BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239755238 PