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Search of human proteins with 11968182
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11968182 ribosomal protein S18 [Homo sapiens]
(152 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11968182 ribosomal protein S18 [Homo sapiens] 305 7e-84
gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Hom... 31 0.36
gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Hom... 31 0.36
gi|63162572 chaperonin containing TCP1, subunit 3 isoform a [Hom... 31 0.36
gi|153085395 histone deacetylase 4 [Homo sapiens] 29 1.8
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 29 1.8
gi|122937185 hypothetical protein LOC57189 [Homo sapiens] 29 1.8
gi|32528297 ribosomal protein S6 kinase, polypeptide 5 isoform b... 28 2.3
gi|32528295 ribosomal protein S6 kinase, polypeptide 5 isoform a... 28 2.3
gi|32698714 hypothetical protein LOC284058 [Homo sapiens] 28 2.3
gi|9910266 kinesin family member 15 [Homo sapiens] 28 3.0
gi|110349719 titin isoform N2-A [Homo sapiens] 28 3.9
gi|110349717 titin isoform novex-2 [Homo sapiens] 28 3.9
gi|110349713 titin isoform novex-1 [Homo sapiens] 28 3.9
gi|110349715 titin isoform N2-B [Homo sapiens] 28 3.9
gi|21361348 UTP14, U3 small nucleolar ribonucleoprotein, homolog... 28 3.9
gi|4557511 death-associated protein kinase 3 [Homo sapiens] 27 5.1
gi|109826351 melanophilin isoform 2 [Homo sapiens] 27 5.1
gi|13129108 melanophilin isoform 1 [Homo sapiens] 27 5.1
gi|169790825 odz, odd Oz/ten-m homolog 4 [Homo sapiens] 27 6.7
>gi|11968182 ribosomal protein S18 [Homo sapiens]
Length = 152
Score = 305 bits (782), Expect = 7e-84
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152
>gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Homo
sapiens]
Length = 544
Score = 31.2 bits (69), Expect = 0.36
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 30 ITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKD 89
ITAI+ V + + + R + R EL ED+V +++ KI D + D
Sbjct: 308 ITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIK---KIGDEYFTFITD 364
Query: 90 VKDGKYSQVLANGLDNKLREDLER 113
KD K +L G ++ ++ER
Sbjct: 365 CKDPKACTILLRGASKEILSEVER 388
>gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Homo
sapiens]
Length = 507
Score = 31.2 bits (69), Expect = 0.36
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 30 ITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKD 89
ITAI+ V + + + R + R EL ED+V +++ KI D + D
Sbjct: 271 ITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIK---KIGDEYFTFITD 327
Query: 90 VKDGKYSQVLANGLDNKLREDLER 113
KD K +L G ++ ++ER
Sbjct: 328 CKDPKACTILLRGASKEILSEVER 351
>gi|63162572 chaperonin containing TCP1, subunit 3 isoform a [Homo
sapiens]
Length = 545
Score = 31.2 bits (69), Expect = 0.36
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 30 ITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKD 89
ITAI+ V + + + R + R EL ED+V +++ KI D + D
Sbjct: 309 ITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIK---KIGDEYFTFITD 365
Query: 90 VKDGKYSQVLANGLDNKLREDLER 113
KD K +L G ++ ++ER
Sbjct: 366 CKDPKACTILLRGASKEILSEVER 389
>gi|153085395 histone deacetylase 4 [Homo sapiens]
Length = 1084
Score = 28.9 bits (63), Expect = 1.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 84 LNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRH 125
L + K+ + GK S V + + KL+E + KK AHR L H
Sbjct: 152 LQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLNH 193
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 28.9 bits (63), Expect = 1.8
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 33 IKGVGRRYAHV-VLRKADIDLTKRAGELTEDEVERVITIMQ 72
+KG+ R + +L + +I LTK+ +L++DEV ++ I+Q
Sbjct: 1022 VKGIKERELEIKLLNEKNISLTKQIDQLSKDEVGKLTQIIQ 1062
>gi|122937185 hypothetical protein LOC57189 [Homo sapiens]
Length = 455
Score = 28.9 bits (63), Expect = 1.8
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 57 GELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKK 116
G++ ED+V V + +PR + +W L + D+ +G + +A+G +K++ D +K
Sbjct: 70 GDVEEDQVVAVFVVTFDPRSGNMVEWCLPQDIDL-EGVEFKSMASG-SHKIQSDFIYFRK 127
Query: 117 IRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGV 148
GL F + V + + G R ++VG+
Sbjct: 128 -GPFFGLACFANMPVESELER--GARMKSVGI 156
>gi|32528297 ribosomal protein S6 kinase, polypeptide 5 isoform b
[Homo sapiens]
Length = 549
Score = 28.5 bits (62), Expect = 2.3
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 7 EKFQHILRVLNTNIDGRRKIAFAITAIKG--VGRRYAHVVLRKADIDLTKRAGELTEDEV 64
E F+ +L+VL T G+ F + I G G+ YA VL+KA I + E T E
Sbjct: 47 ENFE-LLKVLGTGAYGK---VFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTER 102
Query: 65 ERVITIMQNP 74
+ + I Q+P
Sbjct: 103 QVLEHIRQSP 112
