Guide to the Human Genome
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Search of human proteins with 239757476

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239757476 PREDICTED: hypothetical protein [Homo sapiens]
         (104 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757476 PREDICTED: hypothetical protein [Homo sapiens]           214   9e-57
gi|239751982 PREDICTED: hypothetical protein XP_002348093 [Homo ...   214   9e-57
gi|239746469 PREDICTED: hypothetical protein XP_002343770 [Homo ...   214   9e-57
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s...    30   0.31 
gi|55770852 glutamate receptor, ionotropic, delta 1 precursor [H...    28   1.2  
gi|41352718 deltex homolog 1 [Homo sapiens]                            28   1.2  
gi|239757751 PREDICTED: hypothetical protein [Homo sapiens]            28   1.5  
gi|239756041 PREDICTED: hypothetical protein XP_002344790 [Homo ...    28   2.0  
gi|239752261 PREDICTED: hypothetical protein XP_002348184 [Homo ...    28   2.0  
gi|239746774 PREDICTED: hypothetical protein XP_002343845 [Homo ...    28   2.0  
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]            27   3.4  
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ...    27   3.4  
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ...    27   3.4  
gi|145309320 forkhead box Q1 [Homo sapiens]                            26   5.9  
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i...    26   5.9  
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i...    26   5.9  
gi|20162568 melanoma antigen family C, 3 isoform 1 [Homo sapiens]      26   5.9  
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa...    26   5.9  
gi|41152072 zinc finger, DHHC domain containing 5 [Homo sapiens]       26   5.9  
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ...    26   7.7  
gi|61744471 low density lipoprotein receptor-related protein 8 i...    26   7.7  
gi|61744467 low density lipoprotein receptor-related protein 8 i...    26   7.7  
gi|66082554 low density lipoprotein receptor-related protein 8 i...    26   7.7  
gi|65301119 low density lipoprotein receptor-related protein 8 i...    26   7.7  
gi|34098976 marapsin 2 [Homo sapiens]                                  26   7.7  

>gi|239757476 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 104

 Score =  214 bits (546), Expect = 9e-57
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60
           MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE
Sbjct: 1   MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60

Query: 61  ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104
           ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA
Sbjct: 61  ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104


>gi|239751982 PREDICTED: hypothetical protein XP_002348093 [Homo
           sapiens]
          Length = 104

 Score =  214 bits (546), Expect = 9e-57
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60
           MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE
Sbjct: 1   MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60

Query: 61  ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104
           ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA
Sbjct: 61  ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104


>gi|239746469 PREDICTED: hypothetical protein XP_002343770 [Homo
           sapiens]
          Length = 104

 Score =  214 bits (546), Expect = 9e-57
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60
           MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE
Sbjct: 1   MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60

Query: 61  ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104
           ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA
Sbjct: 61  ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104


>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
           sapiens]
          Length = 1183

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 66  GKWNRAAAALGPSSPGQRLWVQPRGERPCTPTL 98
           G   +  + LGP+   + LW QP  + PC P L
Sbjct: 266 GTRTKKESTLGPAGDTELLWSQPHSDVPCQPPL 298


>gi|55770852 glutamate receptor, ionotropic, delta 1 precursor [Homo
           sapiens]
          Length = 1009

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 18  AVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVEARSRYGKW 68
           AV    +AQ  P+A+ A L  A +++ G +++Q G+S  N +  R   G W
Sbjct: 588 AVRAQSAAQPRPSAS-ATLHSAIWIVYGAFVQQGGESSVNSMAMRIVMGSW 637


>gi|41352718 deltex homolog 1 [Homo sapiens]
          Length = 620

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 30/99 (30%)

Query: 4   LCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVEARS 63
           + + ++R   PAP   LP      GP  A+AV P ATF     W                
Sbjct: 218 ILASQRRKAPPAP--PLPPPPPPGGPPGALAVRPSATFTGAALW---------------- 259

Query: 64  RYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGA 102
                  AA A GP+ P       P G  P +P   GGA
Sbjct: 260 -------AAPAAGPAEP-----APPPGAPPRSPGAPGGA 286


