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Search of human proteins with 239755597
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755597 PREDICTED: similar to HIG1 domain family, member
1A [Homo sapiens]
(124 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755597 PREDICTED: similar to HIG1 domain family, member 1A... 247 2e-66
gi|239750094 PREDICTED: similar to HIG1 domain family, member 1A... 247 2e-66
gi|239744403 PREDICTED: hypothetical protein XP_002343136 [Homo ... 247 2e-66
gi|153085461 HIG1 domain family, member 1A isoform a [Homo sapiens] 179 6e-46
gi|153085470 HIG1 domain family, member 1A isoform b [Homo sapiens] 168 9e-43
gi|153085463 HIG1 domain family, member 1A isoform b [Homo sapiens] 168 9e-43
gi|157817101 HIG1 domain family, member 1C [Homo sapiens] 104 2e-23
gi|7706543 HIG1 hypoxia inducible domain family, member 1B [Homo... 85 2e-17
gi|20270389 HIG1 hypoxia inducible domain family, member 2A [Hom... 62 1e-10
gi|13129044 phosducin-like 3 [Homo sapiens] 40 4e-04
gi|169202111 PREDICTED: similar to HIG1 domain family, member 2A... 33 0.073
gi|51944950 phosducin-like 2 [Homo sapiens] 28 1.4
gi|31542673 chromatin modifying protein 6 [Homo sapiens] 28 2.4
gi|55953087 G protein-binding protein CRFG [Homo sapiens] 28 2.4
gi|30794264 glycosylphosphatidylinositol anchored high density l... 27 5.2
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 27 5.2
gi|122937388 MAX gene associated [Homo sapiens] 26 6.9
gi|33354279 hypothetical protein LOC55425 [Homo sapiens] 26 6.9
gi|110349719 titin isoform N2-A [Homo sapiens] 26 8.9
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 26 8.9
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 26 8.9
>gi|239755597 PREDICTED: similar to HIG1 domain family, member 1A
[Homo sapiens]
Length = 124
Score = 247 bits (630), Expect = 2e-66
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MNLEELEDHVDEFDEEDEHAIEIREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKETPL 60
MNLEELEDHVDEFDEEDEHAIEIREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKETPL
Sbjct: 1 MNLEELEDHVDEFDEEDEHAIEIREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKETPL 60
Query: 61 VPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVGAMTIGMGYSMYREFWA 120
VPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVGAMTIGMGYSMYREFWA
Sbjct: 61 VPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVGAMTIGMGYSMYREFWA 120
Query: 121 KPKP 124
KPKP
Sbjct: 121 KPKP 124
>gi|239750094 PREDICTED: similar to HIG1 domain family, member 1A
[Homo sapiens]
Length = 124
Score = 247 bits (630), Expect = 2e-66
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MNLEELEDHVDEFDEEDEHAIEIREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKETPL 60
MNLEELEDHVDEFDEEDEHAIEIREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKETPL
Sbjct: 1 MNLEELEDHVDEFDEEDEHAIEIREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKETPL 60
Query: 61 VPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVGAMTIGMGYSMYREFWA 120
VPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVGAMTIGMGYSMYREFWA
Sbjct: 61 VPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVGAMTIGMGYSMYREFWA 120
Query: 121 KPKP 124
KPKP
Sbjct: 121 KPKP 124
>gi|239744403 PREDICTED: hypothetical protein XP_002343136 [Homo
sapiens]
Length = 124
Score = 247 bits (630), Expect = 2e-66
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MNLEELEDHVDEFDEEDEHAIEIREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKETPL 60
MNLEELEDHVDEFDEEDEHAIEIREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKETPL
Sbjct: 1 MNLEELEDHVDEFDEEDEHAIEIREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKETPL 60
Query: 61 VPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVGAMTIGMGYSMYREFWA 120
VPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVGAMTIGMGYSMYREFWA
Sbjct: 61 VPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVGAMTIGMGYSMYREFWA 120
Query: 121 KPKP 124
KPKP
Sbjct: 121 KPKP 124
>gi|153085461 HIG1 domain family, member 1A isoform a [Homo sapiens]
Length = 107
Score = 179 bits (453), Expect = 6e-46
Identities = 86/102 (84%), Positives = 94/102 (92%)
Query: 23 IREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKETPLVPVGIAGFAALVTYGLYKLKSR 82
+ EILQA+ +STDT VSL SY+E QGSKLIRKAKE P VPVGIAGFAA+V YGLYKLKSR
Sbjct: 6 VEEILQAITMSTDTGVSLPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSR 65
Query: 83 GNTQMSLHLIHMRVAAQGFVVGAMTIGMGYSMYREFWAKPKP 124
GNT+MS+HLIHMRVAAQGFVVGAMT+GMGYSMYREFWAKPKP
Sbjct: 66 GNTKMSIHLIHMRVAAQGFVVGAMTVGMGYSMYREFWAKPKP 107
>gi|153085470 HIG1 domain family, member 1A isoform b [Homo sapiens]
Length = 93
Score = 168 bits (426), Expect = 9e-43
Identities = 81/93 (87%), Positives = 87/93 (93%)
Query: 32 ISTDTDVSLSSYDEAQGSKLIRKAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHL 91
+STDT VSL SY+E QGSKLIRKAKE P VPVGIAGFAA+V YGLYKLKSRGNT+MS+HL
Sbjct: 1 MSTDTGVSLPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHL 60
Query: 92 IHMRVAAQGFVVGAMTIGMGYSMYREFWAKPKP 124
IHMRVAAQGFVVGAMT+GMGYSMYREFWAKPKP
Sbjct: 61 IHMRVAAQGFVVGAMTVGMGYSMYREFWAKPKP 93
>gi|153085463 HIG1 domain family, member 1A isoform b [Homo sapiens]
Length = 93
Score = 168 bits (426), Expect = 9e-43
Identities = 81/93 (87%), Positives = 87/93 (93%)
Query: 32 ISTDTDVSLSSYDEAQGSKLIRKAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHL 91
+STDT VSL SY+E QGSKLIRKAKE P VPVGIAGFAA+V YGLYKLKSRGNT+MS+HL
Sbjct: 1 MSTDTGVSLPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHL 60
Query: 92 IHMRVAAQGFVVGAMTIGMGYSMYREFWAKPKP 124
IHMRVAAQGFVVGAMT+GMGYSMYREFWAKPKP
Sbjct: 61 IHMRVAAQGFVVGAMTVGMGYSMYREFWAKPKP 93
>gi|157817101 HIG1 domain family, member 1C [Homo sapiens]
Length = 97
Score = 104 bits (259), Expect = 2e-23
Identities = 48/75 (64%), Positives = 65/75 (86%)
Query: 44 DEAQGSKLIRKAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVV 103
DE Q S+LIRK++++P VP+GIAGF +V+ GLYKLK R + +MS+HLIHMRVAAQGFVV
Sbjct: 12 DEGQLSRLIRKSRDSPFVPIGIAGFVTVVSCGLYKLKYRRDQKMSIHLIHMRVAAQGFVV 71
Query: 104 GAMTIGMGYSMYREF 118
GA+T+G+ YSMY+++
Sbjct: 72 GAVTLGVLYSMYKDY 86
>gi|7706543 HIG1 hypoxia inducible domain family, member 1B [Homo
sapiens]
Length = 99
Score = 84.7 bits (208), Expect = 2e-17
Identities = 36/75 (48%), Positives = 55/75 (73%)
Query: 44 DEAQGSKLIRKAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVV 103
++ KL+RK +E+PLVP+G+ G + Y +Y+L+SRG+T+MS+HLIH RVAAQ V
Sbjct: 14 EDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAV 73
Query: 104 GAMTIGMGYSMYREF 118
GA+ +G Y+MY ++
Sbjct: 74 GAIMLGAVYTMYSDY 88
>gi|20270389 HIG1 hypoxia inducible domain family, member 2A [Homo
sapiens]
Length = 106
Score = 61.6 bits (148), Expect = 1e-10
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 45 EAQGSKLIRKAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVG 104
E+ K +RK +E P+VP+G AA +TYGLY RGN+Q S ++ R+AAQGF V
Sbjct: 33 ESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSF-HRGNSQRSQLMMRTRIAAQGFTVA 91
Query: 105 AMTIGM 110
A+ +G+
Sbjct: 92 AILLGL 97
>gi|13129044 phosducin-like 3 [Homo sapiens]
Length = 239
Score = 40.4 bits (93), Expect = 4e-04
Identities = 18/23 (78%), Positives = 20/23 (86%)
Query: 1 MNLEELEDHVDEFDEEDEHAIEI 23
M LEELEDH DEF+EEDE AIE+
Sbjct: 51 MTLEELEDHEDEFNEEDERAIEM 73
>gi|169202111 PREDICTED: similar to HIG1 domain family, member 2A
[Homo sapiens]
Length = 103
Score = 32.7 bits (73), Expect = 0.073
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 54 KAKETPLVPVGIAGFAALVTYGLYKLKSRGNTQMSLHLIHMRVAAQGFVVGAMTIGMGYS 113
