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Search of human proteins with 239755340
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755340 PREDICTED: similar to hCG2040250 [Homo sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755340 PREDICTED: similar to hCG2040250 [Homo sapiens] 375 e-104
gi|31377775 glutamate dehydrogenase 2 [Homo sapiens] 43 1e-04
gi|4885281 glutamate dehydrogenase 1 [Homo sapiens] 43 1e-04
gi|169213008 PREDICTED: hypothetical protein [Homo sapiens] 35 0.045
gi|169213173 PREDICTED: hypothetical protein [Homo sapiens] 35 0.045
gi|169212850 PREDICTED: hypothetical protein [Homo sapiens] 35 0.045
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 31 0.66
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|21735544 mitogen-activated protein kinase kinase 7 [Homo sapi... 30 1.1
gi|189083742 neutrophil cytosolic factor 2 [Homo sapiens] 29 1.9
gi|67189970 neutrophil cytosolic factor 2 [Homo sapiens] 29 1.9
gi|55741677 SET domain containing 1A [Homo sapiens] 29 1.9
gi|239757439 PREDICTED: hypothetical protein [Homo sapiens] 29 2.5
gi|239751956 PREDICTED: hypothetical protein [Homo sapiens] 29 2.5
gi|239746439 PREDICTED: hypothetical protein XP_002344222 [Homo ... 29 2.5
gi|38569484 kinesin family member 21A [Homo sapiens] 29 2.5
gi|169163335 PREDICTED: similar to hCG1742442 [Homo sapiens] 28 3.3
gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens] 28 4.3
gi|39930571 leucine rich repeat containing 56 [Homo sapiens] 28 5.6
gi|150418005 protein tyrosine phosphatase, non-receptor type 21 ... 28 5.6
gi|42519916 forkhead box O3A [Homo sapiens] 28 5.6
gi|4503739 forkhead box O3A [Homo sapiens] 28 5.6
gi|40353727 synaptopodin isoform A [Homo sapiens] 28 5.6
gi|56118234 proline rich 6 [Homo sapiens] 28 5.6
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 28 5.6
gi|38373677 guanine nucleotide-releasing factor 2 isoform b [Hom... 27 7.3
gi|38373675 guanine nucleotide-releasing factor 2 isoform a [Hom... 27 7.3
gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens] 27 7.3
gi|239753856 PREDICTED: hypothetical protein [Homo sapiens] 27 7.3
gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens] 27 7.3
>gi|239755340 PREDICTED: similar to hCG2040250 [Homo sapiens]
Length = 180
Score = 375 bits (962), Expect = e-104
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MITPGTPLPPTPARGTEPAHNCDSSGRIGHHRKRKFTVAPTLRRETKRQKKETGAWTTFR 60
MITPGTPLPPTPARGTEPAHNCDSSGRIGHHRKRKFTVAPTLRRETKRQKKETGAWTTFR
Sbjct: 1 MITPGTPLPPTPARGTEPAHNCDSSGRIGHHRKRKFTVAPTLRRETKRQKKETGAWTTFR 60
Query: 61 GELEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQLLRWDSGAAYTALALVLP 120
GELEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQLLRWDSGAAYTALALVLP
Sbjct: 61 GELEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQLLRWDSGAAYTALALVLP 120
Query: 121 KARAAVRPGAGYLVWCKKPEGDTFGPGHPGVTQTKSIDVSVDEVKTLASLMTYKCAVVGK 180
KARAAVRPGAGYLVWCKKPEGDTFGPGHPGVTQTKSIDVSVDEVKTLASLMTYKCAVVGK
Sbjct: 121 KARAAVRPGAGYLVWCKKPEGDTFGPGHPGVTQTKSIDVSVDEVKTLASLMTYKCAVVGK 180
>gi|31377775 glutamate dehydrogenase 2 [Homo sapiens]
Length = 558
Score = 43.1 bits (100), Expect = 1e-04
Identities = 21/23 (91%), Positives = 21/23 (91%)
Query: 156 SIDVSVDEVKTLASLMTYKCAVV 178
S DVSVDEVK LASLMTYKCAVV
Sbjct: 153 STDVSVDEVKALASLMTYKCAVV 175
>gi|4885281 glutamate dehydrogenase 1 [Homo sapiens]
Length = 558
Score = 43.1 bits (100), Expect = 1e-04
Identities = 21/23 (91%), Positives = 21/23 (91%)
Query: 156 SIDVSVDEVKTLASLMTYKCAVV 178
S DVSVDEVK LASLMTYKCAVV
Sbjct: 153 STDVSVDEVKALASLMTYKCAVV 175
>gi|169213008 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 34.7 bits (78), Expect = 0.045
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 4 PGTP-LPPTPARGTEPAHNCDSSGRIGHHRKRKFTVAPTLRRETKRQKKETGAWTTFRGE 62
PG P LPP P+R + P H L E +RQ ++ + + R
Sbjct: 7 PGLPGLPPAPSRASAPGHL-------------------PLASEPRRQGRKNKSGSAARPS 47
Query: 63 LEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQLLRWDSGAAYTALALVLP 120
EE A R++ S HRVR+PP + + N + W+ +T L LP
Sbjct: 48 EEEAPLPAPI--RQQESSGLHRVRLPPAISVIKAGNPVEDAFPWND-PEWTTPELSLP 102
>gi|169213173 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 34.7 bits (78), Expect = 0.045
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 4 PGTP-LPPTPARGTEPAHNCDSSGRIGHHRKRKFTVAPTLRRETKRQKKETGAWTTFRGE 62
PG P LPP P+R + P H L E +RQ ++ + + R
Sbjct: 7 PGLPGLPPAPSRASAPGHL-------------------PLASEPRRQGRKNKSGSAARPS 47
Query: 63 LEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQLLRWDSGAAYTALALVLP 120
EE A R++ S HRVR+PP + + N + W+ +T L LP
Sbjct: 48 EEEAPLPAPI--RQQESSGLHRVRLPPAISVIKAGNPVEDAFPWND-PEWTTPELSLP 102
>gi|169212850 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 34.7 bits (78), Expect = 0.045
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 4 PGTP-LPPTPARGTEPAHNCDSSGRIGHHRKRKFTVAPTLRRETKRQKKETGAWTTFRGE 62
PG P LPP P+R + P H L E +RQ ++ + + R
Sbjct: 7 PGLPGLPPAPSRASAPGHL-------------------PLASEPRRQGRKNKSGSAARPS 47
Query: 63 LEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQLLRWDSGAAYTALALVLP 120
EE A R++ S HRVR+PP + + N + W+ +T L LP
Sbjct: 48 EEEAPLPAPI--RQQESSGLHRVRLPPAISVIKAGNPVEDAFPWND-PEWTTPELSLP 102
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 30.8 bits (68), Expect = 0.66
Identities = 46/153 (30%), Positives = 57/153 (37%), Gaps = 46/153 (30%)
Query: 9 PPTPARGTEPAHNCDSSGRIGHHRKRKF--TVAPTLRRE-----TKRQKKETGAWTTFRG 61
P TP T H C +G G RK + AP RR K++KK+
