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Search of human proteins with 239755536
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755536 PREDICTED: hypothetical protein [Homo sapiens]
(219 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755536 PREDICTED: hypothetical protein [Homo sapiens] 438 e-123
gi|239749998 PREDICTED: hypothetical protein XP_002347249 [Homo ... 438 e-123
gi|239744309 PREDICTED: hypothetical protein XP_002343114 [Homo ... 438 e-123
gi|41281709 nuclear factor of kappa light polypeptide gene enhan... 33 0.19
gi|239755499 PREDICTED: hypothetical protein [Homo sapiens] 32 0.55
gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens] 31 0.72
gi|38348368 hypothetical protein LOC374872 [Homo sapiens] 31 0.72
gi|239757116 PREDICTED: hypothetical protein [Homo sapiens] 31 0.94
gi|239751619 PREDICTED: hypothetical protein [Homo sapiens] 31 0.94
gi|169213518 PREDICTED: hypothetical protein [Homo sapiens] 31 0.94
gi|124378039 SEC16 homolog A [Homo sapiens] 30 2.1
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 30 2.1
gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens] 30 2.1
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 30 2.1
gi|51873034 F-box and leucine-rich repeat protein 9 [Homo sapiens] 29 2.7
gi|16306591 F-box and leucine-rich repeat protein 9 [Homo sapiens] 29 2.7
gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo ... 28 4.7
gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo ... 28 4.7
gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo ... 28 4.7
gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo ... 28 4.7
gi|194272180 plexin B1 [Homo sapiens] 28 4.7
gi|40254442 plexin B1 [Homo sapiens] 28 4.7
gi|31543535 R3H domain containing 1 [Homo sapiens] 28 4.7
gi|4502745 cyclin-dependent kinase 8 [Homo sapiens] 28 4.7
gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens] 28 4.7
gi|6912540 nucleotide binding protein 2 (MinD homolog, E. coli) ... 28 4.7
gi|126273519 exonuclease GOR [Homo sapiens] 28 4.7
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|40316918 NOL1/NOP2/Sun domain family 4 protein [Homo sapiens] 28 6.1
gi|32129214 neuronal calcium-binding protein 2 [Homo sapiens] 28 6.1
>gi|239755536 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 438 bits (1127), Expect = e-123
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS 60
MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS
Sbjct: 1 MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS 60
Query: 61 EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL 120
EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL
Sbjct: 61 EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL 120
Query: 121 LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP 180
LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP
Sbjct: 121 LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP 180
Query: 181 GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR 219
GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR
Sbjct: 181 GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR 219
>gi|239749998 PREDICTED: hypothetical protein XP_002347249 [Homo
sapiens]
Length = 219
Score = 438 bits (1127), Expect = e-123
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS 60
MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS
Sbjct: 1 MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS 60
Query: 61 EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL 120
EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL
Sbjct: 61 EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL 120
Query: 121 LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP 180
LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP
Sbjct: 121 LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP 180
Query: 181 GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR 219
GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR
Sbjct: 181 GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR 219
>gi|239744309 PREDICTED: hypothetical protein XP_002343114 [Homo
sapiens]
Length = 219
Score = 438 bits (1127), Expect = e-123
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS 60
MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS
Sbjct: 1 MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS 60
Query: 61 EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL 120
EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL
Sbjct: 61 EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL 120
Query: 121 LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP 180
LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP
Sbjct: 121 LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP 180
Query: 181 GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR 219
GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR
Sbjct: 181 GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR 219
>gi|41281709 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, delta [Homo sapiens]
Length = 313
Score = 33.1 bits (74), Expect = 0.19
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 20 VQCLLQQGPGVDQHSQKVLVEPALLPAVLFLA---LLELALQLSEGFVRVGVGIPDLHAP 76
V LLQ G + SQ++ +L + A L++L L+L G +R V + H
Sbjct: 189 VHMLLQMG--ANHTSQEIKSNKTVLHLAVQAANPTLVQLLLELPRGDLRTFVNMK-AHGN 245
Query: 77 SILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQ 117
+ LH+AA LP G AQ+A L GA P + + E +
Sbjct: 246 TALHMAAA----LPPGPAQEAIVRHLLAAGADPTLRNLENE 282
>gi|239755499 PREDICTED: hypothetical protein [Homo sapiens]
Length = 516
Score = 31.6 bits (70), Expect = 0.55
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 32/159 (20%)
Query: 33 HSQKVLVEPALLPAVLFLALLELALQLS---EGFV-RVGVGIPDLHAPSILHLAAQHGE- 87
H VL +L A F +++ +L+ +GF+ + +GI A + H A +HG
Sbjct: 151 HGHVVLAHGPVLQAPAFAIVVDKLCRLAGEEQGFLAHLDLGIEAAQAAA--HAALEHGVI 208
Query: 88 ---------------LLPQGEAQQA-----ANLAPLPLGAAPVVTHPEEQLA----LLGV 123
LL EAQ+ A+LA LG P P+ LA L+ +
Sbjct: 209 IVVGVAQGLLEALQGLLEDAEAQEGIAHAQADLAS-ELGTCPGTRQPKAGLAVGDGLVKL 267
Query: 124 IVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETH 162
LL+ +V +Q +G L + G +++ +++ TH
Sbjct: 268 AQLLVAACQVQVALQEEVGILQLPGRVDLDHSELHTATH 306
>gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens]
Length = 416
Score = 31.2 bits (69), Expect = 0.72
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 186 PRHKEGSVFASQRLPETAAPAAAQDAPTLAP 216
P H G+ A+ TAAPA+ PTLAP
Sbjct: 188 PTHAPGTTAAAHNTTRTAAPASTVPGPTLAP 218
>gi|38348368 hypothetical protein LOC374872 [Homo sapiens]
Length = 473
Score = 31.2 bits (69), Expect = 0.72
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 28 PGVDQHS---QKVLVEPALLPAVLFLALLELALQLSEGFVRVGVGIPDLHAPSILHLAAQ 84
P + HS + V PA LPA L + L G+ + DLH+P +H A
Sbjct: 89 PFLGSHSVDKSQAAVGPACLPAELTFGPADAPL---------GLSLRDLHSPEAVHTALA 139
Query: 85 HGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLALL 121
+L QG A L +G P HP LL
Sbjct: 140 ARQL--QGLRTIYARLRARLMGGHPGPCHPGHSFRLL 174
>gi|239757116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 497
Score = 30.8 bits (68), Expect = 0.94
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 85 HGELLPQGEAQ--QAANLAPLPLGAAPVVTHPEEQLALL----GVIVLLIVPIGHEVVVQ 138
H L PQ + Q QAA L + G + P ALL G + + +V HE V
Sbjct: 415 HAGLAPQQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVA 474
Query: 139 SPIGHLWV 146
P+GHL V
Sbjct: 475 VPVGHLQV 482
>gi|239751619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 497
Score = 30.8 bits (68), Expect = 0.94
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 85 HGELLPQGEAQ--QAANLAPLPLGAAPVVTHPEEQLALL----GVIVLLIVPIGHEVVVQ 138
H L PQ + Q QAA L + G + P ALL G + + +V HE V
Sbjct: 415 HAGLAPQQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVA 474
Query: 139 SPIGHLWV 146
P+GHL V
Sbjct: 475 VPVGHLQV 482
>gi|169213518 PREDICTED: hypothetical protein [Homo sapiens]
Length = 497
Score = 30.8 bits (68), Expect = 0.94
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 85 HGELLPQGEAQ--QAANLAPLPLGAAPVVTHPEEQLALL----GVIVLLIVPIGHEVVVQ 138
H L PQ + Q QAA L + G + P ALL G + + +V HE V
Sbjct: 415 HAGLAPQQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVA 474
Query: 139 SPIGHLWV 146
P+GHL V
Sbjct: 475 VPVGHLQV 482
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 29.6 bits (65), Expect = 2.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 16 PHRDVQCLLQQGPGVDQHSQKVLVEPALLPA 46
