Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239756144
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756144 PREDICTED: hypothetical protein [Homo sapiens]
(156 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756144 PREDICTED: hypothetical protein [Homo sapiens] 311 1e-85
gi|239745007 PREDICTED: hypothetical protein XP_002343295 [Homo ... 310 4e-85
gi|239750699 PREDICTED: hypothetical protein XP_002347487 [Homo ... 305 1e-83
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 36 0.015
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 36 0.015
gi|239756183 PREDICTED: hypothetical protein [Homo sapiens] 35 0.034
gi|239750714 PREDICTED: hypothetical protein [Homo sapiens] 35 0.034
gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo ... 35 0.034
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 34 0.044
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ... 33 0.098
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 32 0.17
gi|92091575 coiled-coil domain containing 57 [Homo sapiens] 32 0.22
gi|47419907 T-box 3 protein isoform 2 [Homo sapiens] 32 0.29
gi|47419905 T-box 3 protein isoform 1 [Homo sapiens] 32 0.29
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens] 32 0.29
gi|169210192 PREDICTED: hypothetical protein [Homo sapiens] 31 0.37
gi|113425957 PREDICTED: hypothetical protein [Homo sapiens] 31 0.37
gi|61676082 shadow of prion protein [Homo sapiens] 31 0.37
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 31 0.49
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 31 0.49
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 31 0.49
gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 31 0.49
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] 31 0.49
gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens] 31 0.49
gi|157694497 zinc finger and BTB domain containing 10 isoform b ... 31 0.49
gi|157694499 zinc finger and BTB domain containing 10 isoform a ... 31 0.49
gi|239755684 PREDICTED: hypothetical protein [Homo sapiens] 30 0.64
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 30 0.64
gi|239750147 PREDICTED: hypothetical protein [Homo sapiens] 30 0.64
gi|239744457 PREDICTED: hypothetical protein [Homo sapiens] 30 0.64
>gi|239756144 PREDICTED: hypothetical protein [Homo sapiens]
Length = 156
Score = 311 bits (798), Expect = 1e-85
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MAHVPLLRGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQG 60
MAHVPLLRGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQG
Sbjct: 1 MAHVPLLRGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQG 60
Query: 61 PVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRALRAQRLG 120
PVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRALRAQRLG
Sbjct: 61 PVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRALRAQRLG 120
Query: 121 LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGPC 156
LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGPC
Sbjct: 121 LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGPC 156
>gi|239745007 PREDICTED: hypothetical protein XP_002343295 [Homo
sapiens]
Length = 156
Score = 310 bits (793), Expect = 4e-85
Identities = 155/156 (99%), Positives = 155/156 (99%)
Query: 1 MAHVPLLRGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQG 60
MAHVPLLRGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAA TTVQG
Sbjct: 1 MAHVPLLRGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAAATTVQG 60
Query: 61 PVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRALRAQRLG 120
PVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRALRAQRLG
Sbjct: 61 PVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRALRAQRLG 120
Query: 121 LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGPC 156
LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGPC
Sbjct: 121 LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGPC 156
>gi|239750699 PREDICTED: hypothetical protein XP_002347487 [Homo
sapiens]
Length = 155
Score = 305 bits (781), Expect = 1e-83
Identities = 155/156 (99%), Positives = 155/156 (99%), Gaps = 1/156 (0%)
Query: 1 MAHVPLLRGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQG 60
MAHVPLLRGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATT VQG
Sbjct: 1 MAHVPLLRGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATT-VQG 59
Query: 61 PVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRALRAQRLG 120
PVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRALRAQRLG
Sbjct: 60 PVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRALRAQRLG 119
Query: 121 LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGPC 156
LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGPC
Sbjct: 120 LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGPC 155
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 35.8 bits (81), Expect = 0.015
Identities = 52/150 (34%), Positives = 61/150 (40%), Gaps = 21/150 (14%)
Query: 3 HVPLLRGRRGRE---CAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQ 59
H P RGRR R A GGA A GRR G Q VG A AA
Sbjct: 935 HRPGARGRRSRRRAAVALAGGAHPARAALGRRRG-GGQAVG--------ARAAHQARLAG 985
Query: 60 GPVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPV-RLRPLHRELLRALRAQR 118
G VD+V V AA+ D VR R R+L + E+ + RL L L+ LR R
Sbjct: 986 GQVDQVVV----AARAGDADGVRGRRPRRLALTARPELEELLERLHGLQDGLVDVLRHHR 1041
Query: 119 LGLGVRPRRQRPRLLLGLQVRHADEASPVR 148
+ VR Q G + H DE VR
Sbjct: 1042 V---VRLHPQLAGACDG-RAAHLDEEEAVR 1067
Score = 29.6 bits (65), Expect = 1.1
Identities = 38/117 (32%), Positives = 47/117 (40%), Gaps = 22/117 (18%)
Query: 4 VPLLRGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVD 63
V ++ GRRGR A GG R GG GRR Q R A + VD
Sbjct: 355 VTIVPGRRGR---AAGGQER--GGRGRR-----------RQQGRRGRRQAGPGLAKVDVD 398
Query: 64 KVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRALRAQRLG 120
+ ALGL Q V + A + Q +A H R L +E LRA A+ G
Sbjct: 399 VLAGALGLRWQWVLVHAGQAGQPLQGQARGPH------RPAALAQEALRAAAARPHG 449
Score = 28.9 bits (63), Expect = 1.8
Identities = 32/84 (38%), Positives = 35/84 (41%), Gaps = 25/84 (29%)
Query: 2 AHVPL-----LRGRRG-------RECAAR--GGA-----RRAPGGEGRRPGRASQEV--- 39
AHVP L GR G REC AR GG RR GG G G Q++
Sbjct: 574 AHVPTVLGGALGGRAGLVAAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPGLQDLLGG 633
Query: 40 ---GLPHHQAGRAPAAAATTTVQG 60
G H APAAAA T +G
Sbjct: 634 GHAGGAHGHVVVAPAAAAPTAREG 657
Score = 27.7 bits (60), Expect = 4.1
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 8 RGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPV-DKVE 66
RGR G G R PG G+ G +Q + R PA A T QGPV V
Sbjct: 724 RGRGGL------GHRPLPGWRGQGVGPLAQPSVQVLGRVPRDPAVGAATVAQGPVHGHVP 777
Query: 67 VALGLAA 73
V L AA
Sbjct: 778 VELTAAA 784
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 35.8 bits (81), Expect = 0.015
Identities = 52/150 (34%), Positives = 61/150 (40%), Gaps = 21/150 (14%)
Query: 3 HVPLLRGRRGRE---CAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQ 59
H P RGRR R A GGA A GRR G Q VG A AA
Sbjct: 935 HRPGARGRRSRRRAAVALAGGAHPARAALGRRRG-GGQAVG--------ARAAHQARLAG 985
