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Search of human proteins with 239756908
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756908 PREDICTED: similar to chorionic somatomammotropin
hormone 2 [Homo sapiens]
(96 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756908 PREDICTED: similar to chorionic somatomammotropin h... 201 1e-52
gi|4503083 chorionic somatomammotropin hormone 1 isoform 1 [Homo... 201 1e-52
gi|10334861 chorionic somatomammotropin hormone 2 isoform 1 [Hom... 201 1e-52
gi|12545381 chorionic somatomammotropin hormone-like 1 isoform 2... 187 2e-48
gi|12545378 chorionic somatomammotropin hormone-like 1 isoform 4... 187 2e-48
gi|12545376 chorionic somatomammotropin hormone-like 1 isoform 1... 187 2e-48
gi|38201628 chorionic somatomammotropin hormone-like 1 isoform 3... 187 2e-48
gi|13027812 growth hormone 1 isoform 1 [Homo sapiens] 175 8e-45
gi|13027816 growth hormone 1 isoform 3 [Homo sapiens] 175 8e-45
gi|13027814 growth hormone 1 isoform 2 [Homo sapiens] 175 8e-45
gi|4503991 growth hormone 2 isoform 1 [Homo sapiens] 164 2e-41
gi|13027822 growth hormone 2 isoform 4 [Homo sapiens] 164 2e-41
gi|12408687 chorionic somatomammotropin hormone 1 isoform 3 [Hom... 139 6e-34
gi|12408694 chorionic somatomammotropin hormone 2 isoform 3 [Hom... 139 6e-34
gi|13027818 growth hormone 1 isoform 4 [Homo sapiens] 129 4e-31
gi|12408685 chorionic somatomammotropin hormone 1 isoform 2 [Hom... 67 3e-12
gi|12408692 chorionic somatomammotropin hormone 2 isoform 2 [Hom... 67 3e-12
gi|13027826 growth hormone 2 isoform 3 [Homo sapiens] 46 6e-06
gi|13027824 growth hormone 2 isoform 2 [Homo sapiens] 45 1e-05
gi|4506105 prolactin precursor [Homo sapiens] 34 0.029
gi|126032338 ryanodine receptor 3 [Homo sapiens] 29 0.92
gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens] 28 1.2
gi|209364544 calsyntenin 2 [Homo sapiens] 28 1.2
gi|73611906 phosphorylase kinase, beta isoform b [Homo sapiens] 28 1.6
gi|4505783 phosphorylase kinase, beta isoform a [Homo sapiens] 28 1.6
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 27 2.7
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 27 2.7
gi|40068063 TBC1 domain family, member 22B [Homo sapiens] 27 2.7
gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens] 27 2.7
gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens] 27 2.7
>gi|239756908 PREDICTED: similar to chorionic somatomammotropin
hormone 2 [Homo sapiens]
Length = 96
Score = 201 bits (511), Expect = 1e-52
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA 60
MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA
Sbjct: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA 60
Query: 61 LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 96
LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
Sbjct: 61 LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 96
>gi|4503083 chorionic somatomammotropin hormone 1 isoform 1 [Homo
sapiens]
Length = 217
Score = 201 bits (511), Expect = 1e-52
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA 60
MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA
Sbjct: 122 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA 181
Query: 61 LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 96
LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
Sbjct: 182 LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 217
>gi|10334861 chorionic somatomammotropin hormone 2 isoform 1 [Homo
sapiens]
Length = 217
Score = 201 bits (511), Expect = 1e-52
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA 60
MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA
Sbjct: 122 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA 181
Query: 61 LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 96
LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
