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Search of human proteins with 239755530
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755530 PREDICTED: similar to hCG2036644 [Homo sapiens]
(336 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755530 PREDICTED: similar to hCG2036644 [Homo sapiens] 667 0.0
gi|239750002 PREDICTED: hypothetical protein XP_002347250 [Homo ... 645 0.0
gi|239744313 PREDICTED: hypothetical protein XP_002343115 [Homo ... 548 e-156
gi|71061468 centromere protein E [Homo sapiens] 35 0.12
gi|189217904 RPGRIP1-like isoform b [Homo sapiens] 32 0.61
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 32 0.61
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4... 32 0.80
gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ... 32 0.80
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2... 32 0.80
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ... 32 0.80
gi|229577185 epidermal growth factor receptor pathway substrate ... 32 1.0
gi|4503593 epidermal growth factor receptor pathway substrate 15... 32 1.0
gi|34878777 ring finger protein 20 [Homo sapiens] 31 1.8
gi|91754185 hypothetical protein LOC254268 [Homo sapiens] 30 2.3
gi|4506467 radixin [Homo sapiens] 30 3.0
gi|116008447 CAP-GLY domain containing linker protein 2 isoform ... 30 3.0
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 30 3.0
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 30 3.0
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 30 3.0
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens] 30 3.0
gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens] 30 3.0
gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens] 30 3.0
gi|110611228 utrophin [Homo sapiens] 30 3.0
gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor ... 30 3.0
gi|209862743 tetratricopeptide repeat domain 39C isoform 1 [Homo... 30 3.0
gi|116256462 tetratricopeptide repeat domain 39C isoform 2 [Homo... 30 3.0
gi|14702162 CAP-GLY domain containing linker protein 2 isoform 2... 30 3.0
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 30 4.0
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 30 4.0
gi|57768564 hypothetical protein LOC23281 isoform b [Homo sapiens] 30 4.0
>gi|239755530 PREDICTED: similar to hCG2036644 [Homo sapiens]
Length = 336
Score = 667 bits (1721), Expect = 0.0
Identities = 336/336 (100%), Positives = 336/336 (100%)
Query: 1 MVATSNAGIASLRLNPVPLLEKCLQNSITPLRGPLWVSKGEGFSPSGAKMYIQGVLLALY 60
MVATSNAGIASLRLNPVPLLEKCLQNSITPLRGPLWVSKGEGFSPSGAKMYIQGVLLALY
Sbjct: 1 MVATSNAGIASLRLNPVPLLEKCLQNSITPLRGPLWVSKGEGFSPSGAKMYIQGVLLALY 60
Query: 61 QRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNIG 120
QRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNIG
Sbjct: 61 QRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNIG 120
Query: 121 HLCKLGPQLQAEQEQFSSYVYQHIKSLPANTLVPGGLQLKVFENGKNTGEISVGISKKDL 180
