPGAPA 88
+ GGG +GE RGG GSPG +G A T A A
Sbjct: 108 RAGGGGTGEVRGG-GSPGRQPVGRAAVTGEAGA 139
>gi|88981341 PREDICTED: similar to myosin regulatory light chain
MRCL2 [Homo sapiens]
Length = 377
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 38 QGFERRFLAVRTLRSFPWQVGGGASGEARGGRGSPGADGMGLRAETPGA 86
+G ER L + W G G A GSPG G G ++ GA
Sbjct: 7 EGGERVLLLQGLSQGTQWHQNSGHLGSANSWEGSPGRSGAGKKSRRSGA 55
>gi|51464364 PREDICTED: similar to myosin regulatory light chain
MRCL2 [Homo sapiens]
Length = 377
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 38 QGFERRFLAVRTLRSFPWQVGGGASGEARGGRGSPGADGMGLRAETPGA 86
+G ER L + W G G A GSPG G G ++ GA
Sbjct: 7 EGGERVLLLQGLSQGTQWHQNSGHLGSANSWEGSPGRSGAGKKSRRSGA 55
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 51 RSFPWQVG-GGASGEA--RGGRGSPGADGMGLRAETPGAPAT 89
R FP + G G G A RG G+PG DG A PGAP +
Sbjct: 679 RGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGS 720
Score = 27.3 bits (59), Expect = 2.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 54 PWQVGGGASGEARGGRGSPGADGMGLRAETPG 85
P +VG G +GSPGADG TPG
Sbjct: 919 PGEVGPPGPPGPAGEKGSPGADGPAGAPGTPG 950
>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
sapiens]
Length = 307
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 54 PWQVGGGASGEARGGRGSPGADGMGLRAETPGAPA 88
PW+V GGA G GS + G GL + PA
Sbjct: 93 PWEVRGGARGPCSAPVGSRASSGPGLPSAAAARPA 127
>gi|169167243 PREDICTED: similar to myosin regulatory light chain
MRCL2 [Homo sapiens]
Length = 377
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 38 QGFERRFLAVRTLRSFPWQVGGGASGEARGGRGSPGADGMGLRAETPGA 86
+G ER L + W G G A GSPG G G ++ GA
Sbjct: 7 EGGERVLLLQGLSQGTQWHQNSGHLGSANSWEGSPGRSGAGKKSRHSGA 55
>gi|239751284 PREDICTED: hypothetical protein XP_002347797 [Homo
sapiens]
Length = 1674
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 54 PWQVGGGASGEARGGRGSPGADGMGLRAETPG 85
PW+ GGGA+ E R S G M L+ PG
Sbjct: 1439 PWEAGGGAAEEGEQERESQGQGEMFLQKAGPG 1470
>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
sapiens]
Length = 325
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 54 PWQVGGGASGEARGGRGSPGADGMGLRAETPGAPA 88
PW+V GGA G GS + G GL + PA
Sbjct: 111 PWEVRGGARGPCSAPVGSRASSGPGLPSAAAARPA 145
>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
sapiens]
Length = 325
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 54 PWQVGGGASGEARGGRGSPGADGMGLRAETPGAPA 88
PW+V GGA G GS + G GL + PA
Sbjct: 111 PWEVRGGARGPCSAPVGSRASSGPGLPSAAAARPA 145
>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
Length = 890
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 58 GGGASGEARGGR--GSPGADGMGLRA 81
G GA G RGG+ G PGA GM RA
Sbjct: 87 GSGAGGGGRGGKASGDPGASGMSPRA 112
>gi|93352554 GPR158-like 1 [Homo sapiens]
Length = 2367
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 54 PWQVGGGASGEARGGRGSPGADGMGLRAETPG 85
PW+ GGGA+ E R S G M L+ PG
Sbjct: 2132 PWEAGGGAAEEGEQERESQGQGEMFLQKAGPG 2163
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,544,679
Number of Sequences: 37866
Number of extensions: 207538
Number of successful extensions: 2189
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1857
Number of HSP's gapped (non-prelim): 389
length of query: 89
length of database: 18,247,518
effective HSP length: 61
effective length of query: 28
effective length of database: 15,937,692
effective search space: 446255376
effective search space used: 446255376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.