Sbjct: 182 LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 217
>gi|12545381 chorionic somatomammotropin hormone-like 1 isoform 2
precursor [Homo sapiens]
Length = 199
Score = 187 bits (474), Expect = 2e-48
Identities = 89/95 (93%), Positives = 90/95 (94%)
Query: 2 FANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDAL 61
F NNLVYDTSDSDDYHLLKDLEEGIQ LMGRLEDGS TGQ LKQTYSKFDTNSHNHDAL
Sbjct: 105 FTNNLVYDTSDSDDYHLLKDLEEGIQMLMGRLEDGSHLTGQTLKQTYSKFDTNSHNHDAL 164
Query: 62 LKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 96
LKNYGLL+CFRKDMDKVETFLRMVQCRSVEGSCGF
Sbjct: 165 LKNYGLLHCFRKDMDKVETFLRMVQCRSVEGSCGF 199
>gi|12545378 chorionic somatomammotropin hormone-like 1 isoform 4
[Homo sapiens]
Length = 139
Score = 187 bits (474), Expect = 2e-48
Identities = 89/95 (93%), Positives = 90/95 (94%)
Query: 2 FANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDAL 61
F NNLVYDTSDSDDYHLLKDLEEGIQ LMGRLEDGS TGQ LKQTYSKFDTNSHNHDAL
Sbjct: 45 FTNNLVYDTSDSDDYHLLKDLEEGIQMLMGRLEDGSHLTGQTLKQTYSKFDTNSHNHDAL 104
Query: 62 LKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 96
LKNYGLL+CFRKDMDKVETFLRMVQCRSVEGSCGF
Sbjct: 105 LKNYGLLHCFRKDMDKVETFLRMVQCRSVEGSCGF 139
>gi|12545376 chorionic somatomammotropin hormone-like 1 isoform 1
precursor [Homo sapiens]
Length = 222
Score = 187 bits (474), Expect = 2e-48
Identities = 89/95 (93%), Positives = 90/95 (94%)
Query: 2 FANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDAL 61
F NNLVYDTSDSDDYHLLKDLEEGIQ LMGRLEDGS TGQ LKQTYSKFDTNSHNHDAL
Sbjct: 128 FTNNLVYDTSDSDDYHLLKDLEEGIQMLMGRLEDGSHLTGQTLKQTYSKFDTNSHNHDAL 187
Query: 62 LKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 96
LKNYGLL+CFRKDMDKVETFLRMVQCRSVEGSCGF
Sbjct: 188 LKNYGLLHCFRKDMDKVETFLRMVQCRSVEGSCGF 222
>gi|38201628 chorionic somatomammotropin hormone-like 1 isoform 3
[Homo sapiens]
Length = 128
Score = 187 bits (474), Expect = 2e-48
Identities = 89/95 (93%), Positives = 90/95 (94%)
Query: 2 FANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDAL 61
F NNLVYDTSDSDDYHLLKDLEEGIQ LMGRLEDGS TGQ LKQTYSKFDTNSHNHDAL
Sbjct: 34 FTNNLVYDTSDSDDYHLLKDLEEGIQMLMGRLEDGSHLTGQTLKQTYSKFDTNSHNHDAL 93
Query: 62 LKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 96
LKNYGLL+CFRKDMDKVETFLRMVQCRSVEGSCGF
Sbjct: 94 LKNYGLLHCFRKDMDKVETFLRMVQCRSVEGSCGF 128
>gi|13027812 growth hormone 1 isoform 1 [Homo sapiens]
Length = 217
Score = 175 bits (443), Expect = 8e-45
Identities = 85/96 (88%), Positives = 89/96 (92%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA 60
+FAN+LVY SDS+ Y LLKDLEEGIQTLMGRLEDGS RTGQI KQTYSKFDTNSHN DA
Sbjct: 122 VFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDA 181
Query: 61 LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 96
LLKNYGLLYCFRKDMDKVETFLR+VQCRSVEGSCGF
Sbjct: 182 LLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF 217
>gi|13027816 growth hormone 1 isoform 3 [Homo sapiens]
Length = 177
Score = 175 bits (443), Expect = 8e-45
Identities = 85/96 (88%), Positives = 89/96 (92%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA 60
+FAN+LVY SDS+ Y LLKDLEEGIQTLMGRLEDGS RTGQI KQTYSKFDTNSHN DA
Sbjct: 82 VFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDA 141
Query: 61 LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 96
LLKNYGLLYCFRKDMDKVETFLR+VQCRSVEGSCGF
Sbjct: 142 LLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF 177
>gi|13027814 growth hormone 1 isoform 2 [Homo sapiens]
Length = 202
Score = 175 bits (443), Expect = 8e-45
Identities = 85/96 (88%), Positives = 89/96 (92%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA 60
+FAN+LVY SDS+ Y LLKDLEEGIQTLMGRLEDGS RTGQI KQTYSKFDTNSHN DA
Sbjct: 107 VFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDA 166
Query: 61 LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 96
