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Search of human proteins with 239757834
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757834 PREDICTED: hypothetical protein [Homo sapiens]
(87 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757834 PREDICTED: hypothetical protein [Homo sapiens] 190 2e-49
gi|239752345 PREDICTED: hypothetical protein XP_002348207 [Homo ... 190 2e-49
gi|239746862 PREDICTED: hypothetical protein XP_002343861 [Homo ... 190 2e-49
gi|239746858 PREDICTED: hypothetical protein XP_002343860 [Homo ... 190 2e-49
gi|239756662 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 30 0.53
gi|19424138 sperm acrosomal membrane protein 14 [Homo sapiens] 30 0.53
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] 29 0.91
gi|4503925 GATA binding protein 1 [Homo sapiens] 28 2.0
gi|239757778 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239754269 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|169168665 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|169210099 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239740898 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo ... 28 2.0
gi|239740674 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239740645 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239513940 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens] 27 2.6
gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens] 27 2.6
gi|119703753 keratin 6B [Homo sapiens] 27 2.6
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 27 2.6
gi|162287219 prune homolog 2 [Homo sapiens] 27 3.5
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 27 3.5
gi|169215453 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|239748337 PREDICTED: hypothetical protein XP_002346632 [Homo ... 27 4.5
gi|169215350 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 27 4.5
gi|14149669 mitogen-activated protein kinase kinase kinase 7 int... 27 4.5
gi|194306644 BCSC-1 isoform 1 [Homo sapiens] 27 4.5
>gi|239757834 PREDICTED: hypothetical protein [Homo sapiens]
Length = 87
Score = 190 bits (483), Expect = 2e-49
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MALALALATGTCIGAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPH 60
MALALALATGTCIGAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPH
Sbjct: 1 MALALALATGTCIGAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPH 60
Query: 61 LLPRKGTGVGVIHFGHKLRDFHLSCFL 87
LLPRKGTGVGVIHFGHKLRDFHLSCFL
Sbjct: 61 LLPRKGTGVGVIHFGHKLRDFHLSCFL 87
>gi|239752345 PREDICTED: hypothetical protein XP_002348207 [Homo
sapiens]
Length = 87
Score = 190 bits (483), Expect = 2e-49
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MALALALATGTCIGAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPH 60
MALALALATGTCIGAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPH
Sbjct: 1 MALALALATGTCIGAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPH 60
Query: 61 LLPRKGTGVGVIHFGHKLRDFHLSCFL 87
LLPRKGTGVGVIHFGHKLRDFHLSCFL
Sbjct: 61 LLPRKGTGVGVIHFGHKLRDFHLSCFL 87
>gi|239746862 PREDICTED: hypothetical protein XP_002343861 [Homo
sapiens]
Length = 87
Score = 190 bits (483), Expect = 2e-49
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MALALALATGTCIGAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPH 60
MALALALATGTCIGAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPH
Sbjct: 1 MALALALATGTCIGAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPH 60
Query: 61 LLPRKGTGVGVIHFGHKLRDFHLSCFL 87
LLPRKGTGVGVIHFGHKLRDFHLSCFL
Sbjct: 61 LLPRKGTGVGVIHFGHKLRDFHLSCFL 87
>gi|239746858 PREDICTED: hypothetical protein XP_002343860 [Homo
sapiens]
Length = 87
Score = 190 bits (483), Expect = 2e-49
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MALALALATGTCIGAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPH 60
MALALALATGTCIGAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPH
Sbjct: 1 MALALALATGTCIGAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPH 60
Query: 61 LLPRKGTGVGVIHFGHKLRDFHLSCFL 87
LLPRKGTGVGVIHFGHKLRDFHLSCFL
Sbjct: 61 LLPRKGTGVGVIHFGHKLRDFHLSCFL 87
>gi|239756662 PREDICTED: hypothetical protein [Homo sapiens]
Length = 418
Score = 30.4 bits (67), Expect = 0.31
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 27 PGTGTGTNTGTC-HVTNGSCHLGHGVSPP 54
P TGTGT C H+++GS H G +PP
Sbjct: 124 PWTGTGTEGXECWHLSSGSVHPSPGPAPP 152
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 29.6 bits (65), Expect = 0.53
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 24 GIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPHLLPR 64
G GPG G G G H GHG PP + +P +PR
Sbjct: 344 GPGPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLP--IPR 382
>gi|19424138 sperm acrosomal membrane protein 14 [Homo sapiens]
Length = 124
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 10 GTCIGAGADA-CFS-HGIGPGTGTGTNTGTCHVTNGSCHLGHGVS 52
GT + G D CF+ HG+ PGTG N G T SC L VS
Sbjct: 36 GTYMHCGDDEDCFTGHGVAPGTGPVINKGCLRAT--SCGLEEPVS 78
>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
Length = 1541
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 9 TGTCIGAGADA-------CFSHGIGPG---TGTGTNTGTCHVTNGSCHLGHG 50
TGTC+ A C + G G T + N G CH +NGSC G G
Sbjct: 1274 TGTCLCPPGRAGVRCERGCPQNRFGVGCEHTCSCRNGGLCHASNGSCSCGLG 1325
>gi|4503925 GATA binding protein 1 [Homo sapiens]
Length = 413
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 9 TGTCIG-AGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMP--HLLPRK 65
TG G AG + G G G +G G+ HL G+ P +LS P HL+P
Sbjct: 324 TGAAEGPAGGFMVVAGGSGSGNCGEVASGLTLGPPGTAHLYQGLGPVVLSGPVSHLMPFP 383
Query: 66 GTGVG 70
G +G
Sbjct: 384 GPLLG 388
>gi|239757778 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 13 IGAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMP 59
+ A A F G G GT T T+TGT T S G G S + P
Sbjct: 1 MSTNASASFPGGTGTGTSTRTSTGTGTSTRTS--TGTGTSTRTIPAP 45
>gi|239754269 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 25 IGPGTGTGTNTGTCHVTNGSCHLGHGVSPPL-LSMPHLLPR-KGTGVGVIHFGH 76
+G G+GT + G V G +GHG + + H L G G GV H GH
Sbjct: 1471 LGLGSGTFHSLGNALVHGGELEMGHGGTHGFGYGVGHGLSHIHGDGYGVNHGGH 1524
>gi|169168665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 25 IGPGTGTGTNTGTCHVTNGSCHLGHGVSPPL-LSMPHLLPR-KGTGVGVIHFGH 76
+G G+GT + G V G +GHG + + H L G G GV H GH
Sbjct: 1461 LGLGSGTFHSLGNALVHGGELEMGHGGTHGFGYGVGHGLSHIHGDGYGVNHGGH 1514
>gi|169210099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 413
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 27 PGTGTGTNTGTC-HVTNGSCHLGHGVSPP 54
P TGT T C H+++GS H G +PP
Sbjct: 119 PRTGTATEGQECWHLSSGSVHPSPGPAPP 147
>gi|239740898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1542
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 25 IGPGTGTGTNTGTCHVTNGSCHLGHGVSPPL-LSMPHLLPR-KGTGVGVIHFGH 76
+G G+GT + G V G +GHG + + H L G G GV H GH
Sbjct: 1482 LGLGSGTFHSLGNALVHGGELEMGHGGTHGFGYGVGHGLSHIHGDGYGVNHGGH 1535
>gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo
sapiens]
Length = 1521
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 25 IGPGTGTGTNTGTCHVTNGSCHLGHGVSPPL-LSMPHLLPR-KGTGVGVIHFGH 76
+G G+GT + G V G +GHG + + H L G G GV H GH
Sbjct: 1461 LGLGSGTFHSLGNALVHGGELEMGHGGTHGFGYGVGHGLSHIHGDGYGVNHGGH 1514
>gi|239740674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 25 IGPGTGTGTNTGTCHVTNGSCHLGHGVSPPL-LSMPHLLPR-KGTGVGVIHFGH 76
+G G+GT + G V G +GHG + + H L G G GV H GH
Sbjct: 1471 LGLGSGTFHSLGNALVHGGELEMGHGGTHGFGYGVGHGLSHIHGDGYGVNHGGH 1524
>gi|239740645 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 25 IGPGTGTGTNTGTCHVTNGSCHLGHGVSPPL-LSMPHLLPR-KGTGVGVIHFGH 76
+G G+GT + G V G +GHG + + H L G G GV H GH
Sbjct: 1471 LGLGSGTFHSLGNALVHGGELEMGHGGTHGFGYGVGHGLSHIHGDGYGVNHGGH 1524
