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Search of human proteins with 239756056
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756056 PREDICTED: similar to hCG2038535 [Homo sapiens]
(147 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756056 PREDICTED: similar to hCG2038535 [Homo sapiens] 315 7e-87
gi|239750553 PREDICTED: similar to hCG2038535 [Homo sapiens] 315 7e-87
gi|239744850 PREDICTED: hypothetical protein XP_002344130 [Homo ... 315 7e-87
gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo ... 34 0.038
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 34 0.050
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 34 0.050
gi|239755134 PREDICTED: hypothetical protein [Homo sapiens] 33 0.066
gi|239749639 PREDICTED: hypothetical protein [Homo sapiens] 33 0.066
gi|239743912 PREDICTED: hypothetical protein XP_002342972 [Homo ... 33 0.066
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 33 0.086
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 33 0.086
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 33 0.086
gi|22902136 osterix [Homo sapiens] 32 0.25
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 32 0.25
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 32 0.25
gi|169214023 PREDICTED: hypothetical protein [Homo sapiens] 31 0.42
gi|169214468 PREDICTED: hypothetical protein [Homo sapiens] 31 0.42
gi|5453992 protein tyrosine phosphatase, non-receptor type 13 is... 31 0.42
gi|88501741 TRIO and F-actin binding protein isoform 2 [Homo sap... 30 0.55
gi|88501740 TRIO and F-actin binding protein isoform 1 [Homo sap... 30 0.55
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 30 0.55
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 30 0.55
gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [H... 30 0.95
gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2... 30 0.95
gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1... 30 0.95
gi|20127541 serum/glucocorticoid regulated kinase 2 isoform beta... 30 0.95
gi|139394599 hypermethylated in cancer 2 [Homo sapiens] 30 0.95
gi|224282174 DH and coiled-coil domain-containing protein [Homo ... 29 1.2
gi|169163848 PREDICTED: hypothetical protein [Homo sapiens] 29 1.2
gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary... 29 1.2
>gi|239756056 PREDICTED: similar to hCG2038535 [Homo sapiens]
Length = 147
Score = 315 bits (808), Expect = 7e-87
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MPPFWAYKNPRPLQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPA 60
MPPFWAYKNPRPLQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPA
Sbjct: 1 MPPFWAYKNPRPLQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPA 60
Query: 61 GGGGGWPGQSGESRGCRAPQLQGKTISLLAAPWAESYFHSIKLCTHSPSLWVIRFFRYNK 120
GGGGGWPGQSGESRGCRAPQLQGKTISLLAAPWAESYFHSIKLCTHSPSLWVIRFFRYNK
Sbjct: 61 GGGGGWPGQSGESRGCRAPQLQGKTISLLAAPWAESYFHSIKLCTHSPSLWVIRFFRYNK 120
Query: 121 ARTQIQKALCSCHNVEGLIELVNTSRL 147
ARTQIQKALCSCHNVEGLIELVNTSRL
Sbjct: 121 ARTQIQKALCSCHNVEGLIELVNTSRL 147
>gi|239750553 PREDICTED: similar to hCG2038535 [Homo sapiens]
Length = 147
Score = 315 bits (808), Expect = 7e-87
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MPPFWAYKNPRPLQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPA 60
MPPFWAYKNPRPLQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPA
Sbjct: 1 MPPFWAYKNPRPLQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPA 60
Query: 61 GGGGGWPGQSGESRGCRAPQLQGKTISLLAAPWAESYFHSIKLCTHSPSLWVIRFFRYNK 120
GGGGGWPGQSGESRGCRAPQLQGKTISLLAAPWAESYFHSIKLCTHSPSLWVIRFFRYNK
Sbjct: 61 GGGGGWPGQSGESRGCRAPQLQGKTISLLAAPWAESYFHSIKLCTHSPSLWVIRFFRYNK 120