>gi|32528295 ribosomal protein S6 kinase, polypeptide 5 isoform a
[Homo sapiens]
Length = 802
Score = 28.5 bits (62), Expect = 2.3
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 7 EKFQHILRVLNTNIDGRRKIAFAITAIKG--VGRRYAHVVLRKADIDLTKRAGELTEDEV 64
E F+ +L+VL T G+ F + I G G+ YA VL+KA I + E T E
Sbjct: 47 ENFE-LLKVLGTGAYGK---VFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTER 102
Query: 65 ERVITIMQNP 74
+ + I Q+P
Sbjct: 103 QVLEHIRQSP 112
>gi|32698714 hypothetical protein LOC284058 [Homo sapiens]
Length = 1105
Score = 28.5 bits (62), Expect = 2.3
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 61 EDEVERVITIMQNPRQYKIP-------DWFLNRQKDVKDGKYSQVLANGLDNKLREDLER 113
E ++E +P Q +P W +R V + Q + L+ ++R+ +
Sbjct: 410 ESDIEEEELTRADPEQRHVPLRRRSEWKWAADRAAIVSRWNWLQAHVSDLEYRIRQQTDI 469
Query: 114 LKKIRAHRGL 123
K+IRA++GL
Sbjct: 470 YKQIRANKGL 479
>gi|9910266 kinesin family member 15 [Homo sapiens]
Length = 1388
Score = 28.1 bits (61), Expect = 3.0
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 46 RKADIDLTKRAGELTEDEVERVI-TIMQNPRQYKIPDWFLN--------RQKDVKDGKYS 96
+K +++ K ++E V+ + ++P+ K P F ++++++DG+ S
Sbjct: 1110 KKEEVEQKKNEYNFKMRQLEHVMDSAAEDPQSPKTPPHFQTHLAKLLETQEQEIEDGRAS 1169
Query: 97 QVLANGLDNKLREDLE--RLKKIRAHRGLRHFWGLRVRGQ 134
+ L KL ED E + +R LR LR+ Q
Sbjct: 1170 KTSLEHLVTKLNEDREVKNAEILRMKEQLREMENLRLESQ 1209
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 27.7 bits (60), Expect = 3.9
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 38 RRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQ 97
+ +A++ +++ ++ TK + T +E + + R+ WF N + +K KY +
Sbjct: 12273 KTHANLFVKEPPVEFTKPLEDQTVEEGATAVLECEVSRENAKVKWFKNGTEILKSKKY-E 12331
Query: 98 VLANGLDNKL 107
++A+G KL
Sbjct: 12332 IVADGRVRKL 12341
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 27.7 bits (60), Expect = 3.9
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 38 RRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQ 97
+ +A++ +++ ++ TK + T +E + + R+ WF N + +K KY +
Sbjct: 5968 KTHANLFVKEPPVEFTKPLEDQTVEEGATAVLECEVSRENAKVKWFKNGTEILKSKKY-E 6026
Query: 98 VLANGLDNKL 107
++A+G KL
Sbjct: 6027 IVADGRVRKL 6036
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 27.7 bits (60), Expect = 3.9
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 38 RRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQ 97
+ +A++ +++ ++ TK + T +E + + R+ WF N + +K KY +
Sbjct: 5901 KTHANLFVKEPPVEFTKPLEDQTVEEGATAVLECEVSRENAKVKWFKNGTEILKSKKY-E 5959
Query: 98 VLANGLDNKL 107
++A+G KL
Sbjct: 5960 IVADGRVRKL 5969
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 27.7 bits (60), Expect = 3.9
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 38 RRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQ 97
+ +A++ +++ ++ TK + T +E + + R+ WF N + +K KY +
Sbjct: 5776 KTHANLFVKEPPVEFTKPLEDQTVEEGATAVLECEVSRENAKVKWFKNGTEILKSKKY-E 5834
Query: 98 VLANGLDNKL 107
++A+G KL
Sbjct: 5835 IVADGRVRKL 5844
>gi|21361348 UTP14, U3 small nucleolar ribonucleoprotein, homolog A
[Homo sapiens]
Length = 771
Score = 27.7 bits (60), Expect = 3.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 86 RQKDVKDGKYSQVLANGLDNKLREDLERLKKI 117
R+K +K KY +V+ G K ++ E+L+K+
Sbjct: 243 REKKIKSKKYHKVVKKGKAKKALKEFEQLRKV 274
>gi|4557511 death-associated protein kinase 3 [Homo sapiens]
Length = 454
Score = 27.3 bits (59), Expect = 5.1
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 34 KGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKI 79
KG G+ YA ++K + ++R ++ +E+ER + I++ R I
Sbjct: 33 KGTGKEYAAKFIKKRRLSSSRRG--VSREEIEREVNILREIRHPNI 76
>gi|109826351 melanophilin isoform 2 [Homo sapiens]
Length = 572
Score = 27.3 bits (59), Expect = 5.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKG 35
+S + E+ QH+L V+ + D RRK + A+KG
Sbjct: 7 LSKLTDEEAQHVLEVVQRDFDLRRKEEERLEALKG 41
>gi|13129108 melanophilin isoform 1 [Homo sapiens]
Length = 600
Score = 27.3 bits (59), Expect = 5.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKG 35
+S + E+ QH+L V+ + D RRK + A+KG
Sbjct: 7 LSKLTDEEAQHVLEVVQRDFDLRRKEEERLEALKG 41
>gi|169790825 odz, odd Oz/ten-m homolog 4 [Homo sapiens]
Length = 2769
Score = 26.9 bits (58), Expect = 6.7
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 31 TAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDV 90
T + G RRY + L+ + L R G ++E RV+ + RQ + + Q+ +
Sbjct: 2654 TVLNGRTRRYTDIQLQYGALCLNTRYGTTLDEEKARVLEL---ARQRAVRQAWAREQQRL 2710
Query: 91 KDGK 94
++G+
Sbjct: 2711 REGE 2714
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,998,389
Number of Sequences: 37866
Number of extensions: 189584
Number of successful extensions: 629
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 20
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.