Guide to the Human Genome
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Search of human proteins with 239755619

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]
         (261 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]           520   e-148
gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo ...   520   e-148
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ...   516   e-147
gi|58294160 breast carcinoma amplified sequence 4 isoform a [Hom...    56   4e-08
gi|148839316 NIMA-related kinase 4 [Homo sapiens]                      54   1e-07
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa...    51   1e-06
gi|6005810 mitogen-activated protein kinase kinase kinase kinase...    50   2e-06
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi...    50   3e-06
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi...    50   3e-06
gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens]                50   3e-06
gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens]                50   3e-06
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]        50   3e-06
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ...    48   1e-05
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]     48   1e-05
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]          47   2e-05
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]          47   2e-05
gi|40807368 potassium channel regulator isoform 2 [Homo sapiens]       46   3e-05
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s...    46   3e-05
gi|187608508 centromere protein L isoform 1 [Homo sapiens]             45   5e-05
gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]     45   5e-05
gi|118442834 RPGRIP1-like isoform a [Homo sapiens]                     45   8e-05
gi|61969666 arginine-fifty homeobox [Homo sapiens]                     45   8e-05
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi...    44   2e-04
gi|170932471 hypothetical protein LOC79703 [Homo sapiens]              43   3e-04
gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens]            42   5e-04
gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]      42   5e-04
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]             41   0.001
gi|24497440 interleukin 12 receptor, beta 1 isoform 2 precursor ...    41   0.001
gi|94680985 cyclin J-like [Homo sapiens]                               41   0.001
gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens]      40   0.002

>gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 261

 Score =  520 bits (1339), Expect = e-148
 Identities = 261/261 (100%), Positives = 261/261 (100%)

Query: 1   MCKDTEGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS 60
           MCKDTEGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS
Sbjct: 1   MCKDTEGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS 60

Query: 61  DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE 120
           DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE
Sbjct: 61  DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE 120

Query: 121 IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH 180
           IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH
Sbjct: 121 IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH 180

Query: 181 GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT 240
           GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT
Sbjct: 181 GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT 240

Query: 241 VNEAVALAVPLGGHLPAEHGA 261
           VNEAVALAVPLGGHLPAEHGA
Sbjct: 241 VNEAVALAVPLGGHLPAEHGA 261


>gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo
           sapiens]
          Length = 261

 Score =  520 bits (1339), Expect = e-148
 Identities = 261/261 (100%), Positives = 261/261 (100%)

Query: 1   MCKDTEGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS 60
           MCKDTEGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS
Sbjct: 1   MCKDTEGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS 60

Query: 61  DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE 120
           DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE
Sbjct: 61  DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE 120

Query: 121 IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH 180
           IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH
Sbjct: 121 IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH 180

Query: 181 GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT 240
           GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT
Sbjct: 181 GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT 240

Query: 241 VNEAVALAVPLGGHLPAEHGA 261
           VNEAVALAVPLGGHLPAEHGA
Sbjct: 241 VNEAVALAVPLGGHLPAEHGA 261


>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
           sapiens]
          Length = 261

 Score =  516 bits (1329), Expect = e-147
 Identities = 260/261 (99%), Positives = 260/261 (99%)

Query: 1   MCKDTEGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS 60
           MCKDTEGLA YPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS
Sbjct: 1   MCKDTEGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQS 60

Query: 61  DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE 120
           DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE
Sbjct: 61  DFQYLFHEDLEAVDLLVGGHHPEPLEVLLGVLLLWQALHIGHPVQSQVVGVLQVAGDGGE 120

Query: 121 IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH 180
           IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH
Sbjct: 121 IAIGAVEELRAKELEEEAGGAEDVGVEDLHAGRGEAVDLGCLAHSEVDRLHTLVQCDVEH 180

Query: 181 GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT 240
           GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT
Sbjct: 181 GILLGLGELHFLLLQGLNQGLHLVEVGLPAEQPHLLEVLRQVKVGGPQEVEDIAEHFAVT 240

Query: 241 VNEAVALAVPLGGHLPAEHGA 261
           VNEAVALAVPLGGHLPAEHGA
Sbjct: 241 VNEAVALAVPLGGHLPAEHGA 261


>gi|58294160 breast carcinoma amplified sequence 4 isoform a [Homo
           sapiens]
          Length = 211

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 28/38 (73%), Positives = 31/38 (81%)

