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Search of human proteins with 239756098
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756098 PREDICTED: hypothetical protein [Homo sapiens]
(260 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756098 PREDICTED: hypothetical protein [Homo sapiens] 544 e-155
gi|239750629 PREDICTED: hypothetical protein XP_002347479 [Homo ... 470 e-133
gi|239744936 PREDICTED: hypothetical protein XP_002343312 [Homo ... 470 e-133
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens] 35 0.050
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 35 0.050
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 35 0.086
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 35 0.086
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.25
gi|146134341 hypothetical protein LOC133686 isoform 1 [Homo sapi... 33 0.33
gi|239741514 PREDICTED: hypothetical protein [Homo sapiens] 32 0.55
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 31 0.95
gi|4885363 goosecoid homeobox 2 [Homo sapiens] 31 1.2
gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo... 30 1.6
gi|117938768 GNAS complex locus alex [Homo sapiens] 30 1.6
gi|239749961 PREDICTED: hypothetical protein LOC100129826 [Homo ... 30 1.6
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 30 1.6
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 30 1.6
gi|239513942 PREDICTED: hypothetical protein [Homo sapiens] 30 2.1
gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H... 30 2.1
gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H... 30 2.1
gi|154816208 phosphotyrosine interaction domain containing 1 iso... 30 2.1
gi|40255260 phosphotyrosine interaction domain containing 1 isof... 30 2.1
gi|169164209 PREDICTED: hypothetical protein [Homo sapiens] 30 2.8
gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo ... 30 2.8
gi|239752704 PREDICTED: hypothetical protein [Homo sapiens] 29 3.6
gi|239747246 PREDICTED: hypothetical protein [Homo sapiens] 29 3.6
gi|239744254 PREDICTED: hypothetical protein [Homo sapiens] 29 3.6
gi|239742763 PREDICTED: hypothetical protein [Homo sapiens] 29 3.6
gi|239741067 PREDICTED: hypothetical protein XP_002342075 [Homo ... 29 3.6
gi|239740974 PREDICTED: hypothetical protein [Homo sapiens] 29 3.6
>gi|239756098 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 544 bits (1402), Expect = e-155
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 1 MSQDTTGVSHSKHNKYKMWSFHEIFDNLLQKPHKASEGFLVSAGPAAAVSGCLGGPSYVP 60
MSQDTTGVSHSKHNKYKMWSFHEIFDNLLQKPHKASEGFLVSAGPAAAVSGCLGGPSYVP
Sbjct: 1 MSQDTTGVSHSKHNKYKMWSFHEIFDNLLQKPHKASEGFLVSAGPAAAVSGCLGGPSYVP 60
Query: 61 GSERTRARQAAHLLQVVLEVEESQVSLHLADHFHGQCLFFMDDGQVQEPSPSSVSCCFQG 120
GSERTRARQAAHLLQVVLEVEESQVSLHLADHFHGQCLFFMDDGQVQEPSPSSVSCCFQG
Sbjct: 61 GSERTRARQAAHLLQVVLEVEESQVSLHLADHFHGQCLFFMDDGQVQEPSPSSVSCCFQG 120
Query: 121 SEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFSPSRGPSMAHSWGRSA 180
SEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFSPSRGPSMAHSWGRSA
Sbjct: 121 SEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFSPSRGPSMAHSWGRSA 180
Query: 181 AWNMARTSCGRCCGCAGPRAARCFLAGALAGGTAARTAVGSAAPPRRPINAGWGFLWGGV 240
AWNMARTSCGRCCGCAGPRAARCFLAGALAGGTAARTAVGSAAPPRRPINAGWGFLWGGV
Sbjct: 181 AWNMARTSCGRCCGCAGPRAARCFLAGALAGGTAARTAVGSAAPPRRPINAGWGFLWGGV 240
Query: 241 RLGEFPSQSDQKKRTGFVLC 260
RLGEFPSQSDQKKRTGFVLC
Sbjct: 241 RLGEFPSQSDQKKRTGFVLC 260
>gi|239750629 PREDICTED: hypothetical protein XP_002347479 [Homo
sapiens]
Length = 271
Score = 470 bits (1209), Expect = e-133
Identities = 227/231 (98%), Positives = 227/231 (98%), Gaps = 2/231 (0%)
Query: 32 PHK--ASEGFLVSAGPAAAVSGCLGGPSYVPGSERTRARQAAHLLQVVLEVEESQVSLHL 89
PH ASEGFLVSAGPAAAVSGCLGGPSYVPGSERTRARQAAHLLQVVLEVEE QVSLHL
Sbjct: 41 PHSLAASEGFLVSAGPAAAVSGCLGGPSYVPGSERTRARQAAHLLQVVLEVEEGQVSLHL 100
Query: 90 ADHFHGQCLFFMDDGQVQEPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFME 149
ADHFHGQCLFFMDDGQVQEPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFME
Sbjct: 101 ADHFHGQCLFFMDDGQVQEPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFME 160
Query: 150 SRPLSWRSSSSRSFFSPSRGPSMAHSWGRSAAWNMARTSCGRCCGCAGPRAARCFLAGAL 209
SRPLSWRSSSSRSFFSPSRGPSMAHSWGRSAAWNMARTSCGRCCGCAGPRAARCFLAGAL
Sbjct: 161 SRPLSWRSSSSRSFFSPSRGPSMAHSWGRSAAWNMARTSCGRCCGCAGPRAARCFLAGAL 220
Query: 210 AGGTAARTAVGSAAPPRRPINAGWGFLWGGVRLGEFPSQSDQKKRTGFVLC 260
AGGTAARTAVGSAAPPRRPINAGWGFLWGGVRLGEFPSQSDQKKRTGFVLC
Sbjct: 221 AGGTAARTAVGSAAPPRRPINAGWGFLWGGVRLGEFPSQSDQKKRTGFVLC 271
>gi|239744936 PREDICTED: hypothetical protein XP_002343312 [Homo
sapiens]
Length = 271
Score = 470 bits (1209), Expect = e-133
Identities = 227/231 (98%), Positives = 227/231 (98%), Gaps = 2/231 (0%)
Query: 32 PHK--ASEGFLVSAGPAAAVSGCLGGPSYVPGSERTRARQAAHLLQVVLEVEESQVSLHL 89
PH ASEGFLVSAGPAAAVSGCLGGPSYVPGSERTRARQAAHLLQVVLEVEE QVSLHL
Sbjct: 41 PHSLAASEGFLVSAGPAAAVSGCLGGPSYVPGSERTRARQAAHLLQVVLEVEEGQVSLHL 100
Query: 90 ADHFHGQCLFFMDDGQVQEPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFME 149
ADHFHGQCLFFMDDGQVQEPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFME
Sbjct: 101 ADHFHGQCLFFMDDGQVQEPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFME 160
Query: 150 SRPLSWRSSSSRSFFSPSRGPSMAHSWGRSAAWNMARTSCGRCCGCAGPRAARCFLAGAL 209
SRPLSWRSSSSRSFFSPSRGPSMAHSWGRSAAWNMARTSCGRCCGCAGPRAARCFLAGAL
Sbjct: 161 SRPLSWRSSSSRSFFSPSRGPSMAHSWGRSAAWNMARTSCGRCCGCAGPRAARCFLAGAL 220
Query: 210 AGGTAARTAVGSAAPPRRPINAGWGFLWGGVRLGEFPSQSDQKKRTGFVLC 260
AGGTAARTAVGSAAPPRRPINAGWGFLWGGVRLGEFPSQSDQKKRTGFVLC
Sbjct: 221 AGGTAARTAVGSAAPPRRPINAGWGFLWGGVRLGEFPSQSDQKKRTGFVLC 271
>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 35.4 bits (80), Expect = 0.050
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 107 QEPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFS- 165
Q SS SC Q S TSC + SS CS +S S S++SS + S S
Sbjct: 112 QSSRTSSTSCSCQSSRTSSTSCSCQSSRTSS--TCSCQTSRTSSTSCSYQSSRTSSTCSC 169
Query: 166 PSRGPSMAHSWGRSAAWNMARTSCGRCCGCAG 197
