Search of human proteins with 239755947

Search of human proteins with 239755947

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755947 PREDICTED: hypothetical protein [Homo sapiens]
         (129 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755947 PREDICTED: hypothetical protein [Homo sapiens]           273   2e-74
gi|239744756 PREDICTED: hypothetical protein XP_002343266 [Homo ...   270   3e-73
gi|239750454 PREDICTED: hypothetical protein XP_002347366 [Homo ...   268   9e-73
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [...    35   0.016
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H...    35   0.016
gi|56549696 E1A binding protein p400 [Homo sapiens]                    34   0.037
gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens]                 34   0.037
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         34   0.037
gi|169194701 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|89031838 PREDICTED: hypothetical protein [Homo sapiens]             32   0.14 
gi|89030878 PREDICTED: hypothetical protein [Homo sapiens]             32   0.14 
gi|71143119 signal-induced proliferation-associated 1 like 3 [Ho...    32   0.14 
gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming ...    32   0.18 
gi|38327037 hyperpolarization activated cyclic nucleotide-gated ...    31   0.24 
gi|95147555 microtubule-associated protein 1A [Homo sapiens]           31   0.31 
gi|20143482 melanoma antigen family E, 1 [Homo sapiens]                31   0.31 
gi|226442736 ring finger protein 222 [Homo sapiens]                    30   0.40 
gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens]         30   0.40 
gi|149773484 leucine rich repeat and fibronectin type III domain...    30   0.40 
gi|150170670 piccolo isoform 2 [Homo sapiens]                          30   0.40 
gi|150378539 piccolo isoform 1 [Homo sapiens]                          30   0.40 
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [...    30   0.53 
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ...    29   0.90 
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ...    29   0.90 
gi|21040275 AlkB homolog 3 [Homo sapiens]                              29   0.90 
gi|157502169 astacin-like metalloendopeptidase [Homo sapiens]          29   0.90 
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        29   0.90 
gi|110578663 hypothetical protein LOC203074 [Homo sapiens]             29   0.90 
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    29   1.2  
gi|111185957 downstream of tyrosine kinase 7 [Homo sapiens]            28   1.5  

>gi|239755947 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 129

 Score =  273 bits (699), Expect = 2e-74
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   METPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAE 60
           METPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAE
Sbjct: 1   METPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAE 60

Query: 61  TTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKR 120
           TTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKR
Sbjct: 61  TTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKR 120

Query: 121 RKKSSSSEY 129
           RKKSSSSEY
Sbjct: 121 RKKSSSSEY 129


>gi|239744756 PREDICTED: hypothetical protein XP_002343266 [Homo
           sapiens]
          Length = 140

 Score =  270 bits (689), Expect = 3e-73
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 3   TPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 62
           TPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT
Sbjct: 14  TPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 73

Query: 63  QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK 122
           QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK
Sbjct: 74  QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK 133

Query: 123 KSSSSEY 129
           KSSSSEY
Sbjct: 134 KSSSSEY 140


>gi|239750454 PREDICTED: hypothetical protein XP_002347366 [Homo
           sapiens]
          Length = 144

 Score =  268 bits (685), Expect = 9e-73
 Identities = 126/127 (99%), Positives = 127/127 (100%)

Query: 3   TPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 62
           +PGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT
Sbjct: 18  SPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 77

Query: 63  QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK 122
           QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK
Sbjct: 78  QLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRRK 137

Query: 123 KSSSSEY 129
           KSSSSEY
Sbjct: 138 KSSSSEY 144


>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
           [Homo sapiens]
          Length = 828

 Score = 35.0 bits (79), Expect = 0.016
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 3   TPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 62
           T G +A  GP    +     P+P   PS  +P  + +   +RS  R + SP +A  A   
Sbjct: 570 TEGSEARAGP---PAPAPPAPIPPPAPSQSSPPEQPQSMEMRSVLRKAGSPRKARRARLN 626

Query: 63  QLEGLVES-------VPQKATDRMPDPRPISRHGLCAFH 94
            L  L+++       V Q+A   M DP   +  G+ A H
Sbjct: 627 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALH 665


>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
           sapiens]
          Length = 828