HLCKLGPQLQAEQEQFSSYVYQHIKSLPANTLVPGGLQLKVFENGKNTGEISVGISKKDL
Sbjct: 121 HLCKLGPQLQAEQEQFSSYVYQHIKSLPANTLVPGGLQLKVFENGKNTGEISVGISKKDL 180
Query: 181 GSDSPIQTDHMMERLLLKIHQRLQGSSINPPGLNYSSMRLFDENGQEIKNPLSLKNEQKI 240
GSDSPIQTDHMMERLLLKIHQRLQGSSINPPGLNYSSMRLFDENGQEIKNPLSLKNEQKI
Sbjct: 181 GSDSPIQTDHMMERLLLKIHQRLQGSSINPPGLNYSSMRLFDENGQEIKNPLSLKNEQKI 240
Query: 241 WVSYGRAYRSPLNLALGLTFDRVSAFARGDIMVAYKTFLDPNAVLLPGCVGKFVRDFQLI 300
WVSYGRAYRSPLNLALGLTFDRVSAFARGDIMVAYKTFLDPNAVLLPGCVGKFVRDFQLI
Sbjct: 241 WVSYGRAYRSPLNLALGLTFDRVSAFARGDIMVAYKTFLDPNAVLLPGCVGKFVRDFQLI 300
Query: 301 STVPVNRYLTSLKRWTWRTIFYRTSLVLFDQEEESL 336
STVPVNRYLTSLKRWTWRTIFYRTSLVLFDQEEESL
Sbjct: 301 STVPVNRYLTSLKRWTWRTIFYRTSLVLFDQEEESL 336
>gi|239750002 PREDICTED: hypothetical protein XP_002347250 [Homo
sapiens]
Length = 505
Score = 645 bits (1665), Expect = 0.0
Identities = 324/324 (100%), Positives = 324/324 (100%)
Query: 1 MVATSNAGIASLRLNPVPLLEKCLQNSITPLRGPLWVSKGEGFSPSGAKMYIQGVLLALY 60
MVATSNAGIASLRLNPVPLLEKCLQNSITPLRGPLWVSKGEGFSPSGAKMYIQGVLLALY
Sbjct: 1 MVATSNAGIASLRLNPVPLLEKCLQNSITPLRGPLWVSKGEGFSPSGAKMYIQGVLLALY 60
Query: 61 QRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNIG 120
QRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNIG
Sbjct: 61 QRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNIG 120
Query: 121 HLCKLGPQLQAEQEQFSSYVYQHIKSLPANTLVPGGLQLKVFENGKNTGEISVGISKKDL 180
HLCKLGPQLQAEQEQFSSYVYQHIKSLPANTLVPGGLQLKVFENGKNTGEISVGISKKDL
Sbjct: 121 HLCKLGPQLQAEQEQFSSYVYQHIKSLPANTLVPGGLQLKVFENGKNTGEISVGISKKDL 180
Query: 181 GSDSPIQTDHMMERLLLKIHQRLQGSSINPPGLNYSSMRLFDENGQEIKNPLSLKNEQKI 240
GSDSPIQTDHMMERLLLKIHQRLQGSSINPPGLNYSSMRLFDENGQEIKNPLSLKNEQKI
Sbjct: 181 GSDSPIQTDHMMERLLLKIHQRLQGSSINPPGLNYSSMRLFDENGQEIKNPLSLKNEQKI 240
Query: 241 WVSYGRAYRSPLNLALGLTFDRVSAFARGDIMVAYKTFLDPNAVLLPGCVGKFVRDFQLI 300
WVSYGRAYRSPLNLALGLTFDRVSAFARGDIMVAYKTFLDPNAVLLPGCVGKFVRDFQLI
Sbjct: 241 WVSYGRAYRSPLNLALGLTFDRVSAFARGDIMVAYKTFLDPNAVLLPGCVGKFVRDFQLI 300
Query: 301 STVPVNRYLTSLKRWTWRTIFYRT 324
STVPVNRYLTSLKRWTWRTIFYRT
Sbjct: 301 STVPVNRYLTSLKRWTWRTIFYRT 324
>gi|239744313 PREDICTED: hypothetical protein XP_002343115 [Homo
sapiens]
Length = 456
Score = 548 bits (1413), Expect = e-156
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 50 MYIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLID 109
MYIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLID
Sbjct: 1 MYIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLID 60
Query: 110 ELQTAIKSNIGHLCKLGPQLQAEQEQFSSYVYQHIKSLPANTLVPGGLQLKVFENGKNTG 169
ELQTAIKSNIGHLCKLGPQLQAEQEQFSSYVYQHIKSLPANTLVPGGLQLKVFENGKNTG
Sbjct: 61 ELQTAIKSNIGHLCKLGPQLQAEQEQFSSYVYQHIKSLPANTLVPGGLQLKVFENGKNTG 120
Query: 170 EISVGISKKDLGSDSPIQTDHMMERLLLKIHQRLQGSSINPPGLNYSSMRLFDENGQEIK 229
EISVGISKKDLGSDSPIQTDHMMERLLLKIHQRLQGSSINPPGLNYSSMRLFDENGQEIK
Sbjct: 121 EISVGISKKDLGSDSPIQTDHMMERLLLKIHQRLQGSSINPPGLNYSSMRLFDENGQEIK 180
Query: 230 NPLSLKNEQKIWVSYGRAYRSPLNLALGLTFDRVSAFARGDIMVAYKTFLDPNAVLLPGC 289