Query: 121 ARTQIQKALCSCHNVEGLIELVNTSRL 147
ARTQIQKALCSCHNVEGLIELVNTSRL
Sbjct: 121 ARTQIQKALCSCHNVEGLIELVNTSRL 147
>gi|239744850 PREDICTED: hypothetical protein XP_002344130 [Homo
sapiens]
Length = 147
Score = 315 bits (808), Expect = 7e-87
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MPPFWAYKNPRPLQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPA 60
MPPFWAYKNPRPLQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPA
Sbjct: 1 MPPFWAYKNPRPLQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPA 60
Query: 61 GGGGGWPGQSGESRGCRAPQLQGKTISLLAAPWAESYFHSIKLCTHSPSLWVIRFFRYNK 120
GGGGGWPGQSGESRGCRAPQLQGKTISLLAAPWAESYFHSIKLCTHSPSLWVIRFFRYNK
Sbjct: 61 GGGGGWPGQSGESRGCRAPQLQGKTISLLAAPWAESYFHSIKLCTHSPSLWVIRFFRYNK 120
Query: 121 ARTQIQKALCSCHNVEGLIELVNTSRL 147
ARTQIQKALCSCHNVEGLIELVNTSRL
Sbjct: 121 ARTQIQKALCSCHNVEGLIELVNTSRL 147
>gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo
sapiens]
Length = 201
Score = 34.3 bits (77), Expect = 0.038
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 1 MPPFWAYKNPRPLQADTQ-VAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGP 59
+P + + P+PL + V G P G + +S++GA G + P+GRG
Sbjct: 85 LPAARSPRGPQPLSPRSSWVRGMPGRG---GHQRPLFSTLGA--------GFQPPLGRGG 133
Query: 60 AGGGGGWPGQSGESRGCRAPQL 81
AG GG + +R C AP L
Sbjct: 134 AGRGGAPASLASSARPCAAPAL 155
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 33.9 bits (76), Expect = 0.050
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 13 LQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPAG-----GGGGWP 67
LQ V G P + + G + S GAP + + + KP +GP G G G P
Sbjct: 569 LQGLPGVPGIPGAKGVAGEK----GSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLP 624
Query: 68 GQSGESRGCRAPQLQGKTISL 88
G GE +P L GK SL
Sbjct: 625 GSRGELGPVGSPGLPGKLGSL 645
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 33.9 bits (76), Expect = 0.050
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 13 LQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPAG-----GGGGWP 67
LQ V G P + + G + S GAP + + + KP +GP G G G P
Sbjct: 326 LQGLPGVPGIPGAKGVAGEK----GSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLP 381
Query: 68 GQSGESRGCRAPQLQGKTISL 88
G GE +P L GK SL
Sbjct: 382 GSRGELGPVGSPGLPGKLGSL 402
>gi|239755134 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 33.5 bits (75), Expect = 0.066
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 31 RRHKRWSSIGAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQ-----GKT 85
R RW + P R VG + G PG S +GCRAP + G
Sbjct: 58 RLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPA 117
Query: 86 ISLLAAPWAESYFHSI 101
+LLA P + + H +
Sbjct: 118 AALLAPPSPQVFIHHL 133
>gi|239749639 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 33.5 bits (75), Expect = 0.066
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 31 RRHKRWSSIGAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQ-----GKT 85
R RW + P R VG + G PG S +GCRAP + G
Sbjct: 58 RLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPA 117
Query: 86 ISLLAAPWAESYFHSI 101
+LLA P + + H +
Sbjct: 118 AALLAPPSPQVFIHHL 133
>gi|239743912 PREDICTED: hypothetical protein XP_002342972 [Homo
sapiens]
Length = 180
Score = 33.5 bits (75), Expect = 0.066
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 31 RRHKRWSSIGAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQ-----GKT 85
R RW + P R VG + G PG S +GCRAP + G
Sbjct: 58 RLASRWMQVRDPLGLGLGASGRADVGSAMSCRAGSSPGASSAGQGCRAPPGRERARLGPA 117
Query: 86 ISLLAAPWAESYFHSI 101
+LLA P + + H +
Sbjct: 118 AALLAPPSPQVFIHHL 133
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 33.1 bits (74), Expect = 0.086