S G S S W +RTS C +G
Sbjct: 170 QSSGTS-----STSCNWQSSRTSSTCSCQSSG 196
Score = 35.4 bits (80), Expect = 0.050
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 107 QEPSPSSVSCCFQGSEPRGT-SCGSRRISCSSLTI--------CSYSSSFMESRPLSWRS 157
Q SS SC +Q S T SC S S +S + CS SS S S +S
Sbjct: 170 QSSGTSSTSCNWQSSRTSSTCSCQSSGTSSTSYSCQSSGTSSTCSCQSSGTSSTSCSCQS 229
Query: 158 SSSRSFFS-PSRGPSMAHSWGRSAAWNMARTSCGRCCGCAGPRAARCFLAGALAGGTAAR 216
S + S S S G S S +W +RTS C +G + C + T +
Sbjct: 230 SGTSSTCSCQSSGTSST-----SCSWQSSRTSSTCSCQSSGTSSTSCSCQSSGTSSTCSC 284
Query: 217 TAVGSAA 223
+ G+++
Sbjct: 285 QSSGTSS 291
Score = 34.7 bits (78), Expect = 0.086
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Query: 107 QEPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFSP 166
Q SS SC +Q S T C C S S S S SR S S S S
Sbjct: 89 QSSGTSSTSCSWQFSRTSSTCC------CQSSRTSSTSCSCQSSRTSSTSCSCQSSRTSS 142
Query: 167 SRGPSMAHSWGRSAAWNMARTSCGRCCGCAGPRAARCFLAGALAGGTAARTAVGSAA 223
+ + + S ++ +RTS C +G + C + T + + G+++
Sbjct: 143 TCSCQTSRTSSTSCSYQSSRTSSTCSCQSSGTSSTSCNWQSSRTSSTCSCQSSGTSS 199
Score = 33.5 bits (75), Expect = 0.19
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 108 EPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFSPS 167
+ S +S +C Q S TSC + SS CS SS S SW+SS + S S
Sbjct: 205 QSSGTSSTCSCQSSGTSSTSCSCQSSGTSST--CSCQSSGTSSTSCSWQSSRTSSTCSCQ 262
Query: 168 RGPSMAHSWGRSAAWNMARTSC------GRCCGCAGPRAA 201
+ + S ++ + SC C C R +
Sbjct: 263 SSGTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRTS 302
Score = 32.7 bits (73), Expect = 0.33
Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 24/123 (19%)
Query: 112 SSVSCCFQGSEPRGT-SCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFS-PSRG 169
SS SC Q S+ T SC S + S + CS SS S +W+SS + S S S G
Sbjct: 14 SSSSCSCQSSQTSSTCSCQSSQTSST----CSCQSSGTSSTSCNWQSSRTSSTCSCQSSG 69
Query: 170 PS------------------MAHSWGRSAAWNMARTSCGRCCGCAGPRAARCFLAGALAG 211
S + + S +W +RTS CC + + C +
Sbjct: 70 TSSTSCSCQSSETSSTCSCQSSGTSSTSCSWQFSRTSSTCCCQSSRTSSTSCSCQSSRTS 129
Query: 212 GTA 214
T+
Sbjct: 130 STS 132
Score = 32.0 bits (71), Expect = 0.55
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 108 EPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFSPS 167
+ S +S +C Q S TSC + SS CS SS S +W+SS + S S
Sbjct: 136 QSSRTSSTCSCQTSRTSSTSCSYQSSRTSST--CSCQSSGTSSTSCNWQSSRTSSTCSCQ 193
Query: 168 RGPSMAHSWGRSAAWNMARTSC 189
+ + S+ ++ + SC
Sbjct: 194 SSGTSSTSYSCQSSGTSSTCSC 215
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 35.4 bits (80), Expect = 0.050
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 107 QEPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFS- 165
Q SS SC Q S TSC + SS CS +S S S++SS + S S
Sbjct: 112 QSSRTSSTSCSCQSSRTSSTSCSCQSSRTSS--TCSCQTSRTSSTSCSYQSSRTSSTCSC 169
Query: 166 PSRGPSMAHSWGRSAAWNMARTSCGRCCGCAG 197
S G S S W +RTS C +G
Sbjct: 170 QSSGTS-----STSCNWQSSRTSSTCSCQSSG 196
Score = 33.5 bits (75), Expect = 0.19
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 108 EPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFSPS 167