NPLSLKNEQKIWVSYGRAYRSPLNLALGLTFDRVSAFARGDIMVAYKTFLDPNAVLLPGC
Sbjct: 181 NPLSLKNEQKIWVSYGRAYRSPLNLALGLTFDRVSAFARGDIMVAYKTFLDPNAVLLPGC 240
Query: 290 VGKFVRDFQLISTVPVNRYLTSLKRWTWRTIFYRT 324
VGKFVRDFQLISTVPVNRYLTSLKRWTWRTIFYRT
Sbjct: 241 VGKFVRDFQLISTVPVNRYLTSLKRWTWRTIFYRT 275
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 34.7 bits (78), Expect = 0.12
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 57 LALYQRLKSAKKYYKQLNLVMNEQKEKITEKVI-LSMTAKEHHKEQEEVSRLIDELQ 112
L + Q LK+A+ K+ +++ +EKI+EK I +S K+ K ++E+ + I ELQ
Sbjct: 1920 LEIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQ 1976
>gi|189217904 RPGRIP1-like isoform b [Homo sapiens]
Length = 1235
Score = 32.3 bits (72), Expect = 0.61
Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 76 VMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNIGHLCKLGPQLQAEQEQ 135
++ E +K+ + + ++ +++++ I +L+TA+KS++ ++ +L+ E++Q
Sbjct: 357 LLKENYDKLYDSAFSAAHEEQWKLKEQQLKVQIAQLETALKSDLTDKTEILDRLKTERDQ 416
Query: 136 FSSYVYQHIKSLPANTLVPGGLQLKVFENGKNTGEISVGISKKDLGSDSPIQTDHMMERL 195
V ++ + LQL+ E + E+ I K ++ I D + E L
Sbjct: 417 NEKLVQENRE-----------LQLQYLEQKQQLDELKKRI--KLYNQENDINADELSEAL 463
Query: 196 LLKIHQRLQ 204
LL Q+ Q
Sbjct: 464 LLIKAQKEQ 472
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 32.3 bits (72), Expect = 0.61
Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 76 VMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNIGHLCKLGPQLQAEQEQ 135
++ E +K+ + + ++ +++++ I +L+TA+KS++ ++ +L+ E++Q
Sbjct: 357 LLKENYDKLYDSAFSAAHEEQWKLKEQQLKVQIAQLETALKSDLTDKTEILDRLKTERDQ 416
Query: 136 FSSYVYQHIKSLPANTLVPGGLQLKVFENGKNTGEISVGISKKDLGSDSPIQTDHMMERL 195
V ++ + LQL+ E + E+ I K ++ I D + E L
Sbjct: 417 NEKLVQENRE-----------LQLQYLEQKQQLDELKKRI--KLYNQENDINADELSEAL 463
Query: 196 LLKIHQRLQ 204
LL Q+ Q
Sbjct: 464 LLIKAQKEQ 472
>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
[Homo sapiens]
Length = 488
Score = 32.0 bits (71), Expect = 0.80
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 31 LRGPLWVSKGEGFSPSGAKMYIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVIL 90
LRGP +S+G F + Q + A++Q + M I K
Sbjct: 140 LRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQ------------SQTMEGCSSPIVVKFAD 187
Query: 91 SMTAKEHHKEQEEVSRLIDELQTAIKSNIGHLCKLGPQLQAEQEQFSS 138
+ KE + Q+++++ + +L TA N+ L L PQ A +Q +S
Sbjct: 188 TQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATS 235
>gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1
[Homo sapiens]
Length = 490
Score = 32.0 bits (71), Expect = 0.80
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 31 LRGPLWVSKGEGFSPSGAKMYIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVIL 90
LRGP +S+G F + Q + A++Q + M I K
Sbjct: 140 LRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQ------------SQTMEGCSSPIVVKFAD 187
Query: 91 SMTAKEHHKEQEEVSRLIDELQTAIKSNIGHLCKLGPQLQAEQEQFSS 138
+ KE + Q+++++ + +L TA N+ L L PQ A +Q +S