PH +L QGPG +QHS ++ PA LP+
Sbjct: 248 PHFPTPSILHQGPGHEQHS-PLVAPPAALPS 277
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 29.6 bits (65), Expect = 2.1
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 162 HAEELQKHHSGYSGWPGTPGGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAP 216
H+EE HSG PG G P H SVF + P+T+ +A T P
Sbjct: 141 HSEESTVSHSG----PGATGTTLFPSHSATSVFVGE--PKTSPITSASMETTALP 189
>gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]
Length = 861
Score = 29.6 bits (65), Expect = 2.1
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 162 HAEELQKHHSGYSGWPGTPGGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAP 216
H+EE HSG PG G P H SVF + P+T+ +A T P
Sbjct: 76 HSEESTVSHSG----PGATGTTLFPSHSATSVFVGE--PKTSPITSASMETTALP 124
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 29.6 bits (65), Expect = 2.1
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 162 HAEELQKHHSGYSGWPGTPGGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAP 216
H+EE HSG PG G P H SVF + P+T+ +A T P
Sbjct: 220 HSEESTVSHSG----PGATGTTLFPSHSATSVFVGE--PKTSPITSASMETTALP 268
>gi|51873034 F-box and leucine-rich repeat protein 9 [Homo sapiens]
Length = 223
Score = 29.3 bits (64), Expect = 2.7
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 14 PEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLSEGFVRVGVGIPDL 73
PEP L+ +D + L + +L + FL L +L+L L G+
Sbjct: 64 PEPQGPSLLTLRALQELDLTACSKLTDASLAKVLQFLQLRQLSLSLLPELTDNGLVAVAR 123
Query: 74 HAPSILHLAAQH-GELLPQGEAQQAAN 99
PS+ HLA H L +G AQ A++
Sbjct: 124 GCPSLEHLALSHCSRLSDKGWAQAASS 150
>gi|16306591 F-box and leucine-rich repeat protein 9 [Homo sapiens]
Length = 223
Score = 29.3 bits (64), Expect = 2.7
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 14 PEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLSEGFVRVGVGIPDL 73
PEP L+ +D + L + +L + FL L +L+L L G+
Sbjct: 64 PEPQGPSLLTLRALQELDLTACSKLTDASLAKVLQFLQLRQLSLSLLPELTDNGLVAVAR 123
Query: 74 HAPSILHLAAQH-GELLPQGEAQQAAN 99
PS+ HLA H L +G AQ A++
Sbjct: 124 GCPSLEHLALSHCSRLSDKGWAQAASS 150
>gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo
sapiens]
Length = 675
Score = 28.5 bits (62), Expect = 4.7
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 156 QVAEETHAEELQKHHSGYSGWPGTPGGD----------FLPRHKEGSVFASQRLPETAAP 205
+VAEE A E +H G G P G F P + E A + PE +
Sbjct: 19 KVAEEA-ALEASRHLGGEQSQAGAPEGSKMLRATAPCWFRPGYPEAKKVAKEAAPEASRH 77
Query: 206 AAAQDAPTLAP 216
A+ +P AP
Sbjct: 78 LGAEQSPAGAP 88
>gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo
sapiens]
Length = 675
Score = 28.5 bits (62), Expect = 4.7
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 156 QVAEETHAEELQKHHSGYSGWPGTPGGD----------FLPRHKEGSVFASQRLPETAAP 205
+VAEE A E +H G G P G F P + E A + PE +
Sbjct: 19 KVAEEA-ALEASRHLGGEQSQAGAPEGSKMLRATAPCWFRPGYPEAKKVAKEAAPEASRH 77
Query: 206 AAAQDAPTLAP 216
A+ +P AP
Sbjct: 78 LGAEQSPAGAP 88
>gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo
sapiens]
Length = 675
Score = 28.5 bits (62), Expect = 4.7
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 156 QVAEETHAEELQKHHSGYSGWPGTPGGD----------FLPRHKEGSVFASQRLPETAAP 205
+VAEE A E +H G G P G F P + E A + PE +
Sbjct: 19 KVAEEA-ALEASRHLGGEQSQAGAPEGSKMLRATAPCWFRPGYPEAKKVAKEAAPEASRH 77
Query: 206 AAAQDAPTLAP 216
A+ +P AP
Sbjct: 78 LGAEQSPAGAP 88
>gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo
sapiens]
Length = 675
Score = 28.5 bits (62), Expect = 4.7
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 156 QVAEETHAEELQKHHSGYSGWPGTPGGD----------FLPRHKEGSVFASQRLPETAAP 205
+VAEE A E +H G G P G F P + E A + PE +
Sbjct: 19 KVAEEA-ALEASRHLGGEQSQAGAPEGSKMLRATAPCWFRPGYPEAKKVAKEAAPEASRH 77
Query: 206 AAAQDAPTLAP 216
A+ +P AP
Sbjct: 78 LGAEQSPAGAP 88
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 28.5 bits (62), Expect = 4.7
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 174 SGWPGTPGGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAP 216
SG +PG P H+E S + Q P TA PA P+ P
Sbjct: 742 SGSISSPGSTGSPLHEEPSPPSPQNGPGTAVPAPTDFRPSATP 784
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 28.5 bits (62), Expect = 4.7