+ S +S +C Q S TSC + SS CS SS S SW+SS + S S
Sbjct: 205 QSSGTSSTCSCQSSGTSSTSCSCQSSGTSST--CSCQSSGTSSTSCSWQSSRTSSTCSCQ 262
Query: 168 RGPSMAHSWGRSAAWNMARTSC------GRCCGCAGPRAA 201
+ + S ++ + SC C C R +
Sbjct: 263 SSRTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSCQSSRTS 302
Score = 32.0 bits (71), Expect = 0.55
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 108 EPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFSPS 167
+ S +S +C Q S TSC + SS CS SS S +W+SS + S S
Sbjct: 136 QSSRTSSTCSCQTSRTSSTSCSYQSSRTSST--CSCQSSGTSSTSCNWQSSRTSSTCSCQ 193
Query: 168 RGPSMAHSWGRSAAWNMARTSC 189
+ + S+ ++ + SC
Sbjct: 194 SSGTSSTSYSCQSSGTSSTCSC 215
Score = 29.6 bits (65), Expect = 2.8
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 112 SSVSCCFQGSEPRGT-SCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFS-PSRG 169
SS SC Q S+ T SC S + S + CS SS S +W+SS S S S G
Sbjct: 14 SSSSCSCQSSQTSSTCSCQSSQTSST----CSCQSSGTSSTSCNWQSSRISSTCSCQSSG 69
Query: 170 PSMAHSWGRSAAWNMARTSCGRCCGCAGPRAARC 203
S S + + TS C +G + C
Sbjct: 70 TS-----STSCSCQSSETSSTCSCQSSGTSSTSC 98
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 34.7 bits (78), Expect = 0.086
Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 17/105 (16%)
Query: 122 EPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFSPSRGPSMAHSWGRSAA 181
+P + GSR+ S SL SY + SSS S++ P WGRSAA
Sbjct: 906 DPMLVALGSRKSSVMSLGRMSYDQRSL--------SSSRSSYYGP---------WGRSAA 948
Query: 182 WNMARTSCGRCCGCAGPRAARCFLAGALAGGTAARTAVGSAAPPR 226
W R+S L+ GG PPR
Sbjct: 949 WASRRSSWNSLKHKPPSAEHESLLSAERGGGARVCEVAADEGPPR 993
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 34.7 bits (78), Expect = 0.086
Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 17/105 (16%)
Query: 122 EPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFSPSRGPSMAHSWGRSAA 181
+P + GSR+ S SL SY + SSS S++ P WGRSAA
Sbjct: 941 DPMLVALGSRKSSVMSLGRMSYDQRSL--------SSSRSSYYGP---------WGRSAA 983
Query: 182 WNMARTSCGRCCGCAGPRAARCFLAGALAGGTAARTAVGSAAPPR 226
W R+S L+ GG PPR
Sbjct: 984 WASRRSSWNSLKHKPPSAEHESLLSAERGGGARVCEVAADEGPPR 1028
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.1 bits (74), Expect = 0.25
Identities = 25/71 (35%), Positives = 32/71 (45%)
Query: 105 QVQEPSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFF 164
+V P+P+ +G P T +R S SS + S SSS S S SSSS S
Sbjct: 2578 RVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2637
Query: 165 SPSRGPSMAHS 175
S S S + S
Sbjct: 2638 SSSSSSSSSSS 2648
>gi|146134341 hypothetical protein LOC133686 isoform 1 [Homo
sapiens]
Length = 442
Score = 32.7 bits (73), Expect = 0.33
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 190 GRCCGCAGPRAARCFLAGALAGGTAARTAVGSAAPPRRPINAG 232
G CC AG RAA L G AGG AAR +G RR + G
Sbjct: 10 GSCCRVAGGRAAA--LRGPGAGGPAARPRLGGDGGGRRHLGQG 50
>gi|239741514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 390
Score = 32.0 bits (71), Expect = 0.55