Sbjct: 369 PLTPCSVTRSVHRCAPAGERGERRKPNAGGSPAPVRRRPEASPVQKKEKKD--------- 419
Query: 62 ELEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQLLRWDSGAAYTALALVLPK 121
+ER + E R RS R +P A PR R S A TA L PK
Sbjct: 420 --KERENEKEKSALARERSLKKRQSLP---ASPRARLS-----------ASTASEL-SPK 462
Query: 122 ARAAVRPGAGYLVW------CKKPEGDTFGPGH 148
++A RP + W C P GPGH
Sbjct: 463 SKA--RPSSPSTSWHRPASPCPSP-----GPGH 488
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 30.0 bits (66), Expect = 1.1
Identities = 36/130 (27%), Positives = 47/130 (36%), Gaps = 13/130 (10%)
Query: 4 PGTPLPPTPARGTEPAH---NCDSSGRIGHHRKRKFTVAPTLRRETKRQKKETGAWTTFR 60
PG PP PA T P C S G + +T AP RQ+ + GA R
Sbjct: 52 PGNRHPPPPAARTHPGSCRARCPSPAAGG--LRGPWTAAPG------RQRADEGA-AAAR 102
Query: 61 GELEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQL-LRWDSGAAYTALALVL 119
E + + G +R+PP PP R LP L +
Sbjct: 103 PERQRVWARRLPGSAAAPAPGRDALRLPPPPPPPPERPRLPPAGLAGGPADSAPPSPAPA 162
Query: 120 PKARAAVRPG 129
P++R A RPG
Sbjct: 163 PRSRPAPRPG 172
>gi|21735544 mitogen-activated protein kinase kinase 7 [Homo
sapiens]
Length = 419
Score = 30.0 bits (66), Expect = 1.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 63 LEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQLLRWDSGA 110
LE++LS E ++ R A R+ + D +P RPR +L L D G+
Sbjct: 6 LEQKLSRLEAKLKQENREARRRIDLNLDISPQRPRPTLQLPLANDGGS 53
>gi|189083742 neutrophil cytosolic factor 2 [Homo sapiens]
Length = 526
Score = 29.3 bits (64), Expect = 1.9
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 87 IPPDSAPPRPRNSLPQLLRWDSGAAYTALALVLPKARAAVRPGAGYLVWCKKPEGDTF 144
+ P +A P PR P++ R G A+ L +P+ + ++ G +V+ K D +
Sbjct: 220 LQPQAAEPPPRPKTPEIFRALEGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNW 277
>gi|67189970 neutrophil cytosolic factor 2 [Homo sapiens]
Length = 526
Score = 29.3 bits (64), Expect = 1.9
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 87 IPPDSAPPRPRNSLPQLLRWDSGAAYTALALVLPKARAAVRPGAGYLVWCKKPEGDTF 144
+ P +A P PR P++ R G A+ L +P+ + ++ G +V+ K D +
Sbjct: 220 LQPQAAEPPPRPKTPEIFRALEGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNW 277
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 29.3 bits (64), Expect = 1.9
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 44 RETKRQKKETGAWTTFRGELEERLSTAECG--------RRRRLRSAFHRVRIPPDSAPPR 95
++ ++Q++E GE EE S+ RRR LRS R R PP PP
Sbjct: 1352 QQLQQQREEGEEEGEEEGEEEEEESSDSSSSSDGEGALRRRSLRSHARRRRPPPPPPPPP 1411
Query: 96 PRNSLPQ 102
PR P+
Sbjct: 1412 PRAYEPR 1418
>gi|239757439 PREDICTED: hypothetical protein [Homo sapiens]
Length = 243
Score = 28.9 bits (63), Expect = 2.5
Identities = 42/155 (27%), Positives = 52/155 (33%), Gaps = 45/155 (29%)
Query: 5 GTPLPPTPARGTEPAHNCDSSGRIGH-----HRKRKFTVAPT--------LRRETKRQKK 51
G T TE H D++GR H H + +V L+ ET+ K+
