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Search of human proteins with 239756825
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756825 PREDICTED: hypothetical protein [Homo sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756825 PREDICTED: hypothetical protein [Homo sapiens] 216 4e-57
gi|239751326 PREDICTED: hypothetical protein XP_002347792 [Homo ... 216 4e-57
gi|239745825 PREDICTED: hypothetical protein XP_002343558 [Homo ... 216 4e-57
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 45 9e-06
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 44 2e-05
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 44 3e-05
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 42 1e-04
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 41 2e-04
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 41 2e-04
gi|239750235 PREDICTED: hypothetical protein [Homo sapiens] 41 2e-04
gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo ... 41 2e-04
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 40 3e-04
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 40 3e-04
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens] 40 5e-04
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 39 9e-04
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 39 9e-04
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 39 9e-04
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 39 9e-04
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 39 9e-04
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 39 9e-04
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 39 9e-04
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 39 9e-04
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 39 0.001
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 37 0.003
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 35 0.013
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 35 0.013
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 35 0.017
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 35 0.017
gi|4505379 nuclear factor erythroid 2-like 1 [Homo sapiens] 35 0.017
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 35 0.017
>gi|239756825 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 216 bits (549), Expect = 4e-57
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS 60
MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS
Sbjct: 1 MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS 60
Query: 61 SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS
Sbjct: 61 SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
>gi|239751326 PREDICTED: hypothetical protein XP_002347792 [Homo
sapiens]
Length = 117
Score = 216 bits (549), Expect = 4e-57
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS 60
MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS
Sbjct: 1 MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS 60
Query: 61 SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS
Sbjct: 61 SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
>gi|239745825 PREDICTED: hypothetical protein XP_002343558 [Homo
sapiens]
Length = 117
Score = 216 bits (549), Expect = 4e-57
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS 60
MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS
Sbjct: 1 MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS 60
Query: 61 SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS
Sbjct: 61 SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 45.4 bits (106), Expect = 9e-06
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSF 114
R+A +S +SS+S++SS SSS+++SSS S S SSS S S S+S S S S + S
Sbjct: 2608 RAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2667
Query: 115 TSS 117
+SS
Sbjct: 2668 SSS 2670
Score = 44.7 bits (104), Expect = 2e-05
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
S+R +S SS+S++SS SSS+++SSS S S SSS S S S+S S S S + S +
Sbjct: 2606 SSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2665
Query: 116 SS 117
SS
Sbjct: 2666 SS 2667
Score = 43.9 bits (102), Expect = 3e-05
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 44 SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
SS P S+ SS +SS+S++SS SSS+++SSS S S SSS S S S+S S S
Sbjct: 2606 SSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2665
Score = 43.5 bits (101), Expect = 4e-05
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
S+ SS +SS+S++SS SSS+++SSS S S SSS S S S+S S S S + S T
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTT 2673
Score = 43.5 bits (101), Expect = 4e-05
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 60 SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
SS +SS+S++SS SSS+++SSS S S SSS S S S+S S S S + S +SS
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2671
Score = 43.5 bits (101), Expect = 4e-05
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
S+ SS +SS+S++SS SSS+++SSS S S SSS S S S+S S +D
Sbjct: 2626 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTD 2674
Score = 43.1 bits (100), Expect = 5e-05
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
S SS +SS+S++SS SSS+++SSS S S SSS S S S+S S S S + S +
Sbjct: 2611 SPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670
Query: 116 SS 117
S+
Sbjct: 2671 ST 2672
Score = 42.7 bits (99), Expect = 6e-05
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 52 RLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLA 111
R A SS +SS+S++SS SSS+++SSS S S SSS S S S+S S S S +
Sbjct: 2608 RAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2667
Query: 112 GSFTSS 117
S +++
Sbjct: 2668 SSSSTT 2673
Score = 42.0 bits (97), Expect = 1e-04
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
SA S S S++SS SSS+++SSS S S SSS S S S+S S S S + S +
Sbjct: 2603 SAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2662
Query: 116 SS 117
SS
Sbjct: 2663 SS 2664
Score = 41.2 bits (95), Expect = 2e-04
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
S+ SS +SS+S++SS SSS+++SSS S S SSS S S S+S + D
Sbjct: 2628 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDED 2676
Score = 41.2 bits (95), Expect = 2e-04
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
S+ SS +SS+S++SS SSS+++SSS S S SSS S S S +D S
Sbjct: 2630 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDS 2677
Score = 39.3 bits (90), Expect = 7e-04
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
+A + + ++S++SS SSS+++SSS S S SSS S S S+S S S S + S +
Sbjct: 2604 AASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2663
Query: 116 SS 117
SS
Sbjct: 2664 SS 2665
Score = 38.5 bits (88), Expect = 0.001
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 58 RDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
R+ S SS + + + SSS+++SSS S S SSS S S S+S S S S + S +SS
Sbjct: 2600 RNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2659
Score = 38.5 bits (88), Expect = 0.001
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
S+ SS +SS+S++SS SSS+++SSS S S SSS S S + + S
Sbjct: 2631 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSS 2678
Score = 38.5 bits (88), Expect = 0.001
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
S+ SS +SS+S++SS SSS+++SSS S S SSS S + S SD
Sbjct: 2634 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSD 2682
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSF 114
R+ +S +++ +SS SSS+++SSS S S SSS S S S+S S S S + S
Sbjct: 2600 RNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2659
Query: 115 TSS 117
+SS
Sbjct: 2660 SSS 2662
Score = 37.0 bits (84), Expect = 0.003
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
S+ SS +SS+S++SS SSS+++SSS S S SSS + +S S D
Sbjct: 2635 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDD 2683
Score = 37.0 bits (84), Expect = 0.003
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAG 112
S+ SS +SS+S++SS SSS+++SSS S S SSS + S+ S + AG
Sbjct: 2636 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAG 2692
Score = 36.6 bits (83), Expect = 0.004
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
S+ SS +SS+S++SS SSS+++SSS S S SSS S + S S
Sbjct: 2633 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCS 2680
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 63 TSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
T + +++ +++ ASSS S S SSS S S S+S S S S + S +SS
Sbjct: 2597 TGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2651
Score = 30.8 bits (68), Expect = 0.24
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPS 93
S+ SS +SS+S++S+ + S+ +S +P+P++ PS
Sbjct: 2657 SSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPS 2694
Score = 29.3 bits (64), Expect = 0.70
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 29/83 (34%)
Query: 64 SSTSTASSDESSSAAASSSG-----------------------------RSPSPSSSPSF 94
SS+S++S SSS+++SSSG R+ SP+SS S
Sbjct: 2559 SSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSS 2618
Query: 95 SGSASDSFSDLLMLSLAGSFTSS 117
S S+S S S S + S +SS
Sbjct: 2619 SSSSSSSSSSSSSSSSSSSSSSS 2641
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/30 (53%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 71 SDESSSAAASSSGRSPSPSSSPSFSGSASD 100
++ES S+++SSSG S S SSS S SGS ++
Sbjct: 2554 AEESESSSSSSSGSSSSSSSSSS-SGSETE 2582
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 44.3 bits (103), Expect = 2e-05
Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 50 PLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
P R I ++ SS +SS+S++SS SSS+++SSS S S SSS S S S+S SFS
Sbjct: 142 PNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-SSSSSTSFS 194
Score = 41.6 bits (96), Expect = 1e-04
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 38 EKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGS 97
EK + T +L+++ D + + TS++SS SSS+++SSS S S SSS S S S
Sbjct: 120 EKLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 179
Query: 98 ASDSFS 103
+S S S
Sbjct: 180 SSSSSS 185
Score = 41.6 bits (96), Expect = 1e-04
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 47 RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
RR+ L+ S TSS+S++SS SSS+++SSS S S SSS S S S+S S S
Sbjct: 132 RRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188
Score = 40.8 bits (94), Expect = 2e-04
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLM 107
S+ SS +SS+S++SS SSS+++SSS S S SSS S S S S S LM
Sbjct: 149 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLM 200
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 74 SSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
SSS+++SSS S S SSS S S S+S S S S + S ++S
Sbjct: 149 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTS 192
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/49 (42%), Positives = 25/49 (51%)
Query: 69 ASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
A D + S SSS S S SSS S S S+S S S S + S +SS
Sbjct: 138 AGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 71 SDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
S +SS+++SSS S S SSS S S S+S S S S + S +S+
Sbjct: 145 SIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 191
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 43.9 bits (102), Expect = 3e-05
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 36 SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS 95
S K +S +R R +R S +SS+S++SS SSS ++SSSG S S SSS S S
Sbjct: 552 SKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSS 611
Query: 96 GSASDSFSD 104
++ S D
Sbjct: 612 STSGSSSRD 620
Score = 41.6 bits (96), Expect = 1e-04
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 43 KSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSF 102
KS T+ R R+ +S + S S++SS SSS+ +SSSG S S SS S S S+S S
Sbjct: 553 KSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSS 612
Query: 103 SDLLMLSLAGSFTSS 117
+ + S TSS
Sbjct: 613 TSGSSSRDSSSSTSS 627
Score = 37.4 bits (85), Expect = 0.003
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 44 SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
S +R R S+ S+ +SS S++SS SSS ++SSS S S SSS S S S S
Sbjct: 571 SKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSS 628
Score = 36.6 bits (83), Expect = 0.004
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
S+ SS TSS+S +SS SS++ SSS S S S S S S+S S S
Sbjct: 581 SSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSS 628
Score = 35.8 bits (81), Expect = 0.007
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 43 KSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSF 102
K+ TR R R+ + S S +S++SS SSS ++SS S S SSS S S+S S
Sbjct: 555 KTKTRSRSRGRARN-KTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSST 613
Query: 103 SDLLMLSLAGSFTSS 117
S + S +SS
Sbjct: 614 SGSSSRDSSSSTSSS 628
Score = 35.0 bits (79), Expect = 0.013
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 43 KSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSF 102
K+S R S+ SS +SS+ ++SS SSS+ +SSS S + SS S S++ S
Sbjct: 569 KTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSS 628
Query: 103 SD 104
S+
Sbjct: 629 SE 630
Score = 33.5 bits (75), Expect = 0.037
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
++ S +SS+ ++SS SSS+++S+SG S SSS + S S S S S
Sbjct: 588 TSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRS 635
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 42.0 bits (97), Expect = 1e-04
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
R R SS +SS+S++SS SSS+++SSS S S SSS S S S+S
Sbjct: 2603 RKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647
Score = 41.2 bits (95), Expect = 2e-04
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 58 RDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
R SS +SS+S++SS SSS+++SSS S S SSS S S S+S S
Sbjct: 2605 RRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648
Score = 41.2 bits (95), Expect = 2e-04
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
RS+ SS +SS+S++SS SSS+++SSS S S SSS S S S S
Sbjct: 2606 RSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650
Score = 40.0 bits (92), Expect = 4e-04
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 47 RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPS 93
+RR S+ SS +SS+S++SS SSS+++SSS S S SSSPS
Sbjct: 2604 KRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650
Score = 39.7 bits (91), Expect = 5e-04
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 49 RPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
RP + R +SS+S++SS SSS+++SSS S S SSS S S S+S S S
Sbjct: 2594 RPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648
Score = 39.7 bits (91), Expect = 5e-04
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 60 SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
SS +SS+S++SS SSS+++SSS S S SSS S S S+S S
Sbjct: 2609 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650
Score = 37.4 bits (85), Expect = 0.003
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 48 RRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPS 93
+R R S+ SS +SS+S++SS SSS+++SSS S S SSS S
Sbjct: 2602 KRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647
Score = 36.6 bits (83), Expect = 0.004
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSG 96
S+ SS +SS+S++SS SSS+++SSS S S S SP+ G
Sbjct: 2615 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPG 2655
Score = 35.4 bits (80), Expect = 0.010
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 50 PLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
P +R R T + S SSS+++SSS S S SSS S S S+S S S
Sbjct: 2586 PKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2639
Score = 35.4 bits (80), Expect = 0.010
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 47 RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSS 91
R+R S+ SS +SS+S++SS SSS+++SSS S S SSS
Sbjct: 2603 RKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647
Score = 33.9 bits (76), Expect = 0.028
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 51 LRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGS 97
L ++ A++ +SS+S++SS SSS+++SSS S SSS S S
Sbjct: 2521 LAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 63 TSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSA 98
+SS+S++SS SSS+++SSS S S SSS GS+
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 57 ARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
A+ S ++ A SSS+++SSS S S SSS S S S+ S SD
Sbjct: 2515 AQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSD 2562
Score = 32.7 bits (73), Expect = 0.063
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
S+ SS +SS+S++SS SSS+++S S P P + P
Sbjct: 2624 SSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALP 2660
Score = 32.3 bits (72), Expect = 0.082
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 70 SSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
SS SSS+++SSS S S SSS S S+SDS
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDS 2563
Score = 32.3 bits (72), Expect = 0.082
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
S+ SS +SS+S++SS SSS+++SSS SP+ + AS
Sbjct: 2621 SSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPAS 2664
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 64 SSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
SS+S++SS SSS+++SSS S S SS S S +S
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
+ R+ T SSS+++SSS S S SSS S S S+S S S S + S +
Sbjct: 2589 AVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648
Query: 116 SS 117
S
Sbjct: 2649 PS 2650
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 69 ASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDL 105
+SS SSS+++SSS S S SSS S S S+ S L
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL 2568
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 66 TSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
+S++SS SSS+++SSS S S SS S S S S
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASSS---------GRSPSPSSSPSFSGSA 98
+S R TS+ S +SSD S S + S++ GRSPSP+S G A
Sbjct: 256 KSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDA 308
Score = 29.6 bits (65), Expect = 0.53
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 68 TASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
++SS SSS+++SSS S S SSS S S S+ S
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 67 STASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTS 116
ST + S+ AA + S SSS S S S+S S S S +GS +S
Sbjct: 2512 STGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSS 2561
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 40.8 bits (94), Expect = 2e-04
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 16 VLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESS 75
+LR++ + F + ++S E S R RS R S +S+ SS SS
Sbjct: 405 MLRQIMTGFGELSYFMYSDSDSEPTG-SVSNRNMERAESRSGRGGS-GGGSSSGSSSSSS 462
Query: 76 SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTS 116
S+++SSS S S S S S G +S++ SDL S GS +S
Sbjct: 463 SSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSS 503
Score = 30.0 bits (66), Expect = 0.41
Identities = 27/69 (39%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 56 SARDSSITSSTSTAS-------SDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLML 108
S DS T S S + S S SSSG S S SSS S S S+S S S
Sbjct: 422 SDSDSEPTGSVSNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSS 481
Query: 109 SLAGSFTSS 117
S TSS
Sbjct: 482 GGESSETSS 490
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 40.8 bits (94), Expect = 2e-04
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 16 VLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESS 75
+LR++ + F + ++S E S R RS R S +S+ SS SS
Sbjct: 405 MLRQIMTGFGELSYFMYSDSDSEPTG-SVSNRNMERAESRSGRGGS-GGGSSSGSSSSSS 462
Query: 76 SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTS 116
S+++SSS S S S S S G +S++ SDL S GS +S
Sbjct: 463 SSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSS 503
Score = 30.0 bits (66), Expect = 0.41
Identities = 27/69 (39%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 56 SARDSSITSSTSTAS-------SDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLML 108
S DS T S S + S S SSSG S S SSS S S S+S S S
Sbjct: 422 SDSDSEPTGSVSNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSS 481
Query: 109 SLAGSFTSS 117
S TSS
Sbjct: 482 GGESSETSS 490
>gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 40.8 bits (94), Expect = 2e-04
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 61 SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLS-----LAGSFT 115
S + S+S++ S S S++ SSS P P PSFS S+S SF LL+L L SF+
Sbjct: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
Query: 116 SS 117
SS
Sbjct: 235 SS 236
>gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
sapiens]
Length = 257
Score = 40.8 bits (94), Expect = 2e-04
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 61 SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLS-----LAGSFT 115
S + S+S++ S S S++ SSS P P PSFS S+S SF LL+L L SF+
Sbjct: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234
Query: 116 SS 117
SS
Sbjct: 235 SS 236
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 40.4 bits (93), Expect = 3e-04
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 8/59 (13%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS--------GSASDSFSDLL 106
+A SS +SS+S++SS S+S+++SSS SP P+S P+ S G + +FSD+L
Sbjct: 82 TAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGVPAAAFSDVL 140
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 39 KAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSA 98
+A L S+ P +A + + T++ S++SS SSS+++SSS S S SSS S ++
Sbjct: 57 EALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPAS 116
Query: 99 SDSFSDLLMLSLAG 112
+ S +L L G
Sbjct: 117 PPASSPPRVLELPG 130
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 35 FSLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSF 94