Sbjct: 188 TQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATS 235
>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
[Homo sapiens]
Length = 521
Score = 32.0 bits (71), Expect = 0.80
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 31 LRGPLWVSKGEGFSPSGAKMYIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVIL 90
LRGP +S+G F + Q + A++Q + M I K
Sbjct: 171 LRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQ------------SQTMEGCSSPIVVKFAD 218
Query: 91 SMTAKEHHKEQEEVSRLIDELQTAIKSNIGHLCKLGPQLQAEQEQFSS 138
+ KE + Q+++++ + +L TA N+ L L PQ A +Q +S
Sbjct: 219 TQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATS 266
>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
[Homo sapiens]
Length = 508
Score = 32.0 bits (71), Expect = 0.80
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 31 LRGPLWVSKGEGFSPSGAKMYIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVIL 90
LRGP +S+G F + Q + A++Q + M I K
Sbjct: 164 LRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQ------------SQTMEGCSSPIVVKFAD 211
Query: 91 SMTAKEHHKEQEEVSRLIDELQTAIKSNIGHLCKLGPQLQAEQEQFSS 138
+ KE + Q+++++ + +L TA N+ L L PQ A +Q +S
Sbjct: 212 TQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATS 259
>gi|229577185 epidermal growth factor receptor pathway substrate 15
isoform B [Homo sapiens]
Length = 582
Score = 31.6 bits (70), Expect = 1.0
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 59 LYQRLKSA-KKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRL---IDELQTA 114
L ++LK KK ++ L+ + + E +++ +S +E K +EE+SRL EL+ +
Sbjct: 94 LEEQLKEVRKKCAEEAQLISSLKAELTSQESQISTYEEELAKAREELSRLQQETAELEES 153
Query: 115 IKSNIGHLCKLGPQLQAEQEQFSS 138
++S L L LQ Q++ SS
Sbjct: 154 VESGKAQLEPLQQHLQDSQQEISS 177
>gi|4503593 epidermal growth factor receptor pathway substrate 15
isoform A [Homo sapiens]
Length = 896
Score = 31.6 bits (70), Expect = 1.0
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 59 LYQRLKSA-KKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRL---IDELQTA 114
L ++LK KK ++ L+ + + E +++ +S +E K +EE+SRL EL+ +
Sbjct: 408 LEEQLKEVRKKCAEEAQLISSLKAELTSQESQISTYEEELAKAREELSRLQQETAELEES 467
Query: 115 IKSNIGHLCKLGPQLQAEQEQFSS 138
++S L L LQ Q++ SS
Sbjct: 468 VESGKAQLEPLQQHLQDSQQEISS 491
>gi|34878777 ring finger protein 20 [Homo sapiens]
Length = 975
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 62 RLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNIG 120
+L S + Q++ ++ E+KE++ ++V+ T K Q +V R ++E + ++SNIG
Sbjct: 762 KLMSERIKSNQIHKLLKEEKEELADQVL---TLKTQVDAQLQVVRKLEEKEHLLQSNIG 817
Score = 28.5 bits (62), Expect = 8.9
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 41 EGFSPSGAKMYIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKE 100
E + G K+Y G L +A+K+ +++N + E KE ++ ++ ++
Sbjct: 297 ERVNSKGYKVYGAGSSLYGGTITINARKF-EEMNAELEENKELAQNRLC---ELEKLRQD 352
Query: 101 QEEVSRLIDELQTAIKSNIGHLCKLGPQLQAEQEQFS 137
EEV+ ++L+ ++S + + K P+ + Q QFS
Sbjct: 353 FEEVTTQNEKLKVELRSAVEQVVKETPEYRCMQSQFS 389