Query: 60 GPVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPV-RLRPLHRELLRALRAQR 118
G VD+V V AA+ D VR R R+L + E+ + RL L L+ LR R
Sbjct: 986 GQVDQVVV----AARAGDADGVRGRRPRRLALTARPELEELLERLHGLQDGLVDVLRHHR 1041
Query: 119 LGLGVRPRRQRPRLLLGLQVRHADEASPVR 148
+ VR Q G + H DE VR
Sbjct: 1042 V---VRLHPQLAGACDG-RAAHLDEEEAVR 1067
Score = 29.6 bits (65), Expect = 1.1
Identities = 38/117 (32%), Positives = 47/117 (40%), Gaps = 22/117 (18%)
Query: 4 VPLLRGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVD 63
V ++ GRRGR A GG R GG GRR Q R A + VD
Sbjct: 355 VTIVPGRRGR---AAGGQER--GGRGRR-----------RQQGRRGRRQAGPGLAKVDVD 398
Query: 64 KVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRALRAQRLG 120
+ ALGL Q V + A + Q +A H R L +E LRA A+ G
Sbjct: 399 VLAGALGLRWQWVLVHAGQAGQPLQGQARGPH------RPAALAQEALRAAAARPHG 449
Score = 28.9 bits (63), Expect = 1.8
Identities = 32/84 (38%), Positives = 35/84 (41%), Gaps = 25/84 (29%)
Query: 2 AHVPL-----LRGRRG-------RECAAR--GGA-----RRAPGGEGRRPGRASQEV--- 39
AHVP L GR G REC AR GG RR GG G G Q++
Sbjct: 574 AHVPTVLGGALGGRAGLVAAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPGLQDLLGG 633
Query: 40 ---GLPHHQAGRAPAAAATTTVQG 60
G H APAAAA T +G
Sbjct: 634 GHAGGAHGHVVVAPAAAAPTAREG 657
Score = 27.7 bits (60), Expect = 4.1
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 8 RGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPV-DKVE 66
RGR G G R PG G+ G +Q + R PA A T QGPV V
Sbjct: 724 RGRGGL------GHRPLPGWRGQGVGPLAQPSVQVLGRVPRDPAVGAATVAQGPVHGHVP 777
Query: 67 VALGLAA 73
V L AA
Sbjct: 778 VELTAAA 784
>gi|239756183 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 34.7 bits (78), Expect = 0.034
Identities = 44/155 (28%), Positives = 58/155 (37%), Gaps = 19/155 (12%)
Query: 9 GRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVDKVEVA 68
GRR C A P G R PG A V + +A P +AT E
Sbjct: 42 GRRAGLCGASAALGTRPAGRLRPPGSAHPGV-ICSCRAPPIPGTSATP---------EDL 91
Query: 69 LGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELL--------RALRAQRLG 120
G A ++ L R E +HQH +R+R LL R R +RL
Sbjct: 92 AGPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQRRLQRGRRLA 151
Query: 121 LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGP 155
++ +R + +L LQ RH P RS R P
Sbjct: 152 AVLQQQRHQLAQVL-LQHRHVAPPRPAGRSRRSHP 185
>gi|239750714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 34.7 bits (78), Expect = 0.034
Identities = 44/155 (28%), Positives = 58/155 (37%), Gaps = 19/155 (12%)
Query: 9 GRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVDKVEVA 68
GRR C A P G R PG A V + +A P +AT E
Sbjct: 42 GRRAGLCGASAALGTRPAGRLRPPGSAHPGV-ICSCRAPPIPGTSATP---------EDL 91
Query: 69 LGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELL--------RALRAQRLG 120
G A ++ L R E +HQH +R+R LL R R +RL
Sbjct: 92 AGPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQRRLQRGRRLA 151
Query: 121 LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGP 155
++ +R + +L LQ RH P RS R P
Sbjct: 152 AVLQQQRHQLAQVL-LQHRHVAPPRPAGRSRRSHP 185
>gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo
sapiens]
Length = 229
Score = 34.7 bits (78), Expect = 0.034
Identities = 44/155 (28%), Positives = 58/155 (37%), Gaps = 19/155 (12%)
Query: 9 GRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVDKVEVA 68
GRR C A P G R PG A V + +A P +AT E
Sbjct: 42 GRRAGLCGASAALGTRPAGRLRPPGSAHPGV-ICSCRAPPIPGTSATP---------EDL 91
Query: 69 LGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELL--------RALRAQRLG 120
G A ++ L R E +HQH +R+R LL R R +RL