 Score = 35.0 bits (79), Expect = 0.016
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 3   TPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETT 62
           T G +A  GP    +     P+P   PS  +P  + +   +RS  R + SP +A  A   
Sbjct: 570 TEGSEARAGP---PAPAPPAPIPPPAPSQSSPPEQPQSMEMRSVLRKAGSPRKARRARLN 626

Query: 63  QLEGLVES-------VPQKATDRMPDPRPISRHGLCAFH 94
            L  L+++       V Q+A   M DP   +  G+ A H
Sbjct: 627 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALH 665


>gi|56549696 E1A binding protein p400 [Homo sapiens]
          Length = 3122

 Score = 33.9 bits (76), Expect = 0.037
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 19  PRKRPLPASDPSWGAPITEARGPG---LRSN--GRHSSSPHRAWSAETTQLEGLVESVPQ 73
           P  RPLP S  S  AP++ + GPG    RS+   R SS+ ++A S  T++  G+V S P 
Sbjct: 656 PCPRPLPTSSTSSLAPVSGS-GPGPSPARSSPVNRPSSATNKALSPVTSRTPGVVASAPT 714

Query: 74  K 74
           K
Sbjct: 715 K 715


>gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens]
          Length = 572

 Score = 33.9 bits (76), Expect = 0.037
 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 8   AAPG-PLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEG 66
           A PG PL LT+LP   P P   P   AP+   R P           P R     TTQL  
Sbjct: 456 APPGAPLALTALPDPDPEPPGTPEMQAPVASRRKPPSAFREWRLLGPFR---RPTTQLRA 512

Query: 67  LVESVPQK 74
            V S+  K
Sbjct: 513 KVSSLSHK 520


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 33.9 bits (76), Expect = 0.037
 Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 29/135 (21%)

Query: 4   PGVKAAPGPLCLTSLPRKRPLPASDP--SWGAPITEARGPGLRSNGRHSSSPHRAWSAET 61
           P  +A+P P      P KR +  S P     +P+T+ R P L S  R  SSP R+     
Sbjct: 621 PKRRASPSP------PPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREAR 674

Query: 62  TQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFR----SPEGRE---PHAGP--- 111
           +         PQ      P PRP  R    +  P    R    SP+ R+   P   P   
Sbjct: 675 S---------PQPNKRHSPSPRP--RAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRR 723

Query: 112 VSQCADYKRRKKSSS 126
           VS+  + K+ KK++S
Sbjct: 724 VSRTPEPKKIKKAAS 738


>gi|169194701 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 139

 Score = 32.0 bits (71), Expect = 0.14
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 34  PITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISR------ 87
           P   AR P    +G H+ S   A    T Q      S P+ A+ R+  PRP++R      
Sbjct: 22  PTPRARPPDC--SGGHAPSGFPALGLRTAQRPRPFSSSPRSASGRLRGPRPVARGPAHSS 79

Query: 88  --HGLCAFHPSTTFRSPEGREPHAGPVSQ 114
              GL A+ P       +   P   PV++
Sbjct: 80  SPTGLPAYLPPAAALDSQTSAPTVSPVTR 108


>gi|89031838 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 139

 Score = 32.0 bits (71), Expect = 0.14
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 34  PITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISR------ 87
           P   AR P    +G H+ S   A    T Q      S P+ A+ R+  PRP++R      
Sbjct: 22  PTPRARPPDC--SGGHAPSGFPALGLRTAQRPRPFSSSPRSASGRLRGPRPVARGPAHSS 79

Query: 88  --HGLCAFHPSTTFRSPEGREPHAGPVSQ 114
              GL A+ P       +   P   PV++
Sbjct: 80  SPTGLPAYLPPAAALDSQTSAPTVSPVTR 108


>gi|89030878 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 139

 Score = 32.0 bits (71), Expect = 0.14
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 34  PITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISR------ 87
           P   AR P    +G H+ S   A    T Q      S P+ A+ R+  PRP++R      
Sbjct: 22  PTPRARPPDC--SGGHAPSGFPALGLRTAQRPRPFSSSPRSASGRLRGPRPVARGPAHSS 79

Query: 88  --HGLCAFHPSTTFRSPEGREPHAGPVSQ 114
              GL A+ P       +   P   PV++
Sbjct: 80  SPTGLPAYLPPAAALDSQTSAPTVSPVTR 108


>gi|71143119 signal-induced proliferation-associated 1 like 3 [Homo
            sapiens]
          Length = 1781