Sbjct: 6 GVGATATAGARTESRHQEDANGRNNHESSKDHNPQGLSVVNIHPGLLSFHLQPETREGKR 65
Query: 52 ETGAWTTFRGELEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQLLRWDSGAA 111
E GR RRLRS R P PPR R A
Sbjct: 66 E--------------------GRSRRLRSRRGAGREEPAKPPPRNR-----------PRA 94
Query: 112 YTALALVLPKARAAVRPGAGYLVWCKKPEGDTFGP 146
A + P A +AVR G L C + E F P
Sbjct: 95 AVDAATLTPPAPSAVRSGRS-LAACARVESWHFLP 128
>gi|239751956 PREDICTED: hypothetical protein [Homo sapiens]
Length = 243
Score = 28.9 bits (63), Expect = 2.5
Identities = 42/155 (27%), Positives = 52/155 (33%), Gaps = 45/155 (29%)
Query: 5 GTPLPPTPARGTEPAHNCDSSGRIGH-----HRKRKFTVAPT--------LRRETKRQKK 51
G T TE H D++GR H H + +V L+ ET+ K+
Sbjct: 6 GVGATATAGARTESRHQEDANGRNNHESSKDHNPQGLSVVNIHPGLLSFHLQPETREGKR 65
Query: 52 ETGAWTTFRGELEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQLLRWDSGAA 111
E GR RRLRS R P PPR R A
Sbjct: 66 E--------------------GRSRRLRSRRGAGREEPAKPPPRNR-----------PRA 94
Query: 112 YTALALVLPKARAAVRPGAGYLVWCKKPEGDTFGP 146
A + P A +AVR G L C + E F P
Sbjct: 95 AVDAATLTPPAPSAVRSGRS-LAACARVESWHFLP 128
>gi|239746439 PREDICTED: hypothetical protein XP_002344222 [Homo
sapiens]
Length = 243
Score = 28.9 bits (63), Expect = 2.5
Identities = 42/155 (27%), Positives = 52/155 (33%), Gaps = 45/155 (29%)
Query: 5 GTPLPPTPARGTEPAHNCDSSGRIGH-----HRKRKFTVAPT--------LRRETKRQKK 51
G T TE H D++GR H H + +V L+ ET+ K+
Sbjct: 6 GVGATATAGARTESRHQEDANGRNNHESSKDHNPQGLSVVNIHPGLLSFHLQPETREGKR 65
Query: 52 ETGAWTTFRGELEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQLLRWDSGAA 111
E GR RRLRS R P PPR R A
Sbjct: 66 E--------------------GRSRRLRSRRGAGREEPAKPPPRNR-----------PRA 94
Query: 112 YTALALVLPKARAAVRPGAGYLVWCKKPEGDTFGP 146
A + P A +AVR G L C + E F P
Sbjct: 95 AVDAATLTPPAPSAVRSGRS-LAACARVESWHFLP 128
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 28.9 bits (63), Expect = 2.5
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 7 PLPPTP-ARGTEPAHNCDSSGRIGHHRKRKFTVAPTL--------RRETKRQKKETGAWT 57
P P TP A G E N ++SG R+++ + P L R+ + +KK
Sbjct: 1170 PGPLTPVAEGQEIGMNTETSGTSA--REKELSPPPGLPSKIGSISRQSSLSEKKIPEPSP 1227
Query: 58 TFRGELEERLSTAECGRRRRLRSAFHRVRI-PPDSAPPRPRNSL 100
R + E+ ++ ++ S + PP S P RPRN L
Sbjct: 1228 VTRRKAYEKAEKSKAKEQKHSDSGTSEASLSPPSSPPSRPRNEL 1271
>gi|169163335 PREDICTED: similar to hCG1742442 [Homo sapiens]
Length = 295
Score = 28.5 bits (62), Expect = 3.3
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 75 RRRLRSAFHRVRIPPDSA---PPRPRNSLPQLLRWDSGAAYTALALVLPKARAAVRPGAG 131
RR HR +PP +A PP PR P+ + AA+ +LP A A P
Sbjct: 57 RRGFLHPHHRSFLPPAAAAYCPPSPRLFDPRRRGFLPSAAFCPRGFLLPAAAAFCSPAPA 116
Query: 132 YLVWCKKP 139
+C+ P
Sbjct: 117 --AFCRPP 122
>gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens]
Length = 681
