Guide to the Human Genome
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Search of human proteins with 239756947

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756947 PREDICTED: similar to hCG1647636 [Homo sapiens]
         (73 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756947 PREDICTED: similar to hCG1647636 [Homo sapiens]          165   6e-42
gi|239751438 PREDICTED: similar to hCG1647636 [Homo sapiens]          165   6e-42
gi|239745943 PREDICTED: similar to hCG1647636 [Homo sapiens]          165   6e-42
gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo s...   107   2e-24
gi|9994187 platelet-derived growth factor C precursor [Homo sapi...    29   0.69 
gi|17978466 cyclin T1 [Homo sapiens]                                   28   1.5  
gi|17978469 cyclin T2 isoform b [Homo sapiens]                         27   2.6  
gi|4502629 cyclin T2 isoform a [Homo sapiens]                          27   2.6  
gi|42475941 zinc finger protein 261 [Homo sapiens]                     27   3.4  
gi|4827067 zinc finger protein 261 [Homo sapiens]                      27   3.4  
gi|169171432 PREDICTED: similar to hCG2014367 [Homo sapiens]           27   4.5  
gi|239753062 PREDICTED: hypothetical protein [Homo sapiens]            27   4.5  
gi|169171899 PREDICTED: similar to hCG2014367 [Homo sapiens]           27   4.5  
gi|169171130 PREDICTED: hypothetical protein LOC100130600 [Homo ...    27   4.5  
gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo ...    27   4.5  
gi|239509024 PREDICTED: similar to hCG2014367 [Homo sapiens]           27   4.5  
gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo sap...    26   5.9  
gi|169172340 PREDICTED: hypothetical protein LOC442676 [Homo sap...    26   5.9  
gi|169170016 PREDICTED: hypothetical protein LOC442676 [Homo sap...    26   5.9  
gi|239508816 PREDICTED: hypothetical protein LOC442676 [Homo sap...    26   5.9  
gi|108773804 Fraser syndrome 1 [Homo sapiens]                          26   5.9  
gi|169790973 parkin isoform 3 [Homo sapiens]                           26   7.7  
gi|169790971 parkin isoform 2 [Homo sapiens]                           26   7.7  
gi|169790969 parkin isoform 1 [Homo sapiens]                           26   7.7  
gi|126012573 low density lipoprotein-related protein 2 [Homo sap...    26   7.7  

>gi|239756947 PREDICTED: similar to hCG1647636 [Homo sapiens]
          Length = 73

 Score =  165 bits (418), Expect = 6e-42
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 1  MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60
          MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA
Sbjct: 1  MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60

Query: 61 WEDVDSTAEPCPQ 73
          WEDVDSTAEPCPQ
Sbjct: 61 WEDVDSTAEPCPQ 73


>gi|239751438 PREDICTED: similar to hCG1647636 [Homo sapiens]
          Length = 73

 Score =  165 bits (418), Expect = 6e-42
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 1  MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60
          MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA
Sbjct: 1  MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60

Query: 61 WEDVDSTAEPCPQ 73
          WEDVDSTAEPCPQ
Sbjct: 61 WEDVDSTAEPCPQ 73


>gi|239745943 PREDICTED: similar to hCG1647636 [Homo sapiens]
          Length = 73

 Score =  165 bits (418), Expect = 6e-42
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 1  MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60
          MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA
Sbjct: 1  MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60

Query: 61 WEDVDSTAEPCPQ 73
          WEDVDSTAEPCPQ
Sbjct: 61 WEDVDSTAEPCPQ 73


>gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo
          sapiens]
          Length = 108

 Score =  107 bits (267), Expect = 2e-24
 Identities = 55/73 (75%), Positives = 58/73 (79%), Gaps = 3/73 (4%)

Query: 2  MLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVH-FTHKVTNWKYSKLKEVDDGLGGAAA 60
          MLLF PGC +GLIVEEGQRC  H  ACNTC  VH  T KVTN KY KLKEVDD LGGAAA
Sbjct: 1  MLLFCPGCGNGLIVEEGQRC--HRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58

Query: 61 WEDVDSTAEPCPQ 73
          WE+VDSTAE CP+
Sbjct: 59 WENVDSTAESCPK 71


>gi|9994187 platelet-derived growth factor C precursor [Homo
           sapiens]
          Length = 345

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 4   LFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEV 51
           +F+PGC   L+   G  C C    CN C CV    KVT  KY ++ ++
Sbjct: 269 IFWPGCL--LVKRCGGNCACCLHNCNECQCV--PSKVTK-KYHEVLQL 311


>gi|17978466 cyclin T1 [Homo sapiens]
          Length = 726

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 6/37 (16%)

Query: 31  CLCVHFTHKVTNWKYSKLKEVDDGLGGAAAWEDVDST 67
           C+C+H   K +NW      E+     G   WE VD+T
Sbjct: 198 CVCIHLACKWSNW------EIPVSTDGKHWWEYVDAT 228


>gi|17978469 cyclin T2 isoform b [Homo sapiens]
          Length = 730

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%)

Query: 31  CLCVHFTHKVTNWKYSKLKEVDDGLGGAAAWEDVDST 67
           C+C+H   K +NW      E+     G   WE VD T
Sbjct: 197 CVCIHLACKWSNW------EIPVSTDGKHWWEYVDPT 227


>gi|4502629 cyclin T2 isoform a [Homo sapiens]
          Length = 663

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%)

Query: 31  CLCVHFTHKVTNWKYSKLKEVDDGLGGAAAWEDVDST 67
           C+C+H   K +NW      E+     G   WE VD T
Sbjct: 197 CVCIHLACKWSNW------EIPVSTDGKHWWEYVDPT 227