F ++ L +S+ L+ SA ++ A + +++AA+SSS S S SSS S
Sbjct: 41 FPAHRSVLAASSPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSS 100
Query: 95 SGSASDSFS 103
+ S+S S S
Sbjct: 101 ASSSSSSSS 109
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 40.4 bits (93), Expect = 3e-04
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 8/59 (13%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS--------GSASDSFSDLL 106
+A SS +SS+S++SS S+S+++SSS SP P+S P+ S G + +FSD+L
Sbjct: 82 TAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGVPAAAFSDVL 140
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 39 KAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSA 98
+A L S+ P +A + + T++ S++SS SSS+++SSS S S SSS S ++
Sbjct: 57 EALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPAS 116
Query: 99 SDSFSDLLMLSLAG 112
+ S +L L G
Sbjct: 117 PPASSPPRVLELPG 130
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 35 FSLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSF 94
F ++ L +S+ L+ SA ++ A + +++AA+SSS S S SSS S
Sbjct: 41 FPAHRSVLAASSPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSS 100
Query: 95 SGSASDSFS 103
+ S+S S S
Sbjct: 101 ASSSSSSSS 109
>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
Length = 170
Score = 39.7 bits (91), Expect = 5e-04
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
S+ + S T +S++SS +SS +SSS S S SSS S S +++DS SD
Sbjct: 112 SSSEDSDTDESSSSSSSSASSTTSSSSSDSDSDSSSSSSSSTSTDSSSD 160
Score = 38.9 bits (89), Expect = 9e-04
Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 56 SARDSSITSS-TSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSF 114
SA DSS S TST+SS E S SSS S S SS+ S S S SDS S S +
Sbjct: 97 SASDSSSESEETSTSSSSEDSDTDESSSSSSSSASSTTSSSSSDSDSDSSSSSSSSTSTD 156
Query: 115 TSS 117
+SS
Sbjct: 157 SSS 159
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 36 SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS 95
S+ + ++ +++ + + S+ SS SS S +SS+ ++ +SSS S + SS S S
Sbjct: 68 SIGETNVERKAKKKRSKSVTSSSSSSSDSSASDSSSESEETSTSSSSEDSDTDESSSSSS 127
Query: 96 GSASDSFSDLLMLSLAGSFTSS 117
SAS + S S + S +SS
Sbjct: 128 SSASSTTSSSSSDSDSDSSSSS 149
Score = 36.2 bits (82), Expect = 0.006
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASD 100
S D S +SS+S+ASS SSS++ S S S S SSS S S+ D
Sbjct: 117 SDTDESSSSSSSSASSTTSSSSSDSDSDSSSSSSSSTSTDSSSDD 161
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
S+ SS TSS+S+ S +SSS+++SS+ S P
Sbjct: 127 SSSASSTTSSSSSDSDSDSSSSSSSSTSTDSSSDDEP 163
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 40 AFLKSSTRRRPLRLI--RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGS 97
A LK + + + RL+ +S ++++ S +S+++SSS S S SSS S S
Sbjct: 50 AELKKALKEKENRLLLQQSIGETNVERKAKKKRSKSVTSSSSSSSDSSASDSSSESEETS 109
Query: 98 ASDSFSD 104
S S D
Sbjct: 110 TSSSSED 116
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 9e-04
Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
RS+ SS SSTST SS SSS++ASS SG S + SS S S S S S
Sbjct: 78 RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
Score = 36.6 bits (83), Expect = 0.004
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 36 SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS 95
S EK + TR+R RSA SS +SST + SS SSS +++S+G S SSS + S
Sbjct: 52 SSEKDRGRDKTRKR-----RSA--SSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 96 GSASDSFS 103
S S S S
Sbjct: 105 RSGSSSTS 112
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 44 SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
SSTR R S +S T S+S +SS +SS + SSS S SSS S S S S
Sbjct: 73 SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 63 TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
T +ASS SS S++ SSSG S S SS S S++ S S S + S +SS
Sbjct: 62 TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 9e-04
Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
RS+ SS SSTST SS SSS++ASS SG S + SS S S S S S
Sbjct: 78 RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
Score = 36.6 bits (83), Expect = 0.004
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 36 SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS 95
S EK + TR+R RSA SS +SST + SS SSS +++S+G S SSS + S
Sbjct: 52 SSEKDRGRDKTRKR-----RSA--SSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 96 GSASDSFS 103
S S S S
Sbjct: 105 RSGSSSTS 112
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 44 SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
SSTR R S +S T S+S +SS +SS + SSS S SSS S S S S
Sbjct: 73 SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 63 TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
T +ASS SS S++ SSSG S S SS S S++ S S S + S +SS
Sbjct: 62 TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 9e-04
Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
RS+ SS SSTST SS SSS++ASS SG S + SS S S S S S
Sbjct: 78 RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
Score = 35.8 bits (81), Expect = 0.007
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 36 SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDE---SSSAAASSSGRSPSPSSSP 92
S EK + TR+R S+ S +SSTS++ S SSS ++SSS S S SSS
Sbjct: 52 SSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSST 111
Query: 93 SFSGSASDS 101
S S S+S S
Sbjct: 112 SRSSSSSSS 120
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 44 SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
SSTR R S +S T S+S +SS +SS + SSS S SSS S S S S
Sbjct: 73 SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Score = 30.0 bits (66), Expect = 0.41