>gi|239757751 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 327

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 26/78 (33%)

Query: 51  NGQSEKNEVEARSRYGK-------------WNRAAA-----------ALGPSSPGQRLWV 86
           N +  K E+ AR R+               W RA A           ALGP + G +L V
Sbjct: 66  NTRCLKFEISARGRWAVFHHQPSTPKGRCVWRRAGAGIVRSGPGLHGALGPDTGGAKLRV 125

Query: 87  QPRGERPCTPTL--FGGA 102
           +PR   P  P+L   GGA
Sbjct: 126 RPRRTPPRDPSLPVLGGA 143


>gi|239756041 PREDICTED: hypothetical protein XP_002344790 [Homo
          sapiens]
          Length = 172

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 11/77 (14%)

Query: 14 PAPLAVLPAFSAQ-LGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVEARSRYGKWNRAA 72
          P+PL+VLP   AQ + P   VAV+       LG   ++ G +     EA  R G+W R  
Sbjct: 19 PSPLSVLPGVVAQPVRPLGVVAVM----VRELGPLRREGGPAVH---EALHRGGRW-RLL 70

Query: 73 AALGPSSPGQRLWVQPR 89
           A GP    Q+L+ Q R
Sbjct: 71 CARGPVL--QQLYPQHR 85


>gi|239752261 PREDICTED: hypothetical protein XP_002348184 [Homo
           sapiens]
          Length = 264

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 13/48 (27%)

Query: 68  WNRAAA-----------ALGPSSPGQRLWVQPRGERPCTPTL--FGGA 102
           W RA A           ALGP + G +L V+PR   P  P+L   GGA
Sbjct: 33  WRRAGAGIVRSGPGLHGALGPDTGGAKLRVRPRRTPPRDPSLPVLGGA 80


>gi|239746774 PREDICTED: hypothetical protein XP_002343845 [Homo
           sapiens]
          Length = 264

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 13/48 (27%)

Query: 68  WNRAAA-----------ALGPSSPGQRLWVQPRGERPCTPTL--FGGA 102
           W RA A           ALGP + G +L V+PR   P  P+L   GGA
Sbjct: 33  WRRAGAGIVRSGPGLHGALGPDTGGAKLRVRPRRTPPRDPSLPVLGGA 80


>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 370

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 62  RSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAP 103
           R R G    AA   G   P +R   QP G R   P   GGAP
Sbjct: 80  RGRGGLPGAAALGAGAQQPRRRRLAQPPGSR--APLQVGGAP 119


>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
           sapiens]
          Length = 470

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 62  RSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAP 103
           R R G    AA   G   P +R   QP G R   P   GGAP
Sbjct: 80  RGRGGLPGAAALGAGAQQPRRRRLAQPPGSR--APLQVGGAP 119


>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
           sapiens]
          Length = 470

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 62  RSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAP 103
           R R G    AA   G   P +R   QP G R   P   GGAP
Sbjct: 80  RGRGGLPGAAALGAGAQQPRRRRLAQPPGSR--APLQVGGAP 119


>gi|145309320 forkhead box Q1 [Homo sapiens]
          Length = 403

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 8/44 (18%)

Query: 6   SDRQRTTSP--------APLAVLPAFSAQLGPAAAVAVLPLATF 41
           S R R T+P        AP   LPAF A L  A   A+LPL  +
Sbjct: 283 SRRLRDTAPGTTLQWGAAPCPPLPAFPALLPAAPCRALLPLCAY 326


>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
           isoform 1 [Homo sapiens]
          Length = 793

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)

Query: 49  KQNGQSEKNEVEA------RSRYGKWNRAAAALGPSSPG 81
           K+N + E+ E +       R+  GKW R +A  GPS  G
Sbjct: 622 KENSKREEEEQQEGGFASPRTGKGKWKRKSAGGGPSRAG 660


>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
           isoform 2 [Homo sapiens]
          Length = 806

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)