Query: 7   GLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
           GL  +  +E SGTI ARCNLRL GSSDSPASASQVAG+
Sbjct: 157 GLPSFRNVECSGTIPARCNLRLPGSSDSPASASQVAGI 194


>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
          Length = 841

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 28/39 (71%), Positives = 32/39 (82%)

Query: 6   EGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
           + LA  P+LE SGTI A  NLRLLGSSDSPASAS+VAG+
Sbjct: 456 QSLALSPKLECSGTILAHSNLRLLGSSDSPASASRVAGI 494


>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
           sapiens]
          Length = 296

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 33/72 (45%), Positives = 38/72 (52%)

Query: 3   KDTEGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQSDF 62
           K+  G    PRLE SG I ARCNL  LGSSD P SASQVA +       ID     + + 
Sbjct: 201 KNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENI 260

Query: 63  QYLFHEDLEAVD 74
             L  E LEA +
Sbjct: 261 GDLIQETLEAFE 272


>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
           isoform 2 [Homo sapiens]
          Length = 833

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 12  PRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSM 47
           PRLE SGTIS  CNL L GSS+SPASAS+VAG+  +
Sbjct: 798 PRLECSGTISPHCNLLLPGSSNSPASASRVAGITGL 833


>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
          sapiens]
          Length = 312

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 24/32 (75%), Positives = 28/32 (87%)

Query: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
          RLE +GTISA CNL L GSSDSPAS+S+VAG+
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGI 80


>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
          sapiens]
          Length = 341

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 24/32 (75%), Positives = 28/32 (87%)

Query: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
          RLE +GTISA CNL L GSSDSPAS+S+VAG+
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGI 80


>gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens]
          Length = 600

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 24/31 (77%), Positives = 26/31 (83%)

Query: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAG 43
          RLE+SGTI A CN RLLGS+DS ASASQV G
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASASQVTG 63


>gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens]
          Length = 619

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 24/31 (77%), Positives = 26/31 (83%)

Query: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAG 43
          RLE+SGTI A CN RLLGS+DS ASASQV G
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASASQVTG 63


>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
          Length = 638

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 27/44 (61%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAG-LQSMWVRRIDAE 55
          RLE SG ISA C+L L GSSDSPASASQ+AG   ++W  +  AE
Sbjct: 8  RLECSGAISAHCSLHLPGSSDSPASASQIAGTTDAIWNEQEKAE 51


>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
           sapiens]
          Length = 511

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 25/37 (67%), Positives = 28/37 (75%)

Query: 8   LAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
           LA  PRLE SG ISA CN  L GSS+SPA AS+VAG+
Sbjct: 138 LALSPRLECSGKISAHCNPHLQGSSNSPAQASRVAGI 174


>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
          Length = 475

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 25/35 (71%), Positives = 25/35 (71%)

Query: 13  RLEFSGTISARCNLRLLGSSDSPASASQVAGLQSM 47
           RLE SG I A CNLRL GS DSPASASQ AG   M
Sbjct: 431 RLECSGMILAHCNLRLPGSRDSPASASQAAGTTGM 465


>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
          Length = 226

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 25/35 (71%), Positives = 27/35 (77%)

Query: 6  EGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQ 40
          E LA  PRLE +G ISA CNL L GSS+SPASASQ
Sbjct: 57 ESLALSPRLERNGMISAHCNLCLTGSSNSPASASQ 91


>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
          Length = 629

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 23/38 (60%), Positives = 27/38 (71%)

Query: 6   EGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
           EGL  +PRLE S TI+A C+L LL SS+ P S SQV G
Sbjct: 584 EGLTLWPRLECSSTITAHCSLNLLDSSNPPTSTSQVVG 621


>gi|40807368 potassium channel regulator isoform 2 [Homo sapiens]
          Length = 229

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 13  RLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWV 49
           RL  +G ISA  NLRL GSSDSPASAS+VAG+  M++
Sbjct: 193 RLVCNGVISAHHNLRLWGSSDSPASASRVAGITGMFL 229


>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
           sapiens]
          Length = 1151

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query: 12  PRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
           PRLE SGT+ A C+L+LL SS+ P SASQVAG
Sbjct: 442 PRLECSGTVIAHCSLKLLDSSNPPTSASQVAG 473


>gi|187608508 centromere protein L isoform 1 [Homo sapiens]
          Length = 390

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 24/38 (63%), Positives = 26/38 (68%)