LLKNYGLLYCFRKDMDKVETFLR+VQCRSVEGSCGF
Sbjct: 167 LLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF 202
>gi|4503991 growth hormone 2 isoform 1 [Homo sapiens]
Length = 217
Score = 164 bits (414), Expect = 2e-41
Identities = 80/96 (83%), Positives = 85/96 (88%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA 60
+FAN+LVY SDS+ Y LKDLEEGIQTLM RLEDGS RTGQI Q+YSKFDT SHN DA
Sbjct: 122 VFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDDA 181
Query: 61 LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 96
LLKNYGLLYCFRKDMDKVETFLR+VQCRSVEGSCGF
Sbjct: 182 LLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF 217
>gi|13027822 growth hormone 2 isoform 4 [Homo sapiens]
Length = 202
Score = 164 bits (414), Expect = 2e-41
Identities = 80/96 (83%), Positives = 85/96 (88%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDA 60
+FAN+LVY SDS+ Y LKDLEEGIQTLM RLEDGS RTGQI Q+YSKFDT SHN DA
Sbjct: 107 VFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDDA 166
Query: 61 LLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF 96
LLKNYGLLYCFRKDMDKVETFLR+VQCRSVEGSCGF
Sbjct: 167 LLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF 202
>gi|12408687 chorionic somatomammotropin hormone 1 isoform 3 [Homo
sapiens]
Length = 122
Score = 139 bits (349), Expect = 6e-34
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 32 RLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVE 91
RLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVE
Sbjct: 58 RLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVE 117
Query: 92 GSCGF 96
GSCGF
Sbjct: 118 GSCGF 122
>gi|12408694 chorionic somatomammotropin hormone 2 isoform 3 [Homo
sapiens]
Length = 122
Score = 139 bits (349), Expect = 6e-34
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 32 RLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVE 91
RLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVE
Sbjct: 58 RLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVE 117
Query: 92 GSCGF 96
GSCGF
Sbjct: 118 GSCGF 122
>gi|13027818 growth hormone 1 isoform 4 [Homo sapiens]
Length = 122
Score = 129 bits (325), Expect = 4e-31
Identities = 61/65 (93%), Positives = 62/65 (95%)
Query: 32 RLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVE 91
RLEDGS RTGQI KQTYSKFDTNSHN DALLKNYGLLYCFRKDMDKVETFLR+VQCRSVE
Sbjct: 58 RLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVE 117
Query: 92 GSCGF 96
GSCGF
Sbjct: 118 GSCGF 122
>gi|12408685 chorionic somatomammotropin hormone 1 isoform 2 [Homo
sapiens]
Length = 256
Score = 67.0 bits (162), Expect = 3e-12
Identities = 31/31 (100%), Positives = 31/31 (100%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMG 31
MFANNLVYDTSDSDDYHLLKDLEEGIQTLMG
Sbjct: 122 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMG 152
>gi|12408692 chorionic somatomammotropin hormone 2 isoform 2 [Homo
sapiens]
Length = 167
Score = 67.0 bits (162), Expect = 3e-12
Identities = 31/31 (100%), Positives = 31/31 (100%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMG 31
MFANNLVYDTSDSDDYHLLKDLEEGIQTLMG
Sbjct: 122 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMG 152
>gi|13027826 growth hormone 2 isoform 3 [Homo sapiens]
Length = 245
Score = 46.2 bits (108), Expect = 6e-06
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQTLMG 31
+FAN+LVY SDS+ Y LKDLEEGIQTL+G
Sbjct: 122 VFANSLVYGASDSNVYRHLKDLEEGIQTLIG 152
>gi|13027824 growth hormone 2 isoform 2 [Homo sapiens]
Length = 256
Score = 45.4 bits (106), Expect = 1e-05
Identities = 22/30 (73%), Positives = 25/30 (83%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQTLM 30
+FAN+LVY SDS+ Y LKDLEEGIQTLM
Sbjct: 122 VFANSLVYGASDSNVYRHLKDLEEGIQTLM 151
>gi|4506105 prolactin precursor [Homo sapiens]
Length = 227
Score = 33.9 bits (76), Expect = 0.029
