Guide to the Human Genome
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Name: LOC100292788 Sequence: fasta or formatted (209aa) NCBI GI: 239755547
Description:

PREDICTED: similar to hCG2040524

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         14           1
 C cysteine            1.4          3           2
 D aspartate           6.2         13           1
 E glutamate          12.0         25           2
 F phenylalanine       2.4          5           1
 G glycine             4.3          9           2
 H histidine           0.5          1           1
 I isoleucine          3.8          8           2
 K lysine              6.2         13           2
 L leucine            11.0         23           2
 M methionine          1.4          3           1
 N asparagine          3.3          7           1
 P proline             6.2         13           2
 Q glutamine           8.6         18           1
 R arginine            6.7         14           1
 S serine              7.2         15           2
 T threonine           2.9          6           2
 V valine              5.3         11           2
 W tryptophan          1.9          4           1
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040524 
LOC100289918          1.000   PREDICTED: hypothetical protein XP_002347262 
LOC100289201          1.000   PREDICTED: hypothetical protein XP_002343091 
PLEKHA6               0.220   phosphoinositol 3-phosphate-binding protein-3 
LOC402160             0.020   PREDICTED: similar to hCG18094 
MLL2                  0.020   myeloid/lymphoid or mixed-lineage leukemia 2 
BAT2D1                0.020   HBxAg transactivated protein 2 
DZIP1L                0.020   DAZ interacting protein 1-like 
PCNT                  0.018   pericentrin 
LOC402160             0.018   PREDICTED: similar to hCG18094 
LOC402160             0.018   PREDICTED: similar to hCG18094 
TRIP11                0.015   thyroid hormone receptor interactor 11 
SMC6                  0.015   SMC6 protein 
SMC6                  0.015   SMC6 protein 
LOC283685             0.015   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TATDN2                0.013   TatD DNase domain containing 2 
CCDC18                0.013   sarcoma antigen NY-SAR-41 
STMN4                 0.013   stathmin-like 4 
MDN1                  0.013   MDN1, midasin homolog 
OGN                   0.013   osteoglycin preproprotein 
OGN                   0.013   osteoglycin preproprotein 
ZFAT                  0.013   zinc finger protein 406 isoform ZFAT-1 
ZFAT                  0.013   zinc finger protein 406 isoform TR-ZFAT 
TTN                   0.010   titin isoform N2-A 
TTN                   0.010   titin isoform novex-2 
TTN                   0.010   titin isoform novex-1 
TTN                   0.010   titin isoform N2-B 
KIF7                  0.010   kinesin family member 7 
POLR3D                0.010   polymerase (RNA) III (DNA directed) polypeptide D [H...
PLEKHA4               0.008   pleckstrin homology domain containing family A memb...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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