Guide to the Human Genome
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Name: LOC440335 Sequence: fasta or formatted (83aa) NCBI GI: 169209671
Description:

PREDICTED: hypothetical protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {135aa} PREDICTED: hypothetical protein
alt prot {88aa} PREDICTED: hypothetical protein
alt prot {135aa} PREDICTED: hypothetical protein
alt prot {88aa} PREDICTED: hypothetical protein
alt prot {135aa} PREDICTED: hypothetical protein isoform 3
alt prot {88aa} PREDICTED: hypothetical protein isoform 2
alt mRNA {83aa} PREDICTED: hypothetical protein isoform 2
alt mRNA {83aa} PREDICTED: hypothetical protein isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0          5           1
 C cysteine            4.8          4           4
 D aspartate           2.4          2           1
 E glutamate           8.4          7           2
 F phenylalanine       6.0          5           2
 G glycine             4.8          4           1
 H histidine           2.4          2           1
 I isoleucine          1.2          1           1
 K lysine              3.6          3           1
 L leucine            14.5         12           6
 M methionine          2.4          2           1
 N asparagine          1.2          1           1
 P proline             6.0          5           1
 Q glutamine           3.6          3           1
 R arginine            6.0          5           2
 S serine              7.2          6           2
 T threonine           7.2          6           1
 V valine             10.8          9           2
 W tryptophan          1.2          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 1 
LOC440335             1.000   PREDICTED: hypothetical protein isoform 4 
LOC440335             1.000   PREDICTED: hypothetical protein isoform 2 
LOC440335             0.952   PREDICTED: hypothetical protein isoform 2 
LOC440335             0.952   PREDICTED: hypothetical protein 
LOC440335             0.952   PREDICTED: hypothetical protein 
LOC440335             0.829   PREDICTED: hypothetical protein isoform 3 
LOC440335             0.829   PREDICTED: hypothetical protein 
LOC440335             0.829   PREDICTED: hypothetical protein 
KIAA0040              0.068   hypothetical protein LOC9674 
KIAA0040              0.068   hypothetical protein LOC9674 
KIAA0040              0.068   hypothetical protein LOC9674 
KIAA0040              0.068   hypothetical protein LOC9674 
LOC643008             0.055   hypothetical protein LOC643008 
ILDR1                 0.034   immunoglobulin-like domain containing receptor 1 [Ho...
LOC100130933          0.027   hypothetical protein LOC100130933 
SEL1L                 0.021   sel-1 suppressor of lin-12-like 
PTTG1IP               0.021   pituitary tumor-transforming gene 1 protein-interacti...
FAM171A1              0.021   hypothetical protein LOC221061 
GPA33                 0.021   transmembrane glycoprotein A33 precursor 
BTC                   0.021   betacellulin 
SLC12A4               0.014   solute carrier family 12, member 4 isoform e 
SLC12A4               0.014   solute carrier family 12, member 4 isoform d 
SLC12A4               0.014   solute carrier family 12, member 4 isoform c 
SLC12A4               0.014   solute carrier family 12, member 4 isoform b 
SLC12A4               0.014   solute carrier family 12, member 4 isoform a 
KIAA0319L             0.014   dyslexia susceptibility 2-like 
WDFY4                 0.014   WDFY family member 4 
SYT8                  0.014   synaptotagmin VIII 
SERINC5               0.014   developmentally regulated protein TPO1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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