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 36 SLEKAFLKSST---RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
S +K K S+ R R R + S +S+ S +SS SS ++ S+ S S SSS
Sbjct: 43 SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSA 102
Query: 93 SF-SGSASDSFS 103
S SGS+S S S
Sbjct: 103 SSRSGSSSTSRS 114
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 63 TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
T +ASS SS S++ SSSG S S SS S S++ S S S + S +SS
Sbjct: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 9e-04
Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
RS+ SS SSTST SS SSS++ASS SG S + SS S S S S S
Sbjct: 78 RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
Score = 35.8 bits (81), Expect = 0.007
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 36 SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDE---SSSAAASSSGRSPSPSSSP 92
S EK + TR+R S+ S +SSTS++ S SSS ++SSS S S SSS
Sbjct: 52 SSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSST 111
Query: 93 SFSGSASDS 101
S S S+S S
Sbjct: 112 SRSSSSSSS 120
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 44 SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
SSTR R S +S T S+S +SS +SS + SSS S SSS S S S S
Sbjct: 73 SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Score = 30.0 bits (66), Expect = 0.41
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 36 SLEKAFLKSST---RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
S +K K S+ R R R + S +S+ S +SS SS ++ S+ S S SSS
Sbjct: 43 SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSA 102
Query: 93 SF-SGSASDSFS 103
S SGS+S S S
Sbjct: 103 SSRSGSSSTSRS 114
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 63 TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
T +ASS SS S++ SSSG S S SS S S++ S S S + S +SS
Sbjct: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 9e-04
Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
RS+ SS SSTST SS SSS++ASS SG S + SS S S S S S
Sbjct: 78 RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
Score = 35.8 bits (81), Expect = 0.007
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 36 SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDE---SSSAAASSSGRSPSPSSSP 92
S EK + TR+R S+ S +SSTS++ S SSS ++SSS S S SSS
Sbjct: 52 SSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSST 111
Query: 93 SFSGSASDS 101
S S S+S S
Sbjct: 112 SRSSSSSSS 120
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 44 SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
SSTR R S +S T S+S +SS +SS + SSS S SSS S S S S
Sbjct: 73 SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Score = 30.0 bits (66), Expect = 0.41
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 36 SLEKAFLKSST---RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
S +K K S+ R R R + S +S+ S +SS SS ++ S+ S S SSS
Sbjct: 43 SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSA 102
Query: 93 SF-SGSASDSFS 103
S SGS+S S S
Sbjct: 103 SSRSGSSSTSRS 114
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 63 TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
T +ASS SS S++ SSSG S S SS S S++ S S S + S +SS
Sbjct: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 9e-04
Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
RS+ SS SSTST SS SSS++ASS SG S + SS S S S S S
Sbjct: 78 RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
Score = 35.8 bits (81), Expect = 0.007
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 36 SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDE---SSSAAASSSGRSPSPSSSP 92
S EK + TR+R S+ S +SSTS++ S SSS ++SSS S S SSS
Sbjct: 52 SSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSST 111
Query: 93 SFSGSASDS 101
S S S+S S
Sbjct: 112 SRSSSSSSS 120
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 44 SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
SSTR R S +S T S+S +SS +SS + SSS S SSS S S S S
Sbjct: 73 SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Score = 30.0 bits (66), Expect = 0.41
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 36 SLEKAFLKSST---RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
S +K K S+ R R R + S +S+ S +SS SS ++ S+ S S SSS
Sbjct: 43 SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSA 102
Query: 93 SF-SGSASDSFS 103
S SGS+S S S
Sbjct: 103 SSRSGSSSTSRS 114
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 63 TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
T +ASS SS S++ SSSG S S SS S S++ S S S + S +SS
Sbjct: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 9e-04
Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
RS+ SS SSTST SS SSS++ASS SG S + SS S S S S S
Sbjct: 78 RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
Score = 36.6 bits (83), Expect = 0.004
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 36 SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS 95
S EK + TR+R RSA SS +SST + SS SSS +++S+G S SSS + S
Sbjct: 52 SSEKDRGRDKTRKR-----RSA--SSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 96 GSASDSFS 103
S S S S
Sbjct: 105 RSGSSSTS 112
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 44 SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
SSTR R S +S T S+S +SS +SS + SSS S SSS S S S S
Sbjct: 73 SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 63 TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
T +ASS SS S++ SSSG S S SS S S++ S S S + S +SS
