Guide to the Human Genome
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Name: LOC440335 Sequence: fasta or formatted (88aa) NCBI GI: 239756470
Description:

PREDICTED: hypothetical protein isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {83aa} PREDICTED: hypothetical protein isoform 1
alt prot {135aa} PREDICTED: hypothetical protein
alt mRNA {88aa} PREDICTED: hypothetical protein
alt prot {135aa} PREDICTED: hypothetical protein
alt mRNA {88aa} PREDICTED: hypothetical protein
alt prot {135aa} PREDICTED: hypothetical protein isoform 3
alt prot {83aa} PREDICTED: hypothetical protein isoform 2
alt prot {83aa} PREDICTED: hypothetical protein isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          5           1
 C cysteine            4.5          4           4
 D aspartate           2.3          2           1
 E glutamate           8.0          7           2
 F phenylalanine       5.7          5           2
 G glycine             4.5          4           1
 H histidine           2.3          2           1
 I isoleucine          1.1          1           1
 K lysine              4.5          4           1
 L leucine            13.6         12           6
 M methionine          2.3          2           1
 N asparagine          1.1          1           1
 P proline             6.8          6           1
 Q glutamine           3.4          3           1
 R arginine            5.7          5           2
 S serine              8.0          7           2
 T threonine           6.8          6           1
 V valine             11.4         10           2
 W tryptophan          2.3          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 2 
LOC440335             1.000   PREDICTED: hypothetical protein 
LOC440335             1.000   PREDICTED: hypothetical protein 
LOC440335             0.885   PREDICTED: hypothetical protein isoform 1 
LOC440335             0.885   PREDICTED: hypothetical protein isoform 4 
LOC440335             0.885   PREDICTED: hypothetical protein isoform 2 
LOC440335             0.860   PREDICTED: hypothetical protein isoform 3 
LOC440335             0.860   PREDICTED: hypothetical protein 
LOC440335             0.860   PREDICTED: hypothetical protein 
KIAA0040              0.070   hypothetical protein LOC9674 
KIAA0040              0.070   hypothetical protein LOC9674 
KIAA0040              0.070   hypothetical protein LOC9674 
KIAA0040              0.070   hypothetical protein LOC9674 
LOC643008             0.051   hypothetical protein LOC643008 
ILDR1                 0.032   immunoglobulin-like domain containing receptor 1 [Ho...
SEL1L                 0.025   sel-1 suppressor of lin-12-like 
LOC100287820          0.019   PREDICTED: hypothetical protein XP_002343297 
KIAA0319L             0.019   dyslexia susceptibility 2-like 
LOC100130933          0.013   hypothetical protein LOC100130933 
SLC12A4               0.013   solute carrier family 12, member 4 isoform e 
SLC12A4               0.013   solute carrier family 12, member 4 isoform d 
SLC12A4               0.013   solute carrier family 12, member 4 isoform c 
SLC12A4               0.013   solute carrier family 12, member 4 isoform b 
SLC12A4               0.013   solute carrier family 12, member 4 isoform a 
GPA33                 0.013   transmembrane glycoprotein A33 precursor 
SERINC5               0.013   developmentally regulated protein TPO1 
WDFY4                 0.013   WDFY family member 4 
SGCE                  0.013   sarcoglycan, epsilon isoform 1 
SGCE                  0.013   sarcoglycan, epsilon isoform 2 
GPR98                 0.013   G protein-coupled receptor 98 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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