Guide to the Human Genome
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Name: LOC100288197 Sequence: fasta or formatted (87aa) NCBI GI: 239746862
Description:

PREDICTED: hypothetical protein XP_002343861

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0          7           1
 C cysteine            5.7          5           1
 D aspartate           2.3          2           1
 E glutamate           0.0          0           0
 F phenylalanine       4.6          4           1
 G glycine            18.4         16           1
 H histidine           9.2          8           1
 I isoleucine          3.4          3           1
 K lysine              2.3          2           1
 L leucine            12.6         11           2
 M methionine          2.3          2           1
 N asparagine          2.3          2           1
 P proline             5.7          5           2
 Q glutamine           0.0          0           0
 R arginine            2.3          2           1
 S serine              5.7          5           1
 T threonine          10.3          9           1
 V valine              4.6          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343861 
LOC100292814          1.000   PREDICTED: hypothetical protein 
LOC100290535          1.000   PREDICTED: hypothetical protein XP_002348207 
LOC100288168          1.000   PREDICTED: hypothetical protein XP_002343860 
LOC100129697          0.030   PREDICTED: hypothetical protein 
RBM27                 0.030   RNA binding motif protein 27 
SPACA4                0.030   sperm acrosomal membrane protein 14 
MEGF6                 0.024   EGF-like-domain, multiple 3 
GATA1                 0.018   GATA binding protein 1 
LOC100134320          0.018   PREDICTED: hypothetical protein 
LOC729792             0.018   PREDICTED: hypothetical protein 
LOC729792             0.018   PREDICTED: hypothetical protein 
LOC100129697          0.018   PREDICTED: hypothetical protein 
LOC100294501          0.018   PREDICTED: hypothetical protein 
LOC100294249          0.018   PREDICTED: hypothetical protein XP_002344067 
LOC100294136          0.018   PREDICTED: hypothetical protein 
LOC100294091          0.018   PREDICTED: hypothetical protein 
LOC730401             0.018   PREDICTED: hypothetical protein 
ZNF837                0.012   zinc finger protein 837 isoform 1 
ZNF837                0.012   zinc finger protein 837 isoform 2 
KRT6B                 0.012   keratin 6B 
POU4F1                0.012   POU domain, class 4, transcription factor 1 
PRUNE2                0.012   prune homolog 2 
LOC100292655          0.012   PREDICTED: similar to armadillo repeat containing, ...
LOC100129890          0.012   PREDICTED: hypothetical protein 
LOC100290430          0.012   PREDICTED: hypothetical protein XP_002346632 
LOC100129890          0.012   PREDICTED: hypothetical protein 
TBC1D10B              0.012   TBC1 domain family, member 10B 
MAP3K7IP2             0.012   mitogen-activated protein kinase kinase kinase 7 int...
VWA5A                 0.012   BCSC-1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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