Sbjct: 62 TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 9e-04
Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
RS+ SS SSTST SS SSS++ASS SG S + SS S S S S S
Sbjct: 78 RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
Score = 36.6 bits (83), Expect = 0.004
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 36 SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS 95
S EK + TR+R RSA SS +SST + SS SSS +++S+G S SSS + S
Sbjct: 52 SSEKDRGRDKTRKR-----RSA--SSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 96 GSASDSFS 103
S S S S
Sbjct: 105 RSGSSSTS 112
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 44 SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
SSTR R S +S T S+S +SS +SS + SSS S SSS S S S S
Sbjct: 73 SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 63 TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
T +ASS SS S++ SSSG S S SS S S++ S S S + S +SS
Sbjct: 62 TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 38.5 bits (88), Expect = 0.001
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
S+R SS +SS+S + S SS+++SSS S S SSS S S S+S S S
Sbjct: 2144 SSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSS 2191
Score = 37.0 bits (84), Expect = 0.003
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
S+ DS S S+ SS SSS+++SS S S SSS S S +S S S S + S +
Sbjct: 2130 SSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSS 2189
Query: 116 SS 117
SS
Sbjct: 2190 SS 2191
Score = 35.8 bits (81), Expect = 0.007
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASD 100
S+ SS + S S +SS SSS +++SS S S SSS S S S+S+
Sbjct: 2150 SSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSE 2194
Score = 35.4 bits (80), Expect = 0.010
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 43 KSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
+SS R S+ S S +S++SS SSA++SSS + S SSS S S SDS
Sbjct: 2140 RSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDS 2198
Score = 35.4 bits (80), Expect = 0.010
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 60 SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
SS +SS S + S SSS+++S S S S SSS S S S+S S S+
Sbjct: 2150 SSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSE 2194
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSF 114
R + S +SS S + S+ SS ++ SSS S S S S S SGS+S S S S + S
Sbjct: 2122 RVHKRGSESSSDSDSDSERSSCSSRSSSS-SSSSSCSHSRSGSSSSSSSSCSSASSSSSS 2180
Query: 115 TSS 117
++S
Sbjct: 2181 STS 2183
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 37.0 bits (84), Expect = 0.003
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASSSGRSPSP 88
RS R SS +SS+S++SS SSS+++ S RSPSP
Sbjct: 1475 RSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPSP 1508
Score = 32.7 bits (73), Expect = 0.063
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 64 SSTSTASSDESSSAAASSSGRSPSPSSSP 92
SS+S++SS SSS+++SSS RS S S SP
Sbjct: 1480 SSSSSSSSSSSSSSSSSSSSRSRSRSPSP 1508
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
R S++S ++ S SSS+++SSS RS S S SP
Sbjct: 1423 RGRNSRSVSSGSNRTSEASSSSSSSSSSSRSRSRSLSP 1460
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 58 RDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
R SS +SS + SSS+++SSS S S SSS S S S S
Sbjct: 1466 RRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPS 1507
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 55 RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPS 93
RS+ SS S ++SS SSS+++SSS S S S S S
Sbjct: 1467 RSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRS 1505
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 66 TSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
+S +SS S ++SSS S S SSS S S S S S S
Sbjct: 1468 SSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRS 1505
Score = 27.3 bits (59), Expect = 2.6
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 44 SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
SS+ R R + SS S++ S+++SSS S S SSS S S S S S
Sbjct: 1448 SSSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRS 1505
Score = 27.3 bits (59), Expect = 2.6
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 65 STSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
S+S S SSS+++SSS S S SSS S S S S S
Sbjct: 1471 SSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPS 1507
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 35.0 bits (79), Expect = 0.013
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 60 SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSF 94
SS +SS+S++SS SSS+++SS + P P P+F
Sbjct: 96 SSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAF 130
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 63 TSSTSTASSDESSSAAASSSGRSPSPSSSP 92
+SS+S++SS SSS+++SSS S S + P
Sbjct: 93 SSSSSSSSSSSSSSSSSSSSSSSSSQAKKP 122
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 65 STSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
ST ++ SS+++SSS S S SSS S S S+S +
Sbjct: 83 STFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQA 119
Score = 27.3 bits (59), Expect = 2.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 60 SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASD 100
S+ SS SSS+++SSS S S SSS S D
Sbjct: 83 STFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPD 123
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 35.0 bits (79), Expect = 0.013
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 60 SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSF 94
