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Search of human proteins with 239755452
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755452 PREDICTED: hypothetical protein [Homo sapiens]
(171 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755452 PREDICTED: hypothetical protein [Homo sapiens] 369 e-103
gi|239749933 PREDICTED: hypothetical protein XP_002347217 [Homo ... 365 e-102
gi|239744256 PREDICTED: hypothetical protein XP_002343085 [Homo ... 365 e-102
gi|22027509 cell division cycle associated 4 [Homo sapiens] 31 0.46
gi|22027511 cell division cycle associated 4 [Homo sapiens] 31 0.46
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens] 30 0.78
gi|157739940 nudix (nucleoside diphosphate linked moiety X)-type... 30 1.0
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 30 1.3
gi|117956403 rabaptin, RAB GTPase binding effector protein 2 [Ho... 29 1.7
gi|30425464 transmembrane protein 105 [Homo sapiens] 29 1.7
gi|24797153 faciogenital dysplasia protein [Homo sapiens] 29 2.3
gi|5902106 SRY-box 15 [Homo sapiens] 29 2.3
gi|124378039 SEC16 homolog A [Homo sapiens] 28 3.0
gi|239756833 PREDICTED: hypothetical protein [Homo sapiens] 28 3.0
gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo ... 28 3.0
gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo ... 28 3.0
gi|46409442 hypothetical protein LOC389197 [Homo sapiens] 28 3.0
gi|14249552 disrupted in renal carcinoma 2 [Homo sapiens] 28 3.0
gi|19743898 receptor tyrosine kinase-like orphan receptor 2 prec... 28 3.9
gi|239744563 PREDICTED: hypothetical protein XP_002343195 [Homo ... 28 3.9
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 28 5.0
gi|117606370 UMP-CMP kinase 2 [Homo sapiens] 28 5.0
gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo sapi... 27 6.6
gi|169173182 PREDICTED: hypothetical protein [Homo sapiens] 27 6.6
>gi|239755452 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 369 bits (946), Expect = e-103
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MCRLLCGWCWVYSAHLVPEDVAPVAFLTAPIGEAPRTEAMADVSWGLGLGQGTEQVVEGA 60
MCRLLCGWCWVYSAHLVPEDVAPVAFLTAPIGEAPRTEAMADVSWGLGLGQGTEQVVEGA
Sbjct: 1 MCRLLCGWCWVYSAHLVPEDVAPVAFLTAPIGEAPRTEAMADVSWGLGLGQGTEQVVEGA 60
Query: 61 TQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAAHRCQEVP 120
TQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAAHRCQEVP
Sbjct: 61 TQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAAHRCQEVP 120
Query: 121 RPSLLTFPKGQVWGCWCPQHVYLLLWPPGLLRGEGVAIQPPPYRAPWKSGP 171
RPSLLTFPKGQVWGCWCPQHVYLLLWPPGLLRGEGVAIQPPPYRAPWKSGP
Sbjct: 121 RPSLLTFPKGQVWGCWCPQHVYLLLWPPGLLRGEGVAIQPPPYRAPWKSGP 171
>gi|239749933 PREDICTED: hypothetical protein XP_002347217 [Homo
sapiens]
Length = 171
Score = 365 bits (938), Expect = e-102
Identities = 170/171 (99%), Positives = 170/171 (99%)
Query: 1 MCRLLCGWCWVYSAHLVPEDVAPVAFLTAPIGEAPRTEAMADVSWGLGLGQGTEQVVEGA 60
MCRLLCGWCWVYSAHLVPEDVAPVAFLTAPIGEAPRTEAMADVSWGLGLGQGTEQVVEGA
Sbjct: 1 MCRLLCGWCWVYSAHLVPEDVAPVAFLTAPIGEAPRTEAMADVSWGLGLGQGTEQVVEGA 60
Query: 61 TQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAAHRCQEVP 120
TQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAAH CQEVP