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 40 GAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQG 83
G Q+ G R+P+G P+ G GG G GCR P +G
Sbjct: 47 GRSAQRRAGAGARRPIGAAPSVGPGGELQGWGRKSGCRPPGPEG 90
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 33.1 bits (74), Expect = 0.086
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 40 GAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQG 83
G Q+ G R+P+G P+ G GG G GCR P +G
Sbjct: 47 GRSAQRRAGAGARRPIGAAPSVGPGGELQGWGRKSGCRPPGPEG 90
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 33.1 bits (74), Expect = 0.086
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 40 GAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQG 83
G Q+ G R+P+G P+ G GG G GCR P +G
Sbjct: 47 GRSAQRRAGAGARRPIGAAPSVGPGGELQGWGRKSGCRPPGPEG 90
>gi|22902136 osterix [Homo sapiens]
Length = 431
Score = 31.6 bits (70), Expect = 0.25
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 2 PPFWAYKNPRPLQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPAG 61
P +A NP P A + +P QH+ + + ++G Q + G + P G G
Sbjct: 199 PSDFAPLNPAPYPAPHLL--QPGPQHVLPQDVYKPKAVGNSGQLEGSGGAKPPRGAS-TG 255
Query: 62 GGGGWPGQSGESRGCRAPQLQ 82
G GG+ G C P Q
Sbjct: 256 GSGGYGGSGAGRSSCDCPNCQ 276
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 31.6 bits (70), Expect = 0.25
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 49 TGTRKPVGRGPAGGGGGWPGQSGESRGCRAP 79
TG+ GRGP G GGG + G R C +P
Sbjct: 1731 TGSPGAPGRGPGGAGGGGDTEGGLCRRCYSP 1761
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 31.6 bits (70), Expect = 0.25
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 49 TGTRKPVGRGPAGGGGGWPGQSGESRGCRAP 79
TG+ GRGP G GGG + G R C +P
Sbjct: 1766 TGSPGAPGRGPGGAGGGGDTEGGLCRRCYSP 1796
>gi|169214023 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 30.8 bits (68), Expect = 0.42
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 40 GAPQQKDTLTGTRKPV-GRGPAGGGGGWPGQSG-ESRGCRAPQLQGKTISLLAAPWAESY 97
GAP + L GT + GPA G G WP +G ES + G S+ P S
Sbjct: 89 GAPTHRPALKGTEAQLLAPGPAAGSGCWPELAGTESASAEREREGGGPRSIRPRPSLLSS 148
Query: 98 FHSIKLCTHSPSL 110
HS T +P L
Sbjct: 149 GHS----TRAPGL 157
>gi|169214468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 30.8 bits (68), Expect = 0.42
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 40 GAPQQKDTLTGTRKPV-GRGPAGGGGGWPGQSG-ESRGCRAPQLQGKTISLLAAPWAESY 97
GAP + L GT + GPA G G WP +G ES + G S+ P S
Sbjct: 89 GAPTHRPALKGTEAQLLAPGPAAGSGCWPELAGTESASAEREREGGGPRSIRPRPSLLSS 148
Query: 98 FHSIKLCTHSPSL 110
HS T +P L
Sbjct: 149 GHS----TRAPGL 157
>gi|5453992 protein tyrosine phosphatase, non-receptor type 13 isoform
2 [Homo sapiens]
Length = 2466
Score = 30.8 bits (68), Expect = 0.42
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 11 RPLQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRG 58
R ++D+ P + ++ HKRWS + +P+++ TL +K G
Sbjct: 1037 RKHESDSSSIEDPGQAYVLDVLHKRWSIVSSPEREITLVNLKKDAKYG 1084
>gi|88501741 TRIO and F-actin binding protein isoform 2 [Homo
sapiens]
Length = 431
Score = 30.4 bits (67), Expect = 0.55
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 36 WSSIGAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQGKTISLLAAPW 93
W G + K+ R+ RG GGGGG P +R R ++ LL PW
Sbjct: 4 WKGPGQRRGKEGPEARRRAAERGGGGGGGGVPAPRSPAREPRP-----RSCLLLPPPW 56
>gi|88501740 TRIO and F-actin binding protein isoform 1 [Homo
sapiens]
Length = 652
Score = 30.4 bits (67), Expect = 0.55
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 36 WSSIGAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQGKTISLLAAPW 93
W G + K+ R+ RG GGGGG P +R R ++ LL PW
Sbjct: 4 WKGPGQRRGKEGPEARRRAAERGGGGGGGGVPAPRSPAREPRP-----RSCLLLPPPW 56
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 30.4 bits (67), Expect = 0.55