Score = 28.1 bits (61), Expect = 4.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 63 LEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQ 102
LE L ++ G+RR+ A HR P +AP LPQ
Sbjct: 255 LEAHLPSSTAGQRRKQGLAQHREGAAPAAAPSFSERELPQ 294
>gi|39930571 leucine rich repeat containing 56 [Homo sapiens]
Length = 542
Score = 27.7 bits (60), Expect = 5.6
Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 4 PGTPLPPTPARGTEPAHNCDSSGRIGHHRKRKFTVAPTLRRETKRQKKETGAWTTFRGEL 63
PG P T +PA + D G R+ V P R + Q++ A R
Sbjct: 359 PGDPAASTSTPEPDPADSSDFLALAGLRAWREHGVRPLPYRHPESQQEGAVAPWGPRRVP 418
Query: 64 EERLSTAE---------CGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQLLRWDS 108
EE++ AE S+ H V PP PRPR+S RW +
Sbjct: 419 EEQVHQAEPKTPSSPPSLASEPSGTSSQHLVPSPPKH--PRPRDSGSSSPRWST 470
>gi|150418005 protein tyrosine phosphatase, non-receptor type 21
[Homo sapiens]
Length = 1174
Score = 27.7 bits (60), Expect = 5.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 86 RIPPDSAPPRPRNSLPQLLR 105
R PP PPRP NS P L R
Sbjct: 564 RPPPPYPPPRPANSTPDLSR 583
>gi|42519916 forkhead box O3A [Homo sapiens]
Length = 673
Score = 27.7 bits (60), Expect = 5.6
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 46 TKRQKKETGAWTTFRGELEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRP 96
T R E AWT FR ST GR + ++ + D AP P
Sbjct: 296 TSRSSDELDAWTDFRSRTNSNASTVS-GRLSPIMASTELDEVQDDDAPLSP 345
>gi|4503739 forkhead box O3A [Homo sapiens]
Length = 673
Score = 27.7 bits (60), Expect = 5.6
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 46 TKRQKKETGAWTTFRGELEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRP 96
T R E AWT FR ST GR + ++ + D AP P
Sbjct: 296 TSRSSDELDAWTDFRSRTNSNASTVS-GRLSPIMASTELDEVQDDDAPLSP 345
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 27.7 bits (60), Expect = 5.6
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 88 PPDSAPPRPRNSLPQLLRWDSGAAYTALALVLPKARAAVRPGAGYLVWCKKPEGDTFGPG 147
PP PP PR PQ R S A A +P++ P + C P P
Sbjct: 792 PPPPPPPPPRMRSPQPARPGSAAVPGAAFAPIPRSPLPAGPSS-----CTSPRSPLPAPP 846
Query: 148 HPGVTQTKSIDVSV 161
P + + D V
Sbjct: 847 RPFLYRRSPTDSDV 860
>gi|56118234 proline rich 6 [Homo sapiens]
Length = 272
Score = 27.7 bits (60), Expect = 5.6
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 1 MITPGTPLPPTPARGTEPAHNCDSSGRIGHHRKR 34
++ P P PPTPA T A N D +G R+R
Sbjct: 85 LLPPPPPPPPTPATPTSSASNLD----LGEQRER 114
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 27.7 bits (60), Expect = 5.6
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 21/114 (18%)
Query: 10 PTPARGTEPAHNCDSSGRIGHH--------RKRKFTVAPTLRRETKRQKKETGAWTTFRG 61
PT + G++ + N SS R+RK P ++R KR+K+ + +
Sbjct: 192 PTHSEGSDSSSNSSSSSESSSESELEHERSRRRKHKRRPKVKRSKKRRKEASSSEEPRNK 251