 Score = 32.0 bits (71), Expect = 0.14
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 12/104 (11%)

Query: 16   TSLPRKRPLPASDPSWGAPITEAR---GPGLRSNGRHSSSPHRAWSA----ETTQLEGLV 68
            T  P  RPLP SDP              P LR++ R   SP + + +    +  +L  + 
Sbjct: 1462 TEEPPPRPLPFSDPKKQVDTNTKNVFGQPRLRASLRDLRSPRKNYKSTIEDDLKKLIIMD 1521

Query: 69   ESVPQKATDRMPDP-----RPISRHGLCAFHPSTTFRSPEGREP 107
               P++  D    P     R +S   LC+     +F SP G EP
Sbjct: 1522 NLGPEQERDTGQSPQKGLQRTLSDESLCSGRREPSFASPAGLEP 1565


>gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming
           sequence b [Homo sapiens]
          Length = 982

 Score = 31.6 bits (70), Expect = 0.18
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 26  ASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPI 85
           ASDP    P+  AR P  R N +H SS +R  S     +  L E         +P P P 
Sbjct: 772 ASDP---VPLPPARPP-TRDNPKHGSSLNRTPSDYDLLIPPLGEDAFDALPPSLPPPPPP 827

Query: 86  SRHGLCAFH--PSTTFRSPEGRE 106
           +RH L      P ++ R   G++
Sbjct: 828 ARHSLIEHSKPPGSSSRPSSGQD 850


>gi|38327037 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 3 [Homo sapiens]
          Length = 774

 Score = 31.2 bits (69), Expect = 0.24
 Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 19  PRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKA-TD 77
           PR RPL AS PS     T    PG + +G     P            GL+   P+ A   
Sbjct: 707 PRGRPLSASQPSLPQRATGDGSPGRKGSGSERLPP-----------SGLLAKPPRTAQPP 755

Query: 78  RMPDPRPISRHGL 90
           R P P P +  GL
Sbjct: 756 RPPVPEPATPRGL 768


>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
          Length = 2803

 Score = 30.8 bits (68), Expect = 0.31
 Identities = 35/131 (26%), Positives = 43/131 (32%), Gaps = 24/131 (18%)

Query: 8    AAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLR--------------SNGRHSSSP 53
            A  GP   T  PR  P P+ +PS   P    R P L               S  R S SP
Sbjct: 2037 ALAGP---TVPPRPEPGPSMEPSLTPPAVPPRAPILSKGPSPPLNGNILSCSPDRRSPSP 2093

Query: 54   HRA----W--SAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREP 107
              +    W  S   ++LE      P+K       P PI   G     P T        + 
Sbjct: 2094 KESGRSHWDDSTSDSELEKGAREQPEKEAQSPSPPHPIPM-GSPTLWPETEAHVSPPLDS 2152

Query: 108  HAGPVSQCADY 118
            H GP     D+
Sbjct: 2153 HLGPARPSLDF 2163



 Score = 26.6 bits (57), Expect = 5.8
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 9/60 (15%)

Query: 18   LPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATD 77
            +P+ RPLP       AP++ A GP   +   H+ +P   +S  T + + +V +V + A +
Sbjct: 1846 VPKDRPLPP------APLSPAPGPPTPAPESHTPAP---FSWGTAEYDSVVAAVQEGAAE 1896


>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
          Length = 957

 Score = 30.8 bits (68), Expect = 0.31
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 23  PLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDP 82
           P P   PS     T   GPG  ++   +++   + S + T  EG   SVP  AT+ +  P
Sbjct: 190 PTPDEGPSTSVLPTPGEGPG--TSVPLAATEGLSTSVQATPDEGPSTSVPPTATEGLSTP 247

Query: 83  RPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCAD 117
            P +R       PST+  +  G  P    +   +D
Sbjct: 248 VPPTRDE----GPSTSVPATPGEGPSTSVLPAASD 278


>gi|226442736 ring finger protein 222 [Homo sapiens]
          Length = 220

 Score = 30.4 bits (67), Expect = 0.40
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 15  LTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSP 53
           L SL    PL AS P+W  P  +AR PG  S G+ +  P
Sbjct: 100 LDSLGHTNPLAASSPAWRPPPGQARPPG--SPGQSAQLP 136


>gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens]
          Length = 220