SS +SS+S++SS SSS+++SS + P P P+F
Sbjct: 96 SSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAF 130
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 63 TSSTSTASSDESSSAAASSSGRSPSPSSSP 92
+SS+S++SS SSS+++SSS S S + P
Sbjct: 93 SSSSSSSSSSSSSSSSSSSSSSSSSQAKKP 122
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 65 STSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
ST ++ SS+++SSS S S SSS S S S+S +
Sbjct: 83 STFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQA 119
Score = 27.3 bits (59), Expect = 2.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 60 SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASD 100
S+ SS SSS+++SSS S S SSS S D
Sbjct: 83 STFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPD 123
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 34.7 bits (78), Expect = 0.017
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 28 RTLVFSIFSLEK-AFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSP 86
RT S FS +K A KSSTR ++ R++ ++S++ +S + S+ SP
Sbjct: 317 RTSSSSSFSDKKPAKDKSSTRGEKVKAESEPREAKKALEVEESNSEDEASFKSESAQSSP 376
Query: 87 SPSSSPSFSGSASD 100
S SSS S S S SD
Sbjct: 377 SNSSSSSDSSSDSD 390
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 69 ASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
+ D+SSS ++ +P S SFS S SD+ +D
Sbjct: 414 SDEDDSSSGEEAAGKTNPGRDSRLSFSDSESDNSAD 449
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSS--GRSPSPSSSPSFS 95
S R ++ S +A + SS+ S S G SP SSS SFS
Sbjct: 284 SKRPATADSPKPSAKKQKKSSSKGSRSAPGTSPRTSSSSSFS 325
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 34.7 bits (78), Expect = 0.017
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 48 RRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLM 107
RRP R + +R S SS S S + ++ AS RSPS S S S S S+SDS S
Sbjct: 231 RRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRS-SSSDSISSSSS 289
Query: 108 LSLAGSFTSS 117
S S +SS
Sbjct: 290 TSSDSSDSSS 299
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 55 RSARDSSITSSTSTA--SSDESSSAAASSSGRSPSPSSSPS 93
RS+ SI+SS+ST+ SSD SSS++ S RS ++ P+
Sbjct: 277 RSSSSDSISSSSSTSSDSSDSSSSSSDDSPARSVQSAAVPA 317
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/66 (31%), Positives = 29/66 (43%)
Query: 38 EKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGS 97
E+ + S +R R+ + S S + S S + S S S S SSS S S
Sbjct: 234 ERNYQHSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSSTSSD 293
Query: 98 ASDSFS 103
+SDS S
Sbjct: 294 SSDSSS 299
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 45 STRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
S + P RL A + + S S + S SSS + SSS S S SS S S S+ DS
Sbjct: 250 SRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSS-STSSDSSDSSSSSSDDS 305
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 45 STRRRPLRLIRSARDSSITSSTS-TASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
S +R + R R S + S S ++SSD SS++++SS S S SSS S + S
Sbjct: 254 SPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSSTSSDSSDSSSSSSDDSPARS 309
>gi|4505379 nuclear factor erythroid 2-like 1 [Homo sapiens]
Length = 772
Score = 34.7 bits (78), Expect = 0.017
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 59 DSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
DS ++ +S + S SSS +SSS S S SSS S S SAS SFS+
Sbjct: 476 DSGLSLDSSHSPSSLSSSEGSSSSSSSSSSSSS-SASSSASSSFSE 520
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 56 SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS-----GSASDS 101
S S SS S++ SSS+++SSS S S S+S SFS G +SDS
Sbjct: 480 SLDSSHSPSSLSSSEGSSSSSSSSSSSSSSASSSASSSFSEEGAVGYSSDS 530
Score = 30.4 bits (67), Expect = 0.31
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 63 TSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
+ S + S S S+ +SS G S S SSS S S SAS S S
Sbjct: 475 SDSGLSLDSSHSPSSLSSSEGSSSSSSSSSSSSSSASSSAS 515
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 72 DESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
+E S + S S SPSS S GS+S S S S A S SS
Sbjct: 471 EEFDSDSGLSLDSSHSPSSLSSSEGSSSSSSSSSSSSSSASSSASS 516
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 34.7 bits (78), Expect = 0.017
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 50 PLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSF-SDLLML 108
PL S +++SS+S++SS S S+++SSS SP P S+ S S+ D+ + L M+
Sbjct: 838 PLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEASLPMI 897
Query: 109 S 109
S
Sbjct: 898 S 898
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 67 STASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSL 110
S++SS SSS++ SSS S SPS P + S+ S D L SL
Sbjct: 851 SSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEASL 894
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 42 LKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASS-----SGRSPSPSSSPSFSG 96
L ++T + PL ++ +++ S S E +AAS S S S SSS SFS
Sbjct: 810 LSNATAQSPLPIL----SPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSS 865
Query: 97 SASDSFSDLLMLSLAGSFTSS 117
S+S S LS S SS
Sbjct: 866 SSSSSSPSPPPLSAISSVVSS 886
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.122 0.315
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,374,495
Number of Sequences: 37866
Number of extensions: 126078
Number of successful extensions: 5578
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 2922
Number of HSP's gapped (non-prelim): 1912
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.