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 139 TICSYSSSFMESRPLSWRSSSSRSFFSP-SRGPSMAHSW 176
T S + + P+SWR S+ SF P SRGP A W
Sbjct: 189 TPASQQPLWTQCLPISWRHWSAHSFLKPSSRGPGQASRW 227
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 31.2 bits (69), Expect = 0.95
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 121 SEPRGTSCGSRRISCSSLTICSYS---SSFMESRPLSWRSSSSRSFFSPSRGPSMAHS 175
S+ +SC SR S SS + CS+S SS S S SSSS S S S S + S
Sbjct: 2136 SDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSS 2193
>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
Length = 205
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 192 CCGCAGPRAARCFLAGALAGGTAARTAVGSAAPPRRPINAG 232
CC C GPRAA C A A G AR A P P++ G
Sbjct: 66 CCCCCGPRAAPCGPPEA-AAGLGARLAWPLRLGPAVPLSLG 105
>gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo
sapiens]
Length = 738
Score = 30.4 bits (67), Expect = 1.6
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 169 GPSMAHSWGRSAAWNMARTSCGRCCGCAGPRAARCFLAGALAGGTAARTAVGSAAPPRRP 228
GP+ A +W AW G A P + L A AG AR +G A P RR
Sbjct: 121 GPAAA-AWAGDEAWRR---------GPAAPPGDKGRLRPAAAGLPEARKLLGLAYPERRR 170
Query: 229 INAGWGFL 236
+ A GFL
Sbjct: 171 LAAAVGFL 178
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/64 (31%), Positives = 25/64 (39%)
Query: 184 MARTSCGRCCGCAGPRAARCFLAGALAGGTAARTAVGSAAPPRRPINAGWGFLWGGVRLG 243
+ R R G A PRAA + G AA +P P +A GF G +
Sbjct: 479 LLRGLLARLPGGASPRAAAAAACTTMKGWPAATMTPAETSPTMGPPDASAGFSIGEIAAA 538
Query: 244 EFPS 247
E PS
Sbjct: 539 ESPS 542
>gi|239749961 PREDICTED: hypothetical protein LOC100129826 [Homo
sapiens]
Length = 228
Score = 30.4 bits (67), Expect = 1.6
Identities = 39/129 (30%), Positives = 49/129 (37%), Gaps = 34/129 (26%)
Query: 120 GSE---PRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSRSFFSPSRGPSMAHSW 176
GSE P G+ R +S SS + S SS W S S SP RG S + W
Sbjct: 122 GSEQVLPTGSMSSPRGLSMSSPWVLSKSSP--------WGLSKS----SP-RGLSKSSPW 168
Query: 177 GRSAAW----NMARTSCGRCCGCAGPRAARCFLAGALAGGTAARTAVGSAAPPRRPINAG 232
G S ++ + + SC R AR L G + A P RP+
Sbjct: 169 GLSKSFLCRLSTSSPSCDRVSLLQVEDVARMHLEG-------------TPASPERPLLVA 215
Query: 233 WGFL-WGGV 240
WG W GV
Sbjct: 216 WGVAGWSGV 224
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 30.4 bits (67), Expect = 1.6
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 120 GSEPRGTSCGSRRISCSSLTI--CSYSSSFMESRPLSWRSSSSR-SFFSPSRGPSMAHSW 176
GS G+S + R S +S T+ SYSSS SR S SS R S SR P++
Sbjct: 511 GSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSRSPTIKARR 570
Query: 177 GRSAAWN 183
RS +++
Sbjct: 571 SRSRSYS 577
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 30.4 bits (67), Expect = 1.6
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 120 GSEPRGTSCGSRRISCSSLTI--CSYSSSFMESRPLSWRSSSSR-SFFSPSRGPSMAHSW 176
GS G+S + R S +S T+ SYSSS SR S SS R S SR P++
Sbjct: 511 GSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSRSPTIKARR 570
Query: 177 GRSAAWN 183
RS +++
Sbjct: 571 SRSRSYS 577
>gi|239513942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 300