Query: 6   EGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
           +GL   PRLE+SGTI   CNL LLGSSD    A QVAG
Sbjct: 140 QGLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAG 177


>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo
          sapiens]
          Length = 183

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 28/53 (52%), Positives = 31/53 (58%)

Query: 12 PRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQSDFQY 64
          PRLE SG ISA CNL LL SSDS ASAS++     M  R   A  I  S  +Y
Sbjct: 30 PRLEPSGVISAHCNLHLLASSDSSASASRLCQRVMMPSRTNLATGIPSSKVKY 82


>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
          Length = 1315

 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 6    EGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGL-------QSMWVRRIDAEAIA 58
            + LA  P L  S  ISA CN RL GSSD PASASQV G+       Q     RI+  A++
Sbjct: 1098 QSLALSPGLGCSSAISAHCNFRLPGSSDFPASASQVDGITGACHHTQPSEKIRIEIIALS 1157

Query: 59   QSDFQYLFHEDLE 71
             +D Q    + ++
Sbjct: 1158 LNDSQVTMDDTIQ 1170


>gi|61969666 arginine-fifty homeobox [Homo sapiens]
          Length = 315

 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 5/61 (8%)

Query: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAGLQSMWVRRIDAEAIAQSDFQYLFHEDLEA 72
          +LE SGT+SA C+L L GS+D P SAS+VA   +  +RR   E   ++ F +  +E+LEA
Sbjct: 41 KLECSGTVSAYCSLNLPGSTDPPTSASRVAATTA--IRRRHKE---RTSFTHQQYEELEA 95

Query: 73 V 73
          +
Sbjct: 96 L 96


>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
           sapiens]
          Length = 167

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 22/34 (64%), Positives = 25/34 (73%)

Query: 6   EGLAPYPRLEFSGTISARCNLRLLGSSDSPASAS 39
           + LA  P+LE SG + A CNL LLGSS SPASAS
Sbjct: 134 QNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167


>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
          Length = 677

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 21/33 (63%), Positives = 24/33 (72%)

Query: 12  PRLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
           PR E SG +SA CNL L GSSDS AS  +VAG+
Sbjct: 113 PRPECSGAVSAHCNLHLPGSSDSHASVPRVAGI 145


>gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens]
          Length = 306

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 22/31 (70%), Positives = 23/31 (74%)

Query: 12 PRLEFSGTISARCNLRLLGSSDSPASASQVA 42
          PRLE +G  SA  N RL GS DSPASASQVA
Sbjct: 14 PRLEHNGMTSAHHNFRLPGSRDSPASASQVA 44


>gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]
          Length = 148

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 22/38 (57%), Positives = 25/38 (65%)

Query: 6   EGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAG 43
           + LA  PRLE +G ISA C L L  SSDSP S S+V G
Sbjct: 71  KSLAVSPRLECTGAISAHCKLCLSDSSDSPTSPSRVGG 108


>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
          Length = 135

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 23/32 (71%), Positives = 23/32 (71%)

Query: 8   LAPYPRLEFSGTISARCNLRLLGSSDSPASAS 39
           LA  PRLE SG I A CNL LLGSSDS A AS
Sbjct: 104 LALLPRLECSGVILAHCNLCLLGSSDSLALAS 135


>gi|24497440 interleukin 12 receptor, beta 1 isoform 2 precursor
           [Homo sapiens]
          Length = 381

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 20/27 (74%), Positives = 22/27 (81%)

Query: 18  GTISARCNLRLLGSSDSPASASQVAGL 44
           G ISA CNLRL  S DSPASAS+VAG+
Sbjct: 342 GMISAHCNLRLPDSRDSPASASRVAGI 368


>gi|94680985 cyclin J-like [Homo sapiens]
          Length = 435

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 20/27 (74%), Positives = 22/27 (81%)

Query: 12  PRLEFSGTISARCNLRLLGSSDSPASA 38
           PRL+ SG ISA CNL L GSS+SPASA
Sbjct: 101 PRLKCSGMISAHCNLHLPGSSNSPASA 127


>gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens]
          Length = 940

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/24 (87%), Positives = 21/24 (87%)

Query: 20 ISARCNLRLLGSSDSPASASQVAG 43
          ISA CNLRLL SSDS ASASQVAG
Sbjct: 2  ISAHCNLRLLCSSDSSASASQVAG 25


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,576,526
Number of Sequences: 37866
Number of extensions: 483742
Number of successful extensions: 1234
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 70
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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