Sbjct: 61 TQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAAHCCQEVP 120
Query: 121 RPSLLTFPKGQVWGCWCPQHVYLLLWPPGLLRGEGVAIQPPPYRAPWKSGP 171
RPSLLTFPKGQVWGCWCPQHVYLLLWPPGLLRGEGVAIQPPPYRAPWKSGP
Sbjct: 121 RPSLLTFPKGQVWGCWCPQHVYLLLWPPGLLRGEGVAIQPPPYRAPWKSGP 171
>gi|239744256 PREDICTED: hypothetical protein XP_002343085 [Homo
sapiens]
Length = 171
Score = 365 bits (938), Expect = e-102
Identities = 170/171 (99%), Positives = 170/171 (99%)
Query: 1 MCRLLCGWCWVYSAHLVPEDVAPVAFLTAPIGEAPRTEAMADVSWGLGLGQGTEQVVEGA 60
MCRLLCGWCWVYSAHLVPEDVAPVAFLTAPIGEAPRTEAMADVSWGLGLGQGTEQVVEGA
Sbjct: 1 MCRLLCGWCWVYSAHLVPEDVAPVAFLTAPIGEAPRTEAMADVSWGLGLGQGTEQVVEGA 60
Query: 61 TQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAAHRCQEVP 120
TQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAAH CQEVP
Sbjct: 61 TQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAAHCCQEVP 120
Query: 121 RPSLLTFPKGQVWGCWCPQHVYLLLWPPGLLRGEGVAIQPPPYRAPWKSGP 171
RPSLLTFPKGQVWGCWCPQHVYLLLWPPGLLRGEGVAIQPPPYRAPWKSGP
Sbjct: 121 RPSLLTFPKGQVWGCWCPQHVYLLLWPPGLLRGEGVAIQPPPYRAPWKSGP 171
>gi|22027509 cell division cycle associated 4 [Homo sapiens]
Length = 241
Score = 31.2 bits (69), Expect = 0.46
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 21 VAPVAFLTAPIGEAPRTEAMADVSWGL-------GLGQGTEQVVEGATQGLAQLQGPHHV 73
VAP A AP+ TE + +WG GLG G Q + Q P H+
Sbjct: 82 VAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDGHTQGPVSDLCPVTSAQAPRHL 141
Query: 74 QATFYPELGP 83
Q++ + GP
Sbjct: 142 QSSAWEMDGP 151
>gi|22027511 cell division cycle associated 4 [Homo sapiens]
Length = 241
Score = 31.2 bits (69), Expect = 0.46
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 21 VAPVAFLTAPIGEAPRTEAMADVSWGL-------GLGQGTEQVVEGATQGLAQLQGPHHV 73
VAP A AP+ TE + +WG GLG G Q + Q P H+
Sbjct: 82 VAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDGHTQGPVSDLCPVTSAQAPRHL 141
Query: 74 QATFYPELGP 83
Q++ + GP
Sbjct: 142 QSSAWEMDGP 151
>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
Length = 4861
Score = 30.4 bits (67), Expect = 0.78
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 34 APRTEAMADVSWGLG---LGQGTEQVVE----GATQGLAQLQGPHHVQATFYPELGPGLC 86
+P + + VSW + L E++V +GL +Q PH V A +PE GP
Sbjct: 3483 SPSDPSFSPVSWSISGKYLAGALEKMVNIWQVNGGKGLVDIQ-PHWVSALAWPEEGPATA 3541
Query: 87 VSRIQSSPGLQLQGLSEAGLSL 108
S SP L L G + L L
Sbjct: 3542 WS--GESPELLLVGRMDGSLGL 3561
>gi|157739940 nudix (nucleoside diphosphate linked moiety X)-type
motif 19 [Homo sapiens]
Length = 375
Score = 30.0 bits (66), Expect = 1.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 147 PPGLLRGEGVAIQPPPYRAPWK 168
PPG G G+A++PPP A W+
Sbjct: 147 PPGPAPGPGLALEPPPGLASWR 168
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 29.6 bits (65), Expect = 1.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 23 PVAFLTAPIGEAPRTEAMADVSWGLGLGQGTEQVVEGATQGLAQLQGP 70
P A L AP G AP T A A + G G TE A++ A +GP
Sbjct: 2264 PAASLCAPDGPAPNTVAQAQAADGAGPEDDTE-----ASRAAAPAEGP 2306
>gi|117956403 rabaptin, RAB GTPase binding effector protein 2 [Homo
sapiens]
Length = 569
Score = 29.3 bits (64), Expect = 1.7
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 50 GQGTEQVVEGATQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLS 109