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 65 YGLLYCFRKDMDKVETFLRMVQCRSVEGS 93
Y LL+C R+D K++ +L++++CR + +
Sbjct: 197 YNLLHCLRRDSHKIDNYLKLLKCRIIHNN 225
>gi|126032338 ryanodine receptor 3 [Homo sapiens]
Length = 4870
Score = 28.9 bits (63), Expect = 0.92
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGIQ---TLMGRLEDGSRRTGQILKQTYSKFDTNSHN 57
+FAN + + DS LLK+L + +Q ++ L +G+ G I KQ +S N
Sbjct: 3846 VFANMQMKLSQDSSQIELLKELLDLLQDMVVMLLSLLEGNVVNGTIGKQMVDTLVESSTN 3905
Query: 58 HDALLKNYGLLYCFRKDMDKVETF 81
+ +LK + ++ KD+ +TF
Sbjct: 3906 VEMILKFFD-MFLKLKDLTSSDTF 3928
>gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]
Length = 4967
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 1 MFANNLVYDTSDSDDYHLLK---DLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHN 57
+FA+ + + DS LLK DL++ + ++ + +G+ G I KQ +S+N
Sbjct: 3950 VFAHMQMKLSQDSSQIELLKELMDLQKDMVVMLLSMLEGNVVNGTIGKQMVDMLVESSNN 4009
Query: 58 HDALLKNYGLLYCFRKDMDKVETF 81
+ +LK + ++ KD+ +TF
Sbjct: 4010 VEMILKFFD-MFLKLKDLTSSDTF 4032
>gi|209364544 calsyntenin 2 [Homo sapiens]
Length = 955
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 36 GSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETF 81
G R + + K + N H++ + N L++ RKD D+ +TF
Sbjct: 392 GVRAEKETILCNSDKTEMNRHHYALYVHNCRLVFLLRKDFDQADTF 437
>gi|73611906 phosphorylase kinase, beta isoform b [Homo sapiens]
Length = 1086
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 53 TNSHNHDALLKNYGLLYCFRKDMDKVETF 81
T+ H A+ G+LYC+ + DKV+ F
Sbjct: 104 THELEHSAIKCMRGILYCYMRQADKVQQF 132
>gi|4505783 phosphorylase kinase, beta isoform a [Homo sapiens]
Length = 1093
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 53 TNSHNHDALLKNYGLLYCFRKDMDKVETF 81
T+ H A+ G+LYC+ + DKV+ F
Sbjct: 111 THELEHSAIKCMRGILYCYMRQADKVQQF 139
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 1 MFANNLVYDTSDSDDYHLLK---DLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHN 57
+FA+ ++ DS LLK DL++ + ++ L +G+ G I +Q +S N
Sbjct: 3989 VFAHMMMKLAQDSSQIELLKELLDLQKDMVVMLLSLLEGNVVNGMIARQMVDMLVESSSN 4048
Query: 58 HDALLKNYGLLYCFRKDMDKVETF 81
+ +LK + ++ KD+ E F
Sbjct: 4049 VEMILKFFD-MFLKLKDIVGSEAF 4071
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 1 MFANNLVYDTSDSDDYHLLK---DLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHN 57
+FA+ ++ DS LLK DL++ + ++ L +G+ G I +Q +S N
Sbjct: 3994 VFAHMMMKLAQDSSQIELLKELLDLQKDMVVMLLSLLEGNVVNGMIARQMVDMLVESSSN 4053
Query: 58 HDALLKNYGLLYCFRKDMDKVETF 81
+ +LK + ++ KD+ E F
Sbjct: 4054 VEMILKFFD-MFLKLKDIVGSEAF 4076
>gi|40068063 TBC1 domain family, member 22B [Homo sapiens]
Length = 505
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 12 DSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCF 71
++D + + L +GIQ + G ++ + L++ S+ D HNH + L + F
Sbjct: 348 EADSFWCMSKLLDGIQDNYTFAQPGIQKKVKALEELVSRIDEQVHNHFRRYEVEYLQFAF 407
Query: 72 R 72
R
Sbjct: 408 R 408
>gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens]
Length = 757
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGI 26
MF N ++Y++SD D YH+ +++ +
Sbjct: 673 MFQNAVMYNSSDHDVYHMAVEMQRDV 698
>gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens]
Length = 1235
Score = 27.3 bits (59), Expect = 2.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 1 MFANNLVYDTSDSDDYHLLKDLEEGI 26
MF N ++Y++SD D YH+ +++ +
Sbjct: 779 MFQNAVMYNSSDHDVYHMAVEMQRDV 804
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,335,181
Number of Sequences: 37866
Number of extensions: 118096
Number of successful extensions: 354
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 45
length of query: 96
length of database: 18,247,518
effective HSP length: 67
effective length of query: 29
effective length of database: 15,710,496
effective search space: 455604384
effective search space used: 455604384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.