>gi|239513940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 25 IGPGTGTGTNTGTCHVTNGSCHLGHGVSPPL-LSMPHLLPR-KGTGVGVIHFGH 76
+G G+GT + G V G +GHG + + H L G G GV H GH
Sbjct: 1461 LGLGSGTFHSLGNALVHGGELEMGHGGTHGFGYGVGHGLSHIHGDGYGVNHGGH 1514
>gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens]
Length = 531
Score = 27.3 bits (59), Expect = 2.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 14 GAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPHLLPRKG 66
G G+ C S G+ PG GT + GT + C +P L+ L R+G
Sbjct: 62 GGGSRGC-SLGVSPGPGTRHSAGTRPLVREPCGPTSSQNPELVIPEGLQAREG 113
>gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens]
Length = 531
Score = 27.3 bits (59), Expect = 2.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 14 GAGADACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMPHLLPRKG 66
G G+ C S G+ PG GT + GT + C +P L+ L R+G
Sbjct: 62 GGGSRGC-SLGVSPGPGTRHSAGTRPLVREPCGPTSSQNPELVIPEGLQAREG 113
>gi|119703753 keratin 6B [Homo sapiens]
Length = 564
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 6 ALATGTCIGAGADACFSHGIGPGTGTGTNTGTCHVTNG 43
A G+ +G G + +S+G G G G G ++ + T G
Sbjct: 500 ASGVGSGLGLGGGSSYSYGSGLGVGGGFSSSSGRATGG 537
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 27.3 bits (59), Expect = 2.6
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 24 GIGPGTGTGTNTGTCHV---TNGSCHLGHGVSPPLLSMPHLLPRKGTGVGVIHFG 75
G G G G G G+ H + HL H + ++MP LP G H G
Sbjct: 173 GGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHG 227
>gi|162287219 prune homolog 2 [Homo sapiens]
Length = 3088
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 7 LATGTCIGAGADACFSHGIGPGTGTGTNTGT 37
LA+ TC+ ++A F H +G T+TGT
Sbjct: 2286 LASDTCLDI-SEAAFDHSFSDASGLNTSTGT 2315
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 14 GAGADACFSHGIGPGTGTGTNTG 36
GAGA+A G G G G GT +G
Sbjct: 1918 GAGAEAGAEAGAGAGAGPGTESG 1940
>gi|169215453 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 14 GAGADACFSHGIGPGTGTGTNTGTC 38
G+G HG PG G+G++ G C
Sbjct: 376 GSGGQGRPGHGSEPGAGSGSSQGLC 400
>gi|239748337 PREDICTED: hypothetical protein XP_002346632 [Homo
sapiens]
Length = 189
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 13 IGAGADACFSHGIGPGTGTG 32
+GAG D + G GPG GTG
Sbjct: 146 LGAGRDKHTTDGAGPGEGTG 165
>gi|169215350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 14 GAGADACFSHGIGPGTGTGTNTGTC 38
G+G HG PG G+G++ G C
Sbjct: 376 GSGGQGRPGHGSEPGAGSGSSQGLC 400
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 26.6 bits (57), Expect = 4.5
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 15/74 (20%)
Query: 2 ALALALATGTCIGAGAD------ACFSHGIGPGTGTGTNTGTCHVTNGSCHLGHGVSPPL 55
A + T + AGAD A S GPGT TGT T T T L
Sbjct: 115 AAVAGVETSRALAAGADSPKTEEARPSPAPGPGTPTGTPTRTPSRT---------APGAL 165
Query: 56 LSMPHLLPRKGTGV 69
+ P L P+ GT V
Sbjct: 166 TAKPPLAPKPGTTV 179
>gi|14149669 mitogen-activated protein kinase kinase kinase 7
interacting protein 2 [Homo sapiens]
Length = 693
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
Query: 25 IGPGTGTGTNTGTCHVTNGSCHLGHGVSPPLLSMP 59
+ P TG NT T S H+ HGV PP+L+ P
Sbjct: 181 LAPNIQTGRNTPT------SLHI-HGVPPPVLNSP 208
>gi|194306644 BCSC-1 isoform 1 [Homo sapiens]
Length = 786
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 20 CFSHGIGPGTGTGTNTGTCHVTNGS 44
CFS GIG GT T G + G+
Sbjct: 416 CFSFGIGEGTSTSLIKGIARASGGT 440
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.142 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,306,369
Number of Sequences: 37866
Number of extensions: 216699
Number of successful extensions: 825
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 114
length of query: 87
length of database: 18,247,518
effective HSP length: 59
effective length of query: 28
effective length of database: 16,013,424
effective search space: 448375872
effective search space used: 448375872
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.