>gi|91754185 hypothetical protein LOC254268 [Homo sapiens]
Length = 836
Score = 30.4 bits (67), Expect = 2.3
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 79 EQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNIGHLCKLGPQLQAEQEQFSS 138
EQK KITE + E + + EL T I+S L KL P Q SS
Sbjct: 318 EQKGKITEP--------SQQIQMEPIVHIHQELLTGIESEAS-LSKLSPTSQKGTSSSSS 368
Query: 139 YVYQHI 144
Y++Q I
Sbjct: 369 YIFQKI 374
>gi|4506467 radixin [Homo sapiens]
Length = 583
Score = 30.0 bits (66), Expect = 3.0
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 59 LYQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSN 118
L +RLK ++ + + EQ K E AKE + E+ R +E ++AI
Sbjct: 347 LMERLKQIEEQTIKAQKELEEQTRKALELDQERKRAKEEAERLEKERRAAEEAKSAIAKQ 406
Query: 119 IGHLCKLGPQLQAEQEQFSSYV 140
K QL AE +F++ +
Sbjct: 407 AADQMKNQEQLAAELAEFTAKI 428
>gi|116008447 CAP-GLY domain containing linker protein 2 isoform 1
[Homo sapiens]
Length = 1046
Score = 30.0 bits (66), Expect = 3.0
Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 56 LLALYQRLKSAKKYYKQLNLVMNEQKEKITE--KVILSMTAKEHHKEQEEVSRLIDELQT 113
+L L +RL SA K +++ + V+ ++ EK + + + + K +EV+ L D++Q
Sbjct: 542 ILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQ 601
Query: 114 AIKSNIGHLCKLGPQLQAEQEQFSSYVYQHIKSLPANTLVPGGLQLK-------VFENGK 166
A N+G L +++ + +S + ++ L A G Q K V E K
Sbjct: 602 ATSENMG----LMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIK 657
Query: 167 NTGEISVG--ISKKDLGSDSPIQTDHMMERLLLKIHQRLQG 205
++ +G +K DL + ++ + L + + L G
Sbjct: 658 MEHQLELGNLQAKHDLETAMHVKEKEALREKLQEAQEELAG 698
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 60 YQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNI 119
Y++L+S+ + +++++ ++ KE + EK + + E +V R + +QT +KS
Sbjct: 792 YEKLQSSLE--SEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREKENIQTLLKSKE 849
Query: 120 GHLCKLGPQLQAEQEQFS 137
+ +L + Q QE+ +
Sbjct: 850 QEVNELLQKFQQAQEELA 867
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 60 YQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNI 119
Y++L+S+ + +++++ ++ KE + EK + + E +V R + +QT +KS
Sbjct: 781 YEKLQSSLE--SEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREKENIQTLLKSKE 838
Query: 120 GHLCKLGPQLQAEQEQFS 137
+ +L + Q QE+ +
Sbjct: 839 QEVNELLQKFQQAQEELA 856
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 60 YQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNI 119
Y++L+S+ + +++++ ++ KE + EK + + E +V R + +QT +KS
Sbjct: 760 YEKLQSSLE--SEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREKENIQTLLKSKE 817
Query: 120 GHLCKLGPQLQAEQEQFS 137
+ +L + Q QE+ +
Sbjct: 818 QEVNELLQKFQQAQEELA 835
>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 60 YQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNI 119
Y++L+S+ + +++++ ++ KE + EK + + E +V R + +QT +KS
Sbjct: 789 YEKLQSSLE--SEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREKENIQTLLKSKE 846
Query: 120 GHLCKLGPQLQAEQEQFS 137