Sbjct: 92 AGPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQRRLQRGRRLA 151
Query: 121 LGVRPRRQRPRLLLGLQVRHADEASPVRRSGRPGP 155
++ +R + +L LQ RH P RS R P
Sbjct: 152 AVLQQQRHQLAQVL-LQHRHVAPPRPAGRSRRSHP 185
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 34.3 bits (77), Expect = 0.044
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 7 LRGRRGRECAARG--GARRAPGGEGRRPGRASQEVGLP 42
LRGR GR A G GA +A GG GR P R + G+P
Sbjct: 469 LRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMP 506
>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
sapiens]
Length = 239
Score = 33.1 bits (74), Expect = 0.098
Identities = 34/122 (27%), Positives = 42/122 (34%), Gaps = 6/122 (4%)
Query: 8 RGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVDKVEV 67
R R+ + GG PG GR GR+ VG GR P+ +
Sbjct: 101 RPRQASQTRGGGGGPSLPGPAGRPSGRSRSRVG----ARGRLPSGGSHLPQPPRSLAAAS 156
Query: 68 ALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRALRAQRLGLGVRPRR 127
A A+++ L R A V P RP LL LR LGV RR
Sbjct: 157 AWQAVARELGLSGPRPTEAPPFPAPRVRAPPPP--QRPAQLRLLAGLRPVVTSLGVTRRR 214
Query: 128 QR 129
R
Sbjct: 215 GR 216
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 32.3 bits (72), Expect = 0.17
Identities = 25/52 (48%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 7 LRGRR----GRECA-ARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAA 53
LR RR G CA ARG RRAPG GR PG + G APAAA
Sbjct: 97 LRRRRAKVGGWGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAA 148
>gi|92091575 coiled-coil domain containing 57 [Homo sapiens]
Length = 915
Score = 32.0 bits (71), Expect = 0.22
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 24/156 (15%)
Query: 24 APGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVDKVEVALGLAAQQVA------ 77
+P E + R S E QAG+A + G V V+ GLA +++
Sbjct: 611 SPHAESQPSVRTSTETTGGSAQAGQAGGSVQAGQAGGSVQAGPVSSGLALRKLGDRVQLL 670
Query: 78 ---LDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRALR-----------AQRLGLGV 123
+ +RQ+V+R+ Q E P + +H E+L + AQ G
Sbjct: 671 NLLVTRLRQKVLREPLEPAALQRELPREVDQVHLEVLELRKQVAELGKHLRIAQHGGAEP 730
Query: 124 RPRRQRP---RLLLGLQ-VRHADEASPVRRSGRPGP 155
R+Q P + LG + + A++ +P R G+ P
Sbjct: 731 SGRKQPPASDAVALGREDAKSAEDEAPSRHLGKHQP 766
>gi|47419907 T-box 3 protein isoform 2 [Homo sapiens]
Length = 743
Score = 31.6 bits (70), Expect = 0.29
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 22 RRAPGGEGRRPGRASQEVGLPHHQAGRAPA-----AAATTTVQGPVDKVEVALGLAAQQ 75
RR+P EG P + + LP +A AP AAA QGP+ + A GLA QQ
Sbjct: 454 RRSPVREGTAPAKVEEARALPGKEAF-APLTVQTDAAAAHLAQGPLPGLGFAPGLAGQQ 511
>gi|47419905 T-box 3 protein isoform 1 [Homo sapiens]
Length = 723
Score = 31.6 bits (70), Expect = 0.29
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 22 RRAPGGEGRRPGRASQEVGLPHHQAGRAPA-----AAATTTVQGPVDKVEVALGLAAQQ 75
RR+P EG P + + LP +A AP AAA QGP+ + A GLA QQ
Sbjct: 434 RRSPVREGTAPAKVEEARALPGKEAF-APLTVQTDAAAAHLAQGPLPGLGFAPGLAGQQ 491
>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
Length = 689
Score = 31.6 bits (70), Expect = 0.29
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 16 AARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGP 61
AA G R GG R PGR + G P GR AA T+ GP
Sbjct: 38 AASGELR---GGTERGPGRCAPSAGSPAAAVGRESPGAAATSSSGP 80
>gi|169210192 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 31.2 bits (69), Expect = 0.37
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 15 CAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGP 61
C +R G RRA GEG RPGRA + LP PA T T P
Sbjct: 113 CGSRLGRRRA--GEGPRPGRALPFLSLP---CQAVPAPTLTPTPPDP 154
>gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 31.2 bits (69), Expect = 0.37
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 15 CAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGP 61
C +R G RRA GEG RPGRA + LP PA T T P
Sbjct: 113 CGSRLGRRRA--GEGPRPGRALPFLSLP---CQAVPAPTLTPTPPDP 154
>gi|61676082 shadow of prion protein [Homo sapiens]
Length = 151
Score = 31.2 bits (69), Expect = 0.37
Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 9 GRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVDKVEVA 68
GR G +ARGG R G R R +Q G P A A AA G A
Sbjct: 27 GRGGARGSARGGVRGGARGASRVRVRPAQRYGAPGSSLRVAAAGAAAGAAAG------AA 80
Query: 69 LGLAA 73
GLAA
Sbjct: 81 AGLAA 85
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 30.8 bits (68), Expect = 0.49
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 8 RGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVDKVEV 67
RGR G E GG G PGR +AG A +V+GP + V
Sbjct: 426 RGREGEEGVRAGGGGTGEVRGGGSPGRQPVGRAAVTGEAGAGAAGRGAQSVRGPGVERRV 485
Query: 68 ALGLAAQQ----VALDAVRQRVVRQLEAA 92
A G AQQ V L +RV R AA
Sbjct: 486 AEG--AQQFGPRVGLRQHAERVERAQRAA 512
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 30.8 bits (68), Expect = 0.49
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 8 RGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVDKVEV 67
RGR G E GG G PGR +AG A +V+GP + V
Sbjct: 99 RGREGEEGVRAGGGGTGEVRGGGSPGRQPVGRAAVTGEAGAGAAGRGAQSVRGPGVERRV 158
Query: 68 ALGLAAQQ----VALDAVRQRVVRQLEAA 92
A G AQQ V L +RV R AA
Sbjct: 159 AEG--AQQFGPRVGLRQHAERVERAQRAA 185
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 30.8 bits (68), Expect = 0.49
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 8 RGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVDKVEV 67
RGR G E GG G PGR +AG A +V+GP + V
Sbjct: 99 RGREGEEGVRAGGGGTGEVRGGGSPGRQPVGRAAVTGEAGAGAAGRGAQSVRGPGVERRV 158
Query: 68 ALGLAAQQ----VALDAVRQRVVRQLEAA 92
A G AQQ V L +RV R AA
Sbjct: 159 AEG--AQQFGPRVGLRQHAERVERAQRAA 185
>gi|239508753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 30.8 bits (68), Expect = 0.49
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 8 RGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPVDKVEV 67
RGR G E GG G PGR +AG A +V+GP + V
Sbjct: 99 RGREGEEGVRAGGGGTGEVRGGGSPGRQPVGRAAVTGEAGAGAAGRGAQSVRGPGVERRV 158
Query: 68 ALGLAAQQ----VALDAVRQRVVRQLEAA 92
A G AQQ V L +RV R AA
Sbjct: 159 AEG--AQQFGPRVGLRQHAERVERAQRAA 185
>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
Length = 725
Score = 30.8 bits (68), Expect = 0.49
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 16 AARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPV---DKVEVALGLA 72
AA G+ + G G P A+ P +G AP+A ++++ PV +++AL +
Sbjct: 77 AAAAGSAPSQAGPGSAPSSAASGASSPAPASGPAPSAVSSSSPTPPVRLRKTLDLALSIL 136
Query: 73 AQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRAL 114
A A R V R P+ Q ++ + RAL
Sbjct: 137 ADCCTEGACRTEVRRLGGILPLVTILQCMKTDSIQNRTARAL 178
>gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]
Length = 935
Score = 30.8 bits (68), Expect = 0.49
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 16 AARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPAAAATTTVQGPV---DKVEVALGLA 72
AA G+ + G G P A+ P +G AP+A ++++ PV +++AL +
Sbjct: 77 AAAAGSAPSQAGPGSAPSSAASGASSPAPASGPAPSAVSSSSPTPPVRLRKTLDLALSIL 136
Query: 73 AQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRAL 114
A A R V R P+ Q ++ + RAL
Sbjct: 137 ADCCTEGACRTEVRRLGGILPLVTILQCMKTDSIQNRTARAL 178
>gi|157694497 zinc finger and BTB domain containing 10 isoform b