Query: 62 EL------EERLSTAECGRRRRLRSAFHRVR--IPPDSAPPRPRNSLPQLLRWD 107
ER T E +R + S+ R + + P+ PP P N LLR D
Sbjct: 252 HAMNPKGHSERSDTNE---KRSVDSSAKREKPVVRPEEIPPVPENRF--LLRRD 300
>gi|38373677 guanine nucleotide-releasing factor 2 isoform b [Homo
sapiens]
Length = 1095
Score = 27.3 bits (59), Expect = 7.3
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 29/124 (23%)
Query: 5 GTPLPPTPARGTEPAHNCDSSGRIGHHRKRKFTVAPTLRRETKRQKKETGAWTTFRGELE 64
G P P +P + + PA D + P RE + K TG +
Sbjct: 229 GRPSPTSPVKPSSPASKPDGPAEL-----------PLTDREVEILNKTTGM-----SQST 272
Query: 65 ERLSTAECGRRRRLRSAFHRVRI----PPDSAPPRPRNSLPQLLRWDSGAAYTALALVLP 120
E L A + +R+ PP + PP+ R S P + T +A+V P
Sbjct: 273 ELLPDATDEEVAPPKPPLPGIRVVDNSPPPALPPKKRQSAP---------SPTRVAVVAP 323
Query: 121 KARA 124
+RA
Sbjct: 324 MSRA 327
>gi|38373675 guanine nucleotide-releasing factor 2 isoform a [Homo
sapiens]
Length = 1077
Score = 27.3 bits (59), Expect = 7.3
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 29/124 (23%)
Query: 5 GTPLPPTPARGTEPAHNCDSSGRIGHHRKRKFTVAPTLRRETKRQKKETGAWTTFRGELE 64
G P P +P + + PA D + P RE + K TG +
Sbjct: 211 GRPSPTSPVKPSSPASKPDGPAEL-----------PLTDREVEILNKTTGM-----SQST 254
Query: 65 ERLSTAECGRRRRLRSAFHRVRI----PPDSAPPRPRNSLPQLLRWDSGAAYTALALVLP 120
E L A + +R+ PP + PP+ R S P + T +A+V P
Sbjct: 255 ELLPDATDEEVAPPKPPLPGIRVVDNSPPPALPPKKRQSAP---------SPTRVAVVAP 305
Query: 121 KARA 124
+RA
Sbjct: 306 MSRA 309
>gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 27.3 bits (59), Expect = 7.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 6 TPLPPTPARGT-EPAHNCDSSGRIGHHRKRKFTVAPTLR 43
TP P PA PA + SG G +RKR ++A LR
Sbjct: 84 TPAPHIPASAQLTPAQSISFSGTSGPNRKRLISMAEALR 122
>gi|239753856 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 27.3 bits (59), Expect = 7.3
Identities = 32/105 (30%), Positives = 39/105 (37%), Gaps = 20/105 (19%)
Query: 4 PGTPLPPTPARGTEPAHNCDSSGRIGHHRKRKFTVAPTLRRETKRQK----KETGAWTTF 59
PGT PP+ RG E S +R VA LRR RQ+ G
Sbjct: 22 PGTAPPPSCGRGPETPSRSQSP-----KLRRVAKVAGQLRRRRLRQRDPPADREGEREVL 76
Query: 60 RGELE---------ERLSTAECGRRRRLRSAFHRVRIPPDSAPPR 95
RG+ E E L+ + S F RV P D+A PR
Sbjct: 77 RGQRESPPPPQLPPELLTNPSGSAIQSSPSRFRRV--PADNAGPR 119
>gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 27.3 bits (59), Expect = 7.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 6 TPLPPTPARGT-EPAHNCDSSGRIGHHRKRKFTVAPTLR 43
TP P PA PA + SG G +RKR ++A LR
Sbjct: 84 TPAPHIPASAQLTPAQSISFSGTSGPNRKRLISMAEALR 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,970,315
Number of Sequences: 37866
Number of extensions: 452044
Number of successful extensions: 1968
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1945
Number of HSP's gapped (non-prelim): 50
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.