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 41 APQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRG------CRAPQLQGKTISLLAAPWA 94
A +QK G +K G G GGGGG G S G R P Q T S P
Sbjct: 212 AAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQG 271
Query: 95 ES 96
E+
Sbjct: 272 EA 273
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 30.4 bits (67), Expect = 0.55
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 41 APQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRG------CRAPQLQGKTISLLAAPWA 94
A +QK G +K G G GGGGG G S G R P Q T S P
Sbjct: 196 AAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQG 255
Query: 95 ES 96
E+
Sbjct: 256 EA 257
>gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 541
Score = 29.6 bits (65), Expect = 0.95
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 50 GTRKPVGRGPAGGGGGWPGQSGESRGC---------RAPQLQGKTISL 88
G+R G GGGG W +SG R C +AP L+ I+L
Sbjct: 86 GSRSGPGPAERGGGGSWLQESGCVRDCNSQHTFLSDQAPSLKSSAIAL 133
>gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2
[Homo sapiens]
Length = 994
Score = 29.6 bits (65), Expect = 0.95
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 33 HKRWSSIGAPQQKDTLTGTRKPVG----RGPAGGGGGWPGQSGESRGCRAPQLQGKTISL 88
H+ W G P+ G G RG GGGGG G G RG L+G+ I +
Sbjct: 6 HQNWGRDGGPRSSGGGYGGGPAGGHGGNRGSGGGGGGGGGGRG-GRGRHPGHLKGREIGM 64
>gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1
[Homo sapiens]
Length = 1008
Score = 29.6 bits (65), Expect = 0.95
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 33 HKRWSSIGAPQQKDTLTGTRKPVG----RGPAGGGGGWPGQSGESRGCRAPQLQGKTISL 88
H+ W G P+ G G RG GGGGG G G RG L+G+ I +
Sbjct: 6 HQNWGRDGGPRSSGGGYGGGPAGGHGGNRGSGGGGGGGGGGRG-GRGRHPGHLKGREIGM 64
>gi|20127541 serum/glucocorticoid regulated kinase 2 isoform beta
[Homo sapiens]
Length = 427
Score = 29.6 bits (65), Expect = 0.95
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 48 LTGTRKPVGRGPAGGGGGWPGQSGESRGCRAPQLQG-----KTISLLAAP 92
LT RKP G G G GGW GQ C P + G T+S L P
Sbjct: 5 LTSGRKPSGGGRCTGRGGWRGQ-----WCLKPWMGGADPPTPTLSCLLLP 49
>gi|139394599 hypermethylated in cancer 2 [Homo sapiens]
Length = 615
Score = 29.6 bits (65), Expect = 0.95
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 21 GRPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCRAP 79
G+P + R K W +K+ + G+ P R AG G PG+ GE G R P
Sbjct: 324 GQPRKSLRHSTRKKEWG------KKEPVAGS--PFERREAGPKGPCPGEEGEGVGDRVP 374
>gi|224282174 DH and coiled-coil domain-containing protein [Homo
sapiens]
Length = 844
Score = 29.3 bits (64), Expect = 1.2
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 1 MPPFWAYKNPRPLQADTQVAGRPNEQHIRGRRHKRWSSIGAPQQ 44
MPP + + L Q G+P++ + GR+H+R S+ AP Q
Sbjct: 515 MPPVKKSQQQQSLMESMQ-PGKPSDWELEGRKHERPESLLAPTQ 557
>gi|169163848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 29.3 bits (64), Expect = 1.2
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 50 GTRKPVGRGPAGGGG----GWPGQSGESR 74
GTR P GRG AGG G GW + G R
Sbjct: 37 GTRGPGGRGLAGGKGKLKRGWEREGGSGR 65
>gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 29.3 bits (64), Expect = 1.2
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 22 RPNEQHIRGRRHKRWSSIGAPQQKDTLTGTRKPVGRGPAGGGGGWPGQSGESRGCR 77
R + + G+R K+ S +++ + +G R G GGGGG G G R R
Sbjct: 177 RELRRELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRR 232
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,941,223
Number of Sequences: 37866
Number of extensions: 360869
Number of successful extensions: 2819
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 2475
Number of HSP's gapped (non-prelim): 369
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.