[Homo sapiens]
Length = 847
Score = 30.8 bits (68), Expect = 0.49
Identities = 19/47 (40%), Positives = 19/47 (40%)
Query: 5 PLLRGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPA 51
PLL R R A RGG G G GR V H GR PA
Sbjct: 113 PLLAERNRRTLAFRGGGGGGLGNNGSSRGRPETSVWPLRHFNGRGPA 159
>gi|157694499 zinc finger and BTB domain containing 10 isoform a
[Homo sapiens]
Length = 871
Score = 30.8 bits (68), Expect = 0.49
Identities = 19/47 (40%), Positives = 19/47 (40%)
Query: 5 PLLRGRRGRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRAPA 51
PLL R R A RGG G G GR V H GR PA
Sbjct: 113 PLLAERNRRTLAFRGGGGGGLGNNGSSRGRPETSVWPLRHFNGRGPA 159
>gi|239755684 PREDICTED: hypothetical protein [Homo sapiens]
Length = 415
Score = 30.4 bits (67), Expect = 0.64
Identities = 42/152 (27%), Positives = 54/152 (35%), Gaps = 20/152 (13%)
Query: 6 LLRGRR--GRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRA----------PAAA 53
+LRG+ G C A G RR+ G RR R S P H+ G PA
Sbjct: 221 VLRGQLSDGHGCGAPGSTRRS--GYSRR--RESCAAPSPSHRPGARLSLSLCLLPHPACL 276
Query: 54 ATTTVQGPVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRA 113
+ Q P D ++ L R +R L P + P R R L RA
Sbjct: 277 CVSVPQAPSDSAGLSRSLPPPPAGRGGAGTRELRFLRFHPARPCKSPGRARHSDSRLSRA 336
Query: 114 LRAQRLGLGVRPRRQRPRLLLGLQVRHADEAS 145
G G +R L L L+ A EA+
Sbjct: 337 ----PPGAGTTRGTKRFPLALPLRAALAAEAA 364
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 30.4 bits (67), Expect = 0.64
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 8 RGRRGRECAARGGARRAPGG-EGRRPGRASQEVGLPHHQAGRAPAAAATTTVQ----GPV 62
RG GR A GG GG G R GR E G P QA R +A + +
Sbjct: 165 RGGSGRSSAGGGGGGGGGGGGRGSRRGRGGGERGGPRAQAVRRRLSALRGRGRRRRLKRL 224
Query: 63 DKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQP 100
+ + G AA + A +VR+ E PV Q +P
Sbjct: 225 RRAQETSGAAALERACASVRE------ELLPVLQFSEP 256
>gi|239750147 PREDICTED: hypothetical protein [Homo sapiens]
Length = 415
Score = 30.4 bits (67), Expect = 0.64
Identities = 42/152 (27%), Positives = 54/152 (35%), Gaps = 20/152 (13%)
Query: 6 LLRGRR--GRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRA----------PAAA 53
+LRG+ G C A G RR+ G RR R S P H+ G PA
Sbjct: 221 VLRGQLSDGHGCGAPGSTRRS--GYSRR--RESCAAPSPSHRPGARLSLSLCLLPHPACL 276
Query: 54 ATTTVQGPVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRA 113
+ Q P D ++ L R +R L P + P R R L RA
Sbjct: 277 CVSVPQAPSDSAGLSRSLPPPPAGRGGAGTRELRFLRFHPARPCKSPGRARHSDSRLSRA 336
Query: 114 LRAQRLGLGVRPRRQRPRLLLGLQVRHADEAS 145
G G +R L L L+ A EA+
Sbjct: 337 ----PPGAGTTRGTKRFPLALPLRAALAAEAA 364
>gi|239744457 PREDICTED: hypothetical protein [Homo sapiens]
Length = 351
Score = 30.4 bits (67), Expect = 0.64
Identities = 42/152 (27%), Positives = 54/152 (35%), Gaps = 20/152 (13%)
Query: 6 LLRGRR--GRECAARGGARRAPGGEGRRPGRASQEVGLPHHQAGRA----------PAAA 53
+LRG+ G C A G RR+ G RR R S P H+ G PA
Sbjct: 157 VLRGQLSDGHGCGAPGSTRRS--GYSRR--RESCAAPSPSHRPGARLSLSLCLLPHPACL 212
Query: 54 ATTTVQGPVDKVEVALGLAAQQVALDAVRQRVVRQLEAAPVHQHEQPVRLRPLHRELLRA 113
+ Q P D ++ L R +R L P + P R R L RA
Sbjct: 213 CVSVPQAPSDSAGLSRSLPPPPAGRGGAGTRELRFLRFHPARPCKSPGRARHSDSRLSRA 272
Query: 114 LRAQRLGLGVRPRRQRPRLLLGLQVRHADEAS 145
G G +R L L L+ A EA+
Sbjct: 273 ----PPGAGTTRGTKRFPLALPLRAALAAEAA 300
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,672,843
Number of Sequences: 37866
Number of extensions: 319379
Number of successful extensions: 1909
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 1829
Number of HSP's gapped (non-prelim): 160
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.