Guide to the Human Genome
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Name: PID1 Sequence: fasta or formatted (248aa) NCBI GI: 40255260
Description:

phosphotyrosine interaction domain containing 1 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {217aa} phosphotyrosine interaction domain containing 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         17           1
 C cysteine            3.2          8           1
 D aspartate           4.4         11           2
 E glutamate           8.9         22           2
 F phenylalanine       4.0         10           1
 G glycine             4.0         10           1
 H histidine           6.0         15           2
 I isoleucine          3.6          9           1
 K lysine              6.5         16           2
 L leucine            10.1         25           2
 M methionine          4.4         11           2
 N asparagine          2.8          7           1
 P proline             5.2         13           1
 Q glutamine           2.8          7           1
 R arginine            3.6          9           1
 S serine              7.7         19           3
 T threonine           6.9         17           3
 V valine              5.6         14           1
 W tryptophan          1.6          4           1
 Y tyrosine            1.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphotyrosine interaction domain containing 1 isof... 
PID1                  0.825   phosphotyrosine interaction domain containing 1 iso...
FAM43A                0.045   hypothetical protein LOC131583 
FAM43B                0.041   family with sequence similarity 43, member B 
LDLRAP1               0.020   low density lipoprotein receptor adaptor protein 1 ...
SDHA                  0.014   succinate dehydrogenase complex, subunit A, flavopr...
LOC100134108          0.014   PREDICTED: similar to succinate dehydrogenase compl...
RABGAP1L              0.014   RAB GTPase activating protein 1-like isoform A [Homo...
TRIML1                0.014   tripartite motif family-like 1 
LOC100293412          0.010   PREDICTED: hypothetical protein 
LOC100290067          0.010   PREDICTED: hypothetical protein XP_002347479 
LOC100289251          0.010   PREDICTED: hypothetical protein XP_002343312 
SNRK                  0.006   SNF related kinase 
SNRK                  0.006   SNF related kinase 
PHF20                 0.006   PHD finger protein 20 
LOC100127899          0.006   PREDICTED: hypothetical protein 
LOC100127899          0.006   PREDICTED: hypothetical protein 
LOC100134498          0.006   PREDICTED: hypothetical protein 
KLHL22                0.006   kelch-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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