Query: 49  KQNGQSEKNEVEA------RSRYGKWNRAAAALGPSSPG 81
           K+N + E+ E +       R+  GKW R +A  GPS  G
Sbjct: 635 KENSKREEEEQQEGGFASPRTGKGKWKRKSAGGGPSRAG 673


>gi|20162568 melanoma antigen family C, 3 isoform 1 [Homo sapiens]
          Length = 643

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 54  SEKNEVEARSRYGKWNRAAA---ALGPSSPGQRLWVQPRGERPCTPTLF 99
           +EK  +   S    W R      +L   SPG+RLW +  G  P +  LF
Sbjct: 132 NEKRTLWKDSDLPTWRRGTGYTLSLPAVSPGKRLWGEKAGSLPESEPLF 180


>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
            sapiens]
          Length = 2113

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 32/106 (30%)

Query: 28   GPAAAVAVLPLATFMILGDWL---KQNGQSEKNEVEARS--------------------- 63
            GP A +  +P +   ++  WL   K NG   K  +   S                     
Sbjct: 1252 GPPAGIKAVPSSASSVVVSWLPPTKPNGVIRKYTIFCSSPGSGQPAPSEYETSPEQLFYR 1311

Query: 64   --------RYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGG 101
                    +Y  W  A  + G  +  +++ ++P G+ P     FGG
Sbjct: 1312 IAHLNRGQQYLLWVAAVTSAGRGNSSEKVTIEPAGKAPAKIISFGG 1357


>gi|41152072 zinc finger, DHHC domain containing 5 [Homo sapiens]
          Length = 715

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 56  KNEVEARSRYGKWNRAAAALGPSSPG 81
           K+EV+ ++ Y K N    +LG +SPG
Sbjct: 661 KDEVQLKTTYSKSNGQPKSLGSASPG 686


>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
           subunit [Homo sapiens]
          Length = 551

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 5/33 (15%)

Query: 76  GPSSPGQRL-----WVQPRGERPCTPTLFGGAP 103
           GP  PGQ L         RG+RP  P LF G P
Sbjct: 251 GPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQP 283


>gi|61744471 low density lipoprotein receptor-related protein 8
           isoform 1 precursor [Homo sapiens]
          Length = 963

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%)

Query: 1   MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDW 47
           +AT+   R+RT           FS  L    A+AV PL  FM   DW
Sbjct: 523 VATVDGGRRRTL----------FSRNLSEPRAIAVDPLRGFMYWSDW 559


>gi|61744467 low density lipoprotein receptor-related protein 8
           isoform 3 precursor [Homo sapiens]
          Length = 700

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%)

Query: 1   MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDW 47
           +AT+   R+RT           FS  L    A+AV PL  FM   DW
Sbjct: 394 VATVDGGRRRTL----------FSRNLSEPRAIAVDPLRGFMYWSDW 430


>gi|66082554 low density lipoprotein receptor-related protein 8
           isoform 2 precursor [Homo sapiens]
          Length = 793

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%)

Query: 1   MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDW 47
           +AT+   R+RT           FS  L    A+AV PL  FM   DW
Sbjct: 353 VATVDGGRRRTL----------FSRNLSEPRAIAVDPLRGFMYWSDW 389


>gi|65301119 low density lipoprotein receptor-related protein 8
           isoform 4 precursor [Homo sapiens]
          Length = 904

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%)

Query: 1   MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDW 47
           +AT+   R+RT           FS  L    A+AV PL  FM   DW
Sbjct: 523 VATVDGGRRRTL----------FSRNLSEPRAIAVDPLRGFMYWSDW 559


>gi|34098976 marapsin 2 [Homo sapiens]
          Length = 326

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 4   LCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMIL 44
           +C + + T +PA  A  PA S  LGP  +V +  LA + +L
Sbjct: 288 ICDNIEITPTPAQPA--PALSPALGPTLSVLMAMLAGWSVL 326


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.130    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,790,862
Number of Sequences: 37866
Number of extensions: 202323
Number of successful extensions: 679
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 25
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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