 Score = 30.4 bits (67), Expect = 0.40
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 15  LTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSP 53
           L SL    PL AS P+W  P  +AR PG  S G+ +  P
Sbjct: 100 LDSLGHTNPLAASSPAWRPPPGQARPPG--SPGQSAQLP 136


>gi|149773484 leucine rich repeat and fibronectin type III domain
           containing 1 [Homo sapiens]
          Length = 771

 Score = 30.4 bits (67), Expect = 0.40
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 17/85 (20%)

Query: 5   GVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGR----HSSSPHRAWSAE 60
           G   AP  +C+  LP   P PA+ P    P+TE     + + GR     S++  R  +AE
Sbjct: 377 GEATAPVEVCVVPLPLMAPPPAAPP----PLTEPGSSDIATPGRPGANDSAAERRLVAAE 432

Query: 61  TTQLEGLVESVPQKATDRMPDPRPI 85
            T    L+         R P  RP+
Sbjct: 433 LTSNSVLI---------RWPAQRPV 448


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 30.4 bits (67), Expect = 0.40
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 50  SSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPE---GRE 106
           S  P  A S    + + L  S P K + R PDP   ++ GL     + TFRS +   GR 
Sbjct: 70  SVPPAAAESPSMHRKQELDSSHPPKQSGRPPDPGRPAQPGLSKSRTTDTFRSEQKLPGRS 129

Query: 107 PHAGPVSQC---ADYKRRKKSS 125
           P    + +     D K   KSS
Sbjct: 130 PSTISLKESKSRTDLKEEHKSS 151



 Score = 29.3 bits (64), Expect = 0.90
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 2   ETPGVKAAPGPLCLTSLPRKRPLPASDPSW--GAPITEARGPGLRS 45
           E PG KA   P  +   P ++P PA  P+   G P   A+ PGL+S
Sbjct: 384 EQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQS 429


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 30.4 bits (67), Expect = 0.40
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 50  SSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPE---GRE 106
           S  P  A S    + + L  S P K + R PDP   ++ GL     + TFRS +   GR 
Sbjct: 70  SVPPAAAESPSMHRKQELDSSHPPKQSGRPPDPGRPAQPGLSKSRTTDTFRSEQKLPGRS 129

Query: 107 PHAGPVSQC---ADYKRRKKSS 125
           P    + +     D K   KSS
Sbjct: 130 PSTISLKESKSRTDLKEEHKSS 151



 Score = 29.3 bits (64), Expect = 0.90
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 2   ETPGVKAAPGPLCLTSLPRKRPLPASDPSW--GAPITEARGPGLRS 45
           E PG KA   P  +   P ++P PA  P+   G P   A+ PGL+S
Sbjct: 384 EQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQS 429


>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
           [Homo sapiens]
          Length = 3969

 Score = 30.0 bits (66), Expect = 0.53
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 18  LPRKRPLPASDPSWGAPITEARGPGLRSNGRHS---SSPHRAWSAETTQLEGLVESVPQK 74
           LP +R   +  P    P+  ++ P   SN R S   S   R++ + TT+    ++S PQ+
Sbjct: 499 LPEER---SDTPEVHPPLPISQSPENESNDRRSRRYSVSERSFGSRTTKKLSTLQSAPQQ 555

Query: 75  ATDRMPDP 82
            T   P P
Sbjct: 556 QTSSSPPP 563


>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
           sapiens]
          Length = 408

 Score = 29.3 bits (64), Expect = 0.90
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 4   PGVKAAPG---PLCLTSLPR----KRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRA 56
           PG   AP    P+   ++PR    + PLP+     G P      P LR  G  +  P  A
Sbjct: 76  PGRPLAPRARQPVPHRAVPRQGSLREPLPSRRGRRGPPGHAPPSPSLRRRGARALQPSAA 135

Query: 57  WSAETTQLEGL------VESVPQKATDRMPDPRPI 85
             A      GL         +P++    +PDP P+
Sbjct: 136 ARARARVPRGLRLHRPAHRGLPRRGLPSVPDPFPL 170


>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
           sapiens]
          Length = 408

 Score = 29.3 bits (64), Expect = 0.90
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 4   PGVKAAPG---PLCLTSLPR----KRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRA 56
           PG   AP    P+   ++PR    + PLP+     G P      P LR  G  +  P  A
Sbjct: 76  PGRPLAPRARQPVPHRAVPRQGSLREPLPSRRGRRGPPGHAPPSPSLRRRGARALQPSAA 135