+ +L + Q QE+ +
Sbjct: 847 QEVNELLQKFQQAQEELA 864
>gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 60 YQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNI 119
Y++L+S+ + +++++ ++ KE + EK + + E +V R + +QT +KS
Sbjct: 789 YEKLQSSLE--SEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREKENIQTLLKSKE 846
Query: 120 GHLCKLGPQLQAEQEQFS 137
+ +L + Q QE+ +
Sbjct: 847 QEVNELLQKFQQAQEELA 864
>gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 60 YQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNI 119
Y++L+S+ + +++++ ++ KE + EK + + E +V R + +QT +KS
Sbjct: 789 YEKLQSSLE--SEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREKENIQTLLKSKE 846
Query: 120 GHLCKLGPQLQAEQEQFS 137
+ +L + Q QE+ +
Sbjct: 847 QEVNELLQKFQQAQEELA 864
>gi|110611228 utrophin [Homo sapiens]
Length = 3433
Score = 30.0 bits (66), Expect = 3.0
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 49 KMYIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKI--------TEKVILSMTAKEHHKE 100
K IQ + Y +++ + K+L + EQ+E+I T ++++ KE
Sbjct: 707 KTAIQTTEIKEYMKMQDTSEMKKKLKALEKEQRERIPRADELNQTGQILVEQMGKE-GLP 765
Query: 101 QEEVSRLIDELQTAIKSNIGHLCKLGPQLQAEQEQFSSYVYQ 142
EE+ +++++ + K+ HL L ++Q QE ++Y Q
Sbjct: 766 TEEIKNVLEKVSSEWKNVSQHLEDLERKIQL-QEDINAYFKQ 806
>gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor
[Homo sapiens]
Length = 1419
Score = 30.0 bits (66), Expect = 3.0
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 36 WVSKGEGFSPSGAKMYIQGVLLALYQRLKSAKKYYKQLNLVMNE----QKEKI------T 85
W K + +P + Y Q LLA+Y R K YY +L + KE + T
Sbjct: 754 WYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEET 813
Query: 86 EKVILSMTAKEHHKEQEEVSRLIDELQTAIKSNIGHL 122
++ M K+H EE D+ + KS H+
Sbjct: 814 KRKAEQMEKKQH----EEFDLSPDQWRKGKKSTFRHV 846
>gi|209862743 tetratricopeptide repeat domain 39C isoform 1 [Homo
sapiens]
Length = 583
Score = 30.0 bits (66), Expect = 3.0
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 51 YIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVS-RLID 109
YI+G + L + K K Y +N + ++K+TE+ + S A ++H E VS ++
Sbjct: 155 YIKGGWI-LRKAWKIYNKCYLDINALQELYQKKLTEESLTSDAANDNHIVAEGVSEESLN 213
Query: 110 ELQTAIKSNIG--HLC 123
L+ A+ G HLC
Sbjct: 214 RLKGAVSFGYGLFHLC 229
>gi|116256462 tetratricopeptide repeat domain 39C isoform 2 [Homo
sapiens]
Length = 522
Score = 30.0 bits (66), Expect = 3.0
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 51 YIQGVLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVS-RLID 109
YI+G + L + K K Y +N + ++K+TE+ + S A ++H E VS ++
Sbjct: 94 YIKGGWI-LRKAWKIYNKCYLDINALQELYQKKLTEESLTSDAANDNHIVAEGVSEESLN 152
Query: 110 ELQTAIKSNIG--HLC 123
L+ A+ G HLC
Sbjct: 153 RLKGAVSFGYGLFHLC 168
>gi|14702162 CAP-GLY domain containing linker protein 2 isoform 2
[Homo sapiens]
Length = 1011
Score = 30.0 bits (66), Expect = 3.0
Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 56 LLALYQRLKSAKKYYKQLNLVMNEQKEKITE--KVILSMTAKEHHKEQEEVSRLIDELQT 113