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 174 SGWPGTPGGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAP 216
SG +PG P H+E S + Q P TA PA P+ P
Sbjct: 742 SGSISSPGSTGSPLHEEPSPPSPQNGPGTAVPAPTDFRPSATP 784
>gi|31543535 R3H domain containing 1 [Homo sapiens]
Length = 1099
Score = 28.5 bits (62), Expect = 4.7
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 128 IVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTPGG 182
++P G + + S +G+L G+ +V + +++LQ H +G P PGG
Sbjct: 775 VIPPGQQNNLSSSVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQC-TAGPPPPPGG 828
>gi|4502745 cyclin-dependent kinase 8 [Homo sapiens]
Length = 464
Score = 28.5 bits (62), Expect = 4.7
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 16/130 (12%)
Query: 3 PNGEGQQLVFVPEPHRDVQCLLQQGPGVDQH------SQKVLVEPALLPAVLFLALLELA 56
PN Q VF+ R V L H + K +P LP + +LL
Sbjct: 76 PNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQI 135
Query: 57 LQLSEGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEE 116
L GI LHA +LH + +L GE + + +G A + P +
Sbjct: 136 LD----------GIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLK 185
Query: 117 QLALLGVIVL 126
LA L +V+
Sbjct: 186 PLADLDPVVV 195
>gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens]
Length = 502
Score = 28.5 bits (62), Expect = 4.7
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 16/130 (12%)
Query: 3 PNGEGQQLVFVPEPHRDVQCLLQQGPGVDQH------SQKVLVEPALLPAVLFLALLELA 56
PN Q VF+ R V L H + K +P LP + +LL
Sbjct: 76 PNVIALQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQI 135
Query: 57 LQLSEGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEE 116
L GI LHA +LH + +L GE + + +G A + P +
Sbjct: 136 LD----------GIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLK 185
Query: 117 QLALLGVIVL 126
LA L +V+
Sbjct: 186 PLADLDPVVV 195
>gi|6912540 nucleotide binding protein 2 (MinD homolog, E. coli)
[Homo sapiens]
Length = 271
Score = 28.5 bits (62), Expect = 4.7
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 54 ELALQLSEGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTH 113
ELAL L +VG+ DL PSI + G + Q + G APV
Sbjct: 34 ELALALRHAGKKVGILDVDLCGPSIPRMLGAQGRAVHQCDR-----------GWAPVFLD 82
Query: 114 PEEQLALLGVIVLLIVP 130
E+ ++L+ V LL P
Sbjct: 83 REQSISLMSVGFLLEKP 99
>gi|126273519 exonuclease GOR [Homo sapiens]
Length = 675
Score = 28.5 bits (62), Expect = 4.7
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 156 QVAEETHAEELQKHHSGYSGWPGTPGGD----------FLPRHKEGSVFASQRLPETAAP 205
+VAEE A E +H G G P G F P + E A + PE +
Sbjct: 19 KVAEEA-ALEASRHLGGEQSQAGAPEGSKMLRATAPCWFRPGYPEAKKVAKEAAPEASRH 77
Query: 206 AAAQDAPTLAP 216
A+ +P AP
Sbjct: 78 LGAEQSPAGAP 88
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 28.1 bits (61), Expect = 6.1
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 89 LPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL--LGVIVLLIVPIGHEVVVQSPIGHLWV 146
LP GE +Q+++L P A P H E++L L G++ + P+ P+G W
Sbjct: 27 LPLGEVEQSSHLVP----AVPGEVHVEQKLFLQFQGLVFCIGAPLFPSGARMKPVG-CWT 81
Query: 147 EGAIEVALTQVA 158
I+ L A
Sbjct: 82 LTGIDGGLVSAA 93
>gi|40316918 NOL1/NOP2/Sun domain family 4 protein [Homo sapiens]
Length = 384
Score = 28.1 bits (61), Expect = 6.1
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 114 PEEQLALLGVIVLLIVPIGHEVVVQSPIGHLW----VEGAIEVALTQVAEETHAEEL 166
P Q+ LL +L P GH V + HL V+GAIE+ Q + + E+L
Sbjct: 285 PVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDL 341
>gi|32129214 neuronal calcium-binding protein 2 [Homo sapiens]
Length = 386
Score = 28.1 bits (61), Expect = 6.1
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 146 VEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTPGGDFLPRHKEGSVFASQRLPETAAP 205
VE A+E A+ + + ++ HS W G+P P HK ++ + LP
Sbjct: 184 VESAVE-AIEEQTSQLRQNHIKPSHSAAQTWCGSPTPASAPNHKLMAMEQGKTLPSATED 242
Query: 206 A 206
A
Sbjct: 243 A 243
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,640,457
Number of Sequences: 37866
Number of extensions: 477724
Number of successful extensions: 1542
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1531
Number of HSP's gapped (non-prelim): 43
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.