Query: 57  WSAETTQLEGL------VESVPQKATDRMPDPRPI 85
             A      GL         +P++    +PDP P+
Sbjct: 136 ARARARVPRGLRLHRPAHRGLPRRGLPSVPDPFPL 170


>gi|21040275 AlkB homolog 3 [Homo sapiens]
          Length = 286

 Score = 29.3 bits (64), Expect = 0.90
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 18 LPRKRPLPASDPSWGAPITEAR--GPGLRSNGRHSSSPHRAWSAETTQLEG--LVESVPQ 73
          +  KR       +W AP+       P   +       P + W  +   L     V   PQ
Sbjct: 1  MEEKRRRARVQGAWAAPVKSQAIAQPATTAKSHLHQKPGQTWKNKEHHLSDREFVFKEPQ 60

Query: 74 KATDRMPDPRPISRHGLCAFHPSTT 98
          +   R P+PR I R G+     S T
Sbjct: 61 QVVRRAPEPRVIDREGVYEISLSPT 85


>gi|157502169 astacin-like metalloendopeptidase [Homo sapiens]
          Length = 431

 Score = 29.3 bits (64), Expect = 0.90
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 40  GPGLRSNGRHSSSPHRAWSAETTQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTF 99
           GP  R  G H+ S  R+ +  +  L+ L+E++   A  R PDP   S  G     P+   
Sbjct: 285 GPRPRGRGSHAHSTGRSPAPASLSLQRLLEAL--SAESRSPDPSGSSAGGQPV--PAGPG 340

Query: 100 RSPEGREPHA 109
            SP G E  A
Sbjct: 341 ESPHGWESPA 350


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 29.3 bits (64), Expect = 0.90
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 21/126 (16%)

Query: 2    ETPGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAET 61
            E P    A  P  L +L   +   +S  S  +  + +      S+   SSS   + S+ +
Sbjct: 2508 EPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSS------SSSSSSSSSSSSGSSSS 2561

Query: 62   TQLEGLVESVPQKATDRMPDPRPISRHGLCAFHPSTTFRSPEGREPHAGPVSQCADYKRR 121
                  +   P+ A  R+P P P  +  +            EGR P   P    A  KRR
Sbjct: 2562 DSEGSSLPVQPEVALKRVPSPTPAPKEAV-----------REGRPPEPTP----AKRKRR 2606

Query: 122  KKSSSS 127
              SSSS
Sbjct: 2607 SSSSSS 2612


>gi|110578663 hypothetical protein LOC203074 [Homo sapiens]
          Length = 352

 Score = 29.3 bits (64), Expect = 0.90
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 11  GPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVES 70
           GPL  T  P ++       SWG    E   PG+ +    S   +  W  + TQLEG   +
Sbjct: 252 GPLVCTPEPGEKWYQVGIISWGKSCGEKNTPGIYT----SLVNYNLWIEKVTQLEGRPFN 307

Query: 71  VPQKATD--RMPDPRPIS 86
             ++ T   + P   P+S
Sbjct: 308 AEKRRTSVKQKPMGSPVS 325


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 11/52 (21%)

Query: 4   PGVKAAPGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHR 55
           PG K  PGP      P+   +P      G       GPGL + G H   PHR
Sbjct: 196 PGPKQGPGP----GGPKGGKMPGGPKPGG-------GPGLSTPGGHPKPPHR 236


>gi|111185957 downstream of tyrosine kinase 7 [Homo sapiens]
          Length = 504

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 10  PGPLCLTSLPRKRPLPASDPSWGAPITEARGPGLRSNGRHSSSPHRAWSAETTQLEGLVE 69
           P  LCL       P   S PS G+P   A      S G+ S+     W    T+  GLV 
Sbjct: 408 PRSLCLA------PRDHSPPSQGSPGNSAARD---SGGQTSAGCPSGWLG--TRRRGLVM 456

Query: 70  SVPQKATDRMPDPRP 84
             PQ +   +P P P
Sbjct: 457 EAPQGSEATLPGPAP 471


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.129    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,988,802
Number of Sequences: 37866
Number of extensions: 394561
Number of successful extensions: 1294
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 1216
Number of HSP's gapped (non-prelim): 185
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.