+L L +RL SA K +++ + V+ ++ EK + + + + K +EV+ L D++Q
Sbjct: 507 ILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQ 566
Query: 114 AIKSNIGHLCKLGPQLQAEQEQFSSYVYQHIKSLPANTLVPGGLQLK-------VFENGK 166
A N+G L +++ + +S + ++ L A G Q K V E K
Sbjct: 567 ATSENMG----LMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIK 622
Query: 167 NTGEISVG--ISKKDLGSDSPIQTDHMMERLLLKIHQRLQG 205
++ +G +K DL + ++ + L + + L G
Sbjct: 623 MEHQLELGNLQAKHDLETAMHVKEKEALREKLQEAQEELAG 663
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 29.6 bits (65), Expect = 4.0
Identities = 44/206 (21%), Positives = 86/206 (41%), Gaps = 27/206 (13%)
Query: 56 LLALYQRLKSAKKYYKQLNLVMNEQKEKITE---------KVILSMTAKEHHKEQEEVSR 106
L A R+ S + +LN +NE KEK+++ +++LS A + ++ ++
Sbjct: 609 LRAAQDRVLSLETSVNELNSQLNESKEKVSQLDIQIKAKTELLLSAEAAK-TAQRADLQN 667
Query: 107 LIDELQTAIKSNIGHLCKLGPQLQ------AEQEQFSSYVYQHIK-------SLPANTLV 153
+D Q A++ L K+ QL ++++ S + H+K SL T
Sbjct: 668 HLDTAQNALQDKQQELNKITTQLDQVTAKLQDKQEHCSQLESHLKEYKEKYLSLEQKTEE 727
Query: 154 PGGLQLKVFENGKNTGEISVGISKKDLGSDSPIQTDHMMERLLLKIHQRLQGSSINPPGL 213
G Q+K E + S + +DL + TD + L ++ ++ L
Sbjct: 728 LEG-QIKKLEADSLEVKASKEQALQDLQQQRQLNTDLELRATELSKQLEMEKEIVSSTRL 786
Query: 214 NYSSMRLFDENGQEIKNPLSLKNEQK 239
+ ++ E + IK L+ + E+K
Sbjct: 787 D---LQKKSEALESIKQKLTKQEEEK 809
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 29.6 bits (65), Expect = 4.0
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 19/138 (13%)
Query: 61 QRLKSAKKYYKQLNLVMNE-QKEKITEKVILSMTAKEHHKEQEEVSR---LIDELQTAIK 116
+++ + ++ K L V E QK+ K L+ + K Q E++ L+D+ Q+
Sbjct: 2033 EKISALERTVKALEFVQTESQKDLEITKENLAQAVEHRKKAQAELASFKVLLDDTQSEAA 2092
Query: 117 SNIGHLCKLGPQLQAEQEQFSSYVYQHIKSLPANTLVPGGLQLKVFEN------------ 164
+ KL +LQ+ +E S + Q + L LK +N
Sbjct: 2093 RVLADNLKLKKELQSNKESVKSQMKQKDEDLERRLEQAEEKHLKEKKNMQEKLDALRREK 2152
Query: 165 ---GKNTGEISVGISKKD 179
+ GEI V ++KKD
Sbjct: 2153 VHLEETIGEIQVTLNKKD 2170
>gi|57768564 hypothetical protein LOC23281 isoform b [Homo sapiens]
Length = 348
Score = 29.6 bits (65), Expect = 4.0
Identities = 21/86 (24%), Positives = 38/86 (44%)
Query: 55 VLLALYQRLKSAKKYYKQLNLVMNEQKEKITEKVILSMTAKEHHKEQEEVSRLIDELQTA 114
+ LA YQ L+ K KQ+ + N+Q + +K++ E + EE +++ +
Sbjct: 206 IALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNED 265
Query: 115 IKSNIGHLCKLGPQLQAEQEQFSSYV 140
+K+ I + QL E YV
Sbjct: 266 LKARIDQNTVVTRQLSEENANLQEYV 291
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,673,046
Number of Sequences: 37866
Number of extensions: 556994
Number of successful extensions: 1977
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1944
Number of HSP's gapped (non-prelim): 80
length of query: 336
length of database: 18,247,518
effective HSP length: 103
effective length of query: 233
effective length of database: 14,347,320
effective search space: 3342925560
effective search space used: 3342925560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.