G EQ+ A QG Q QG + PEL LC +R ++ LQ Q L +
Sbjct: 386 GLRAEQLPSSAPQGSQQEQGEEESLPSSVPELQQLLCCTRQEARARLQAQEHGAERLRIE 445
Query: 110 LAAAHRCQE---VPRPSL 124
+ E V R SL
Sbjct: 446 IVTLREALEEETVARASL 463
>gi|30425464 transmembrane protein 105 [Homo sapiens]
Length = 129
Score = 29.3 bits (64), Expect = 1.7
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
Query: 127 FPKGQVWGCWCPQHVYLLLW--------PPGLLRGEGVAIQPPPYRAPW 167
F G V G Q +YLL W PP LL+G + Q P R+PW
Sbjct: 21 FRAGNVIG----QLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPW 65
>gi|24797153 faciogenital dysplasia protein [Homo sapiens]
Length = 961
Score = 28.9 bits (63), Expect = 2.3
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 19/107 (17%)
Query: 30 PIGEAPRTEAMADVSWGL-------GLGQGTEQVVEGATQGLAQLQGPHHVQATFYPELG 82
P G +P+ S+ L GL QG +V+ + Q PH PE G
Sbjct: 78 PCGPSPQHHRALRFSYHLEGSQPRPGLHQGNRILVKSLSLDPGQSLEPH-------PE-G 129
Query: 83 PGLCVSRIQSSPGLQLQGLSEAGLSLSLAAAHRCQEVPRPSLLTFPK 129
P R++S PG + S+ L A + Q P+PS L P+
Sbjct: 130 P----QRLRSDPGPPTETPSQRPSPLKRAPGPKPQVPPKPSYLQMPR 172
>gi|5902106 SRY-box 15 [Homo sapiens]
Length = 233
Score = 28.9 bits (63), Expect = 2.3
Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Query: 79 PELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAAHRCQEVPRPSLLTFPKGQVWGCWCP 138
P GPG ++ G + S A L S ++H E P P L ++ G P
Sbjct: 146 PLWGPGYATTQPSRGFGYRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLP 205
Query: 139 QHVYLLLWPPGLLRGEGVAIQPPPYRAPWKSGP 171
+ + L PPG P PY P P
Sbjct: 206 TYTHYL--PPG---------SPTPYNPPLAGAP 227
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 28.5 bits (62), Expect = 3.0
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 33 EAPRTEAMADVSWGLGLGQGTEQVVEGATQGLAQLQGPHHVQATFYPELGPGLCVSRIQS 92
E P E++A +W + L Q Q+ EGA G H Q P+ PG S ++
Sbjct: 1864 EKPEEESLAAPTWLVHLQQVERQIKEGA--------GVWH-QDGALPQQCPGTPSSEMEQ 1914
Query: 93 SPGLQLQGLSEAGLSLSLAAAHRCQEVPRPS 123
L GLS+ G +L A+ VP PS
Sbjct: 1915 ---LDRPGLSQPG---ALGIANPLLAVPAPS 1939
>gi|239756833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 28.5 bits (62), Expect = 3.0
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 46 GLGLGQGTEQVVEGATQGLAQLQGPHHVQATFY--PELGPGLCVSRIQSSP 94
G+GLG+G G +GLA Q P Q L P L + +QS P
Sbjct: 133 GIGLGRGRGAAAVGVAEGLAVAQEPVQPQRRLQVARALAPALSLVLLQSVP 183
>gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo
sapiens]
Length = 346
Score = 28.5 bits (62), Expect = 3.0
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 46 GLGLGQGTEQVVEGATQGLAQLQGPHHVQATFY--PELGPGLCVSRIQSSP 94
G+GLG+G G +GLA Q P Q L P L + +QS P
Sbjct: 198 GIGLGRGRGAAAVGVAEGLAVAQEPVQPQRRLQVARALAPALSLVLLQSVP 248
>gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo
sapiens]
Length = 346
Score = 28.5 bits (62), Expect = 3.0
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 46 GLGLGQGTEQVVEGATQGLAQLQGPHHVQATFY--PELGPGLCVSRIQSSP 94
G+GLG+G G +GLA Q P Q L P L + +QS P
Sbjct: 198 GIGLGRGRGAAAVGVAEGLAVAQEPVQPQRRLQVARALAPALSLVLLQSVP 248
>gi|46409442 hypothetical protein LOC389197 [Homo sapiens]
Length = 276
Score = 28.5 bits (62), Expect = 3.0