Score = 30.0 bits (66), Expect = 2.1
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 109 PSPSSVSCCFQGSEPRGTSCGSRRISCSSLTICSYSSSFM-ESRPLSWRSSSS---RSFF 164
P P+ + C G G S R SC+ L S SSS + +R L R SSS + +
Sbjct: 22 PLPAPLGCSSLGPALVGLGSRSPRASCALLARLSRSSSSLARARSLKSRCSSSCCRQLWL 81
Query: 165 SPS-RGPSMAHSWGRSAAWNMARTSCGR 191
PS RG S R W+ S R
Sbjct: 82 EPSARGGRQDPSASRCCCWHFWACSRAR 109
>gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform b [Homo sapiens]
Length = 2347
Score = 30.0 bits (66), Expect = 2.1
Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 39/175 (22%)
Query: 79 EVEESQVSLHLADHFHGQCLFFMDDGQVQEPSPSSVSCCFQGSEPRGTSCGSRRISCSSL 138
+ +E + S+H + FH +++E + + C P G G +S L
Sbjct: 1028 DTDEDKTSVHFEEDFH----------KLRELQTTELKMCSLAVTPNGHLEGRGSLS-PPL 1076
Query: 139 TICSY--------SSSFMESRPL---SWRSSSSRSF--FSPSRGPSMAHS-----WGRSA 180
+C+ SS F+++ P S R SSS + P+ S WG S
Sbjct: 1077 IMCTAATPMPTPKSSPFLDAAPSLPDSRRGSSSSGDPPLGDQKPPASLRSSPCAPWGPSG 1136
Query: 181 AWNMAR---TSCGRC-----CGCAGPRAARCFLAGALAGGTAARTAVGSAAPPRR 227
AW+ R +S GR G G R + L+G G T G AAP R
Sbjct: 1137 AWSSRRSSWSSLGRAPSLKRRGQCGERES--LLSGEGKGSTDDEAEDGRAAPGPR 1189
>gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform a [Homo sapiens]
Length = 2353
Score = 30.0 bits (66), Expect = 2.1
Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 39/175 (22%)
Query: 79 EVEESQVSLHLADHFHGQCLFFMDDGQVQEPSPSSVSCCFQGSEPRGTSCGSRRISCSSL 138
+ +E + S+H + FH +++E + + C P G G +S L
Sbjct: 1028 DTDEDKTSVHFEEDFH----------KLRELQTTELKMCSLAVTPNGHLEGRGSLS-PPL 1076
Query: 139 TICSY--------SSSFMESRPL---SWRSSSSRSF--FSPSRGPSMAHS-----WGRSA 180
+C+ SS F+++ P S R SSS + P+ S WG S
Sbjct: 1077 IMCTAATPMPTPKSSPFLDAAPSLPDSRRGSSSSGDPPLGDQKPPASLRSSPCAPWGPSG 1136
Query: 181 AWNMAR---TSCGRC-----CGCAGPRAARCFLAGALAGGTAARTAVGSAAPPRR 227
AW+ R +S GR G G R + L+G G T G AAP R
Sbjct: 1137 AWSSRRSSWSSLGRAPSLKRRGQCGERES--LLSGEGKGSTDDEAEDGRAAPGPR 1189
>gi|154816208 phosphotyrosine interaction domain containing 1
isoform 2 [Homo sapiens]
Length = 217
Score = 30.0 bits (66), Expect = 2.1
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 49 VSGCLGGPSYVPGSERTRARQAAHLLQVVLEVEESQVSLHLADHFHGQCLFFMDDGQV 106
+SGC P + T AR+ +LE+ QV LH DH G+ MD QV
Sbjct: 74 LSGCTEKPVIELWKKHTLAREDVFPANALLEIRPFQVWLHHLDH-KGEATVHMDTFQV 130
>gi|40255260 phosphotyrosine interaction domain containing 1 isoform
1 [Homo sapiens]
Length = 248
Score = 30.0 bits (66), Expect = 2.1
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 49 VSGCLGGPSYVPGSERTRARQAAHLLQVVLEVEESQVSLHLADHFHGQCLFFMDDGQV 106
+SGC P + T AR+ +LE+ QV LH DH G+ MD QV
Sbjct: 105 LSGCTEKPVIELWKKHTLAREDVFPANALLEIRPFQVWLHHLDH-KGEATVHMDTFQV 161
>gi|169164209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 29.6 bits (65), Expect = 2.8
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 150 SRPLSWRSSSSRSFFSPSRGPSMAHSWGRSAAWNMART------SCGRCCGCAGP----- 198
+RP S S P PS A + RS RT SCG G AG
Sbjct: 39 ARPAPSASPSPSRAAGPFLPPSHASTSSRSPPPRARRTEPAVPPSCGSGPGAAGALRMGL 98
