Guide to the Human Genome
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Name: VWA5A Sequence: fasta or formatted (786aa) NCBI GI: 194306644
Description:

BCSC-1 isoform 1

Referenced in:

polyADP-Ribose Polymerase Family

Other entries for this name:
alt mRNA [786aa] BCSC-1 isoform 1
alt prot [415aa] BCSC-1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         59           2
 C cysteine            1.7         13           1
 D aspartate           4.7         37           2
 E glutamate           6.2         49           2
 F phenylalanine       4.3         34           2
 G glycine             6.6         52           2
 H histidine           2.4         19           1
 I isoleucine          5.0         39           1
 K lysine              6.1         48           2
 L leucine            10.7         84           3
 M methionine          3.1         24           1
 N asparagine          3.2         25           1
 P proline             6.1         48           2
 Q glutamine           4.6         36           2
 R arginine            3.7         29           1
 S serine              9.3         73           3
 T threonine           5.0         39           2
 V valine              6.5         51           2
 W tryptophan          0.8          6           1
 Y tyrosine            2.7         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   BCSC-1 isoform 1 
VWA5A                 1.000   BCSC-1 isoform 1 
VWA5A                 0.522   BCSC-1 isoform 2 
VWA5B1                0.130   von Willebrand factor A domain containing 5B1 [Homo...
PARP4                 0.088   poly (ADP-ribose) polymerase family, member 4 [Homo...
VWA5B2                0.076   von Willebrand factor A domain containing 5B2 [Homo...
ITIH1                 0.027   inter-alpha (globulin) inhibitor H1 
ITIH4                 0.027   inter-alpha (globulin) inhibitor H4 
ITIH5L                0.020   inter-alpha (globulin) inhibitor H5-like 
ITIH3                 0.016   inter-alpha (globulin) inhibitor H3 preproprotein [...
VWA3A                 0.011   von Willebrand factor A domain containing 3A 
NAV1                  0.006   neuron navigator 1 
TOP2A                 0.005   DNA topoisomerase II, alpha isozyme 
CACNA2D3              0.005   calcium channel, voltage-dependent, alpha 2/delta 3 ...
EGR3                  0.004   early growth response 3 
RRAGB                 0.004   Ras-related GTP binding B short isoform 
ABCB1                 0.003   ATP-binding cassette, subfamily B, member 1 
LOC730429             0.003   PREDICTED: similar to ubiquitin protein ligase E3 c...
LOC730429             0.003   PREDICTED: similar to ubiquitin protein ligase E3 c...
NPL                   0.003   N-acetylneuraminate pyruvate lyase 
ALPK2                 0.003   heart alpha-kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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