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 81 LGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAAHRCQEVPRPSLLTFP 128
L PG C++ + PGL Q L E G A + VP PS L P
Sbjct: 202 LDPGTCLAAVTVEPGLPAQRLQEKG--GMPCPALQVDNVPAPSELLSP 247
>gi|14249552 disrupted in renal carcinoma 2 [Homo sapiens]
Length = 478
Score = 28.5 bits (62), Expect = 3.0
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 26/74 (35%)
Query: 79 PELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAAHRCQEVPRP--------------SL 124
P LGPGL PGL S + +L AA VP P SL
Sbjct: 13 PLLGPGL-------GPGLGASWRSREAAAAALPAA-----VPGPGRVYGRRWLVLLLFSL 60
Query: 125 LTFPKGQVWGCWCP 138
L F +G VW W P
Sbjct: 61 LAFVQGLVWNTWGP 74
>gi|19743898 receptor tyrosine kinase-like orphan receptor 2
precursor [Homo sapiens]
Length = 943
Score = 28.1 bits (61), Expect = 3.9
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 67 LQGPH--HVQATFYPELGPGLCVSRIQSSPGLQLQG 100
LQ PH H+ +T +PELG G R +PG Q++G
Sbjct: 342 LQHPHSHHLSSTDFPELGGGHAYCR---NPGGQMEG 374
>gi|239744563 PREDICTED: hypothetical protein XP_002343195 [Homo
sapiens]
Length = 302
Score = 28.1 bits (61), Expect = 3.9
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 4 LLCGWCWVYSAHLVPEDVAPVAFLT-APIGE----APRTEAMADVSWGLGLGQGTEQVVE 58
+LC C Y H + E+ APV L P+GE A + E D++ GL +G +E
Sbjct: 2 VLCPHCQPYLRH-ITEETAPVEVLVGGPLGEVVPGAFQEEVGEDLADGLPVGVVLVAFLE 60
Query: 59 GATQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAA 113
GL V F E G GL V + + ++ L AGL + + A
Sbjct: 61 EDGDGLP----VGVVLVAFLEEEGDGLPVGVVLVAFPEEVVDLVAAGLLVGVVPA 111
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 27.7 bits (60), Expect = 5.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 117 QEVPRPSLLTFPKGQVWGCWCPQHVYLLLWPPGLLRGEGVAIQPPPYR 164
QE RPS L P Q+ P L PG + +G ++PPP R
Sbjct: 4315 QEPKRPSQLPSPSSQL-----PTEAQLPPTHPGTPKPQGPTLEPPPGR 4357
>gi|117606370 UMP-CMP kinase 2 [Homo sapiens]
Length = 449
Score = 27.7 bits (60), Expect = 5.0
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 116 CQEVPRPSLLTF---PKGQVW 133
CQE PRP L F P+GQ+W
Sbjct: 153 CQEAPRPHLGEFEADPRGQLW 173
>gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 422
Score = 27.3 bits (59), Expect = 6.6
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 84 GLCVSRIQS--------SPGLQLQGLSEAGLSLSLAAAHRCQEVPRPSLLTFPKGQVWGC 135
GL SRIQ PG + ++AG SL A C P PS + F VWG
Sbjct: 132 GLPASRIQMWFPNRRARHPGQAARAPAQAG-SLCNAVPGACH--PAPSWVAFAHTGVWGT 188
Query: 136 WCPQH 140
P H
Sbjct: 189 GLPPH 193
>gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 27.3 bits (59), Expect = 6.6
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 93 SPGLQLQGLSEAGLSLSLAAAHRCQEVPRPSLLTFPKGQVWGCWCPQHVYLLLWP-PGLL 151
SPG L A +LS C+ +P P+ + P+ L L P PG L
Sbjct: 11 SPGRPCPPLFSAWEALSKVEGSECRALPTPTAPGPSPRRA-----PEPPLLTLRPRPGTL 65
Query: 152 RGEGVAIQPPPYRA------PW 167
R G A P P RA PW
Sbjct: 66 RAPGNAESPAPRRARPDLGRPW 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,591,305
Number of Sequences: 37866
Number of extensions: 443585
Number of successful extensions: 1011
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1001
Number of HSP's gapped (non-prelim): 29
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.