Query: 199 ----RAARCFLAGALAGGTAARTAVGS 221
RAAR ++ ALAG AA +G+
Sbjct: 99 GRTQRAARVAVSRALAGTVAAAAGLGA 125
>gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo
sapiens]
Length = 179
Score = 29.6 bits (65), Expect = 2.8
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 150 SRPLSWRSSSSRSFFSPSRGPSMAHSWGRSAAWNMART------SCGRCCGCAGP----- 198
+RP S S P PS A + RS RT SCG G AG
Sbjct: 39 ARPAPSASPSPSRAAGPFLPPSHASTSSRSPPPRARRTEPAVPPSCGSGPGAAGALRMGL 98
Query: 199 ----RAARCFLAGALAGGTAARTAVGS 221
RAAR ++ ALAG AA +G+
Sbjct: 99 GRTQRAARVAVSRALAGTVAAAAGLGA 125
>gi|239752704 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 29.3 bits (64), Expect = 3.6
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 120 GSEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSR---SFFSPSRGPSMA 173
GS P T SCS+ + +++S +RP S R S+SR + F+ SRG S A
Sbjct: 45 GSRPAATWSWCH--SCSARPLSMWATSASPARPSSVRPSASRRPGTLFTRSRGSSQA 99
>gi|239747246 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 29.3 bits (64), Expect = 3.6
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 120 GSEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSR---SFFSPSRGPSMA 173
GS P T SCS+ + +++S +RP S R S+SR + F+ SRG S A
Sbjct: 45 GSRPAATWSWCH--SCSARPLSMWATSASPARPSSVRPSASRRPGTLFTRSRGSSQA 99
>gi|239744254 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 29.3 bits (64), Expect = 3.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 152 PLSWRSSSSRSFFSPSR-GPSMAHSW 176
P+SWR S+ SF PS GP A W
Sbjct: 202 PISWRPWSAHSFLKPSSPGPGQASRW 227
>gi|239742763 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 29.3 bits (64), Expect = 3.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 152 PLSWRSSSSRSFFSPSR-GPSMAHSW 176
P+SWR S+ SF PS GP A W
Sbjct: 202 PISWRPWSAHSFLKPSSPGPGQASRW 227
>gi|239741067 PREDICTED: hypothetical protein XP_002342075 [Homo
sapiens]
Length = 207
Score = 29.3 bits (64), Expect = 3.6
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 120 GSEPRGTSCGSRRISCSSLTICSYSSSFMESRPLSWRSSSSR---SFFSPSRGPSMA 173
GS P T SCS+ + +++S +RP S R S+SR + F+ SRG S A
Sbjct: 45 GSRPAATWSWCH--SCSARPLSMWATSASPARPSSVRPSASRRPGTLFTRSRGSSQA 99
>gi|239740974 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 29.3 bits (64), Expect = 3.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 152 PLSWRSSSSRSFFSPSR-GPSMAHSW 176
P+SWR S+ SF PS GP A W
Sbjct: 202 PISWRPWSAHSFLKPSSPGPGQASRW 227
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.131 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,558,555
Number of Sequences: 37866
Number of extensions: 530923
Number of successful extensions: 2049
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1932
Number of HSP's gapped (non-prelim): 114
length of query: 260
length of database: 18,247,518
effective HSP length: 100
effective length of query: 160
effective length of database: 14,460,918
effective search space: 2313746880
effective search space used: 2313746880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.