K + P VP+G A +TY L+ +G++Q + + QGF V A+ + + +S
Sbjct: 41 KTCKNPTVPIGCLSKAITLTYSLFYCFYQGHSQCFQLMTRTCITTQGFTVTAILLHLLWS 100
Query: 114 M 114
+
Sbjct: 101 L 101
>gi|51944950 phosducin-like 2 [Homo sapiens]
Length = 241
Score = 28.5 bits (62), Expect = 1.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 1 MNLEELEDHVDEFDEEDEHAIE 22
M L +L++ DEFDEED A+E
Sbjct: 49 MTLAQLKEAEDEFDEEDMQAVE 70
>gi|31542673 chromatin modifying protein 6 [Homo sapiens]
Length = 201
Score = 27.7 bits (60), Expect = 2.4
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 1 MNLEELEDHVDEFDEEDEHAIEIREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKETPL 60
M++EE+E +DE E E+ +I E+L D D L S + ++ E P
Sbjct: 118 MSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEEL-----SAITQEQIELPE 172
Query: 61 VP 62
VP
Sbjct: 173 VP 174
>gi|55953087 G protein-binding protein CRFG [Homo sapiens]
Length = 634
Score = 27.7 bits (60), Expect = 2.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 4 EELEDHVDEFDE----EDEHAIEIREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKE 57
EEL E+D EDE +EIR++ + + + S QG ++ R AK+
Sbjct: 457 EELRTAAGEYDSVSESEDEEMLEIRQLAKQIREKKKLKILESKEKNTQGPRMPRTAKK 514
>gi|30794264 glycosylphosphatidylinositol anchored high density
lipoprotein binding protein 1 [Homo sapiens]
Length = 184
Score = 26.6 bits (57), Expect = 5.2
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 4 EELEDH-VDEFDEEDEHAIEIRE 25
EE EDH D++DEEDE +E E
Sbjct: 28 EEDEDHGPDDYDEEDEDEVEEEE 50
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 26.6 bits (57), Expect = 5.2
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 1 MNLEELEDHVDEFDEEDEHA-IEIREILQAVIISTDT 36
++ E+L+ + E +EE E +RE+ QA+++S DT
Sbjct: 2130 LSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADT 2166
>gi|122937388 MAX gene associated [Homo sapiens]
Length = 3114
Score = 26.2 bits (56), Expect = 6.9
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 2 NLEELEDHVDEFDEEDEHAIEIREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKE 57
+LE+ DH+DE +E ++ + I + TD +E G++ + +KE
Sbjct: 2073 SLEDRGDHLDEECLPEEGCATVKPSEHSCITGSHTDQDYKDVNEEYGARNRKSSKE 2128
>gi|33354279 hypothetical protein LOC55425 [Homo sapiens]
Length = 340
Score = 26.2 bits (56), Expect = 6.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 35 DTDVSLSSYDEAQGSKLIRKAKE 57
D D+ ++ +DEAQ LI+K++E
Sbjct: 304 DKDLKVNRFDEAQKKALIKKSRE 326
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 25.8 bits (55), Expect = 8.9
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 5 ELEDHVDEFDEEDEHAIEIREILQAVIISTDTDVSLSSYDEAQGSKLIRKAKETPLVP 62
E E+ DE +EE E A + RE++Q V Y+E+ K+ K E P
Sbjct: 9128 EREEGYDEGEEEWEEAYQEREVIQ---------VQKEVYEESHERKVPAKVPEKKAPP 9176
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 25.8 bits (55), Expect = 8.9
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 3 LEELEDHVDEFDEEDEHAIEIREILQA-----VIISTDTDVSLSS 42
+E++ DH +FD+++ H +EI E A + +TD D++++S
Sbjct: 123 IEDVNDHAPQFDKKEIH-LEIFESASAGTRLSLDPATDPDININS 166
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 25.8 bits (55), Expect = 8.9
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 3 LEELEDHVDEFDEEDEHAIEIREILQA-----VIISTDTDVSLSS 42
+E++ DH +FD+++ H +EI E A + +TD D++++S
Sbjct: 123 IEDVNDHAPQFDKKEIH-LEIFESASAGTRLSLDPATDPDININS 166
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,400,283
Number of Sequences: 37866
Number of extensions: 158428
Number of successful extensions: 605
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 22
length of query: 124
length of database: 18,247,518
effective HSP length: 89
effective length of query: 35
effective length of database: 14,877,444
effective search space: 520710540
effective search space used: 520710540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.