>gi|42475941 zinc finger protein 261 [Homo sapiens]
          Length = 1370

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 50  EVDDGLGGAAAWEDVDSTAEPCP 72
           EVD G  G  AW+  D T EP P
Sbjct: 94  EVDHGPEGTLAWDAGDQTLEPGP 116


>gi|4827067 zinc finger protein 261 [Homo sapiens]
          Length = 1370

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 50  EVDDGLGGAAAWEDVDSTAEPCP 72
           EVD G  G  AW+  D T EP P
Sbjct: 94  EVDHGPEGTLAWDAGDQTLEPGP 116


>gi|169171432 PREDICTED: similar to hCG2014367 [Homo sapiens]
          Length = 594

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 20  RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
           R   H++ C T    HF+   + W Y    E ++GLG
Sbjct: 514 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 548


>gi|239753062 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 811

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 20  RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
           R   H++ C T    HF+   + W Y    E ++GLG
Sbjct: 731 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 765


>gi|169171899 PREDICTED: similar to hCG2014367 [Homo sapiens]
          Length = 594

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 20  RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
           R   H++ C T    HF+   + W Y    E ++GLG
Sbjct: 514 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 548


>gi|169171130 PREDICTED: hypothetical protein LOC100130600 [Homo
           sapiens]
          Length = 594

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 20  RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
           R   H++ C T    HF+   + W Y    E ++GLG
Sbjct: 514 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 548


>gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo
           sapiens]
          Length = 616

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 20  RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
           R   H++ C T    HF+   + W Y    E ++GLG
Sbjct: 536 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 570


>gi|239509024 PREDICTED: similar to hCG2014367 [Homo sapiens]
          Length = 594

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 20  RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
           R   H++ C T    HF+   + W Y    E ++GLG
Sbjct: 514 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 548


>gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo
           sapiens]
          Length = 679

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 20  RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
           R   H++ C T    HF    + W Y    E ++GLG
Sbjct: 604 RAPVHTMKCGTFRAFHFLENSSCWGYK--MECEEGLG 638


>gi|169172340 PREDICTED: hypothetical protein LOC442676 [Homo
           sapiens]
          Length = 679

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 20  RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
           R   H++ C T    HF    + W Y    E ++GLG
Sbjct: 604 RAPVHTMKCGTFRAFHFLENSSCWGYK--MECEEGLG 638


>gi|169170016 PREDICTED: hypothetical protein LOC442676 [Homo
           sapiens]
          Length = 679

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 20  RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
           R   H++ C T    HF    + W Y    E ++GLG
Sbjct: 604 RAPVHTMKCGTFRAFHFLENSSCWGYK--MECEEGLG 638


>gi|239508816 PREDICTED: hypothetical protein LOC442676 [Homo
           sapiens]
          Length = 679

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 20  RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
           R   H++ C T    HF    + W Y    E ++GLG
Sbjct: 604 RAPVHTMKCGTFRAFHFLENSSCWGYK--MECEEGLG 638


>gi|108773804 Fraser syndrome 1 [Homo sapiens]
          Length = 4011

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 7   PGCRDGLIVEEGQRCRCHSLACNTC 31
           P C  G   E G   +CHS +C TC
Sbjct: 844 PDCPSGYYAERGACKKCHS-SCRTC 867


>gi|169790973 parkin isoform 3 [Homo sapiens]
          Length = 316

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 19/86 (22%)

Query: 7   PGCRDGLIVEEGQR-CRC---HSLACNTCLCVHFTHKVTNWKYSKLKE----------VD 52
           PGC  GL+ E  QR   C   + L C    C          + S + E          VD
Sbjct: 186 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVD 245

Query: 53  DGLGGAAAW-----EDVDSTAEPCPQ 73
           +     A W     E +  T +PCP+
Sbjct: 246 ERAAEQARWEAASKETIKKTTKPCPR 271


>gi|169790971 parkin isoform 2 [Homo sapiens]
          Length = 437

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 19/86 (22%)

Query: 7   PGCRDGLIVEEGQR-CRC---HSLACNTCLCVHFTHKVTNWKYSKLKE----------VD 52
           PGC  GL+ E  QR   C   + L C    C          + S + E          VD
Sbjct: 307 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVD 366

Query: 53  DGLGGAAAW-----EDVDSTAEPCPQ 73
           +     A W     E +  T +PCP+
Sbjct: 367 ERAAEQARWEAASKETIKKTTKPCPR 392


>gi|169790969 parkin isoform 1 [Homo sapiens]
          Length = 465

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 19/86 (22%)

Query: 7   PGCRDGLIVEEGQR-CRC---HSLACNTCLCVHFTHKVTNWKYSKLKE----------VD 52
           PGC  GL+ E  QR   C   + L C    C          + S + E          VD
Sbjct: 335 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVD 394

Query: 53  DGLGGAAAW-----EDVDSTAEPCPQ 73
           +     A W     E +  T +PCP+
Sbjct: 395 ERAAEQARWEAASKETIKKTTKPCPR 420


>gi|126012573 low density lipoprotein-related protein 2 [Homo sapiens]
          Length = 4655

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 10   RDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDG 54
            R   IV+ G+RC   S  C+   C+        WK     +  DG
Sbjct: 2689 RKHCIVDNGERCGASSFTCSNGRCIS-----EEWKCDNDNDCGDG 2728


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.138    0.486 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,451,105
Number of Sequences: 37866
Number of extensions: 123228
Number of successful extensions: 370
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 28
length of query: 73
length of database: 18,247,518
effective HSP length: 46
effective length of query: 27
effective length of database: 16,505,682
effective search space: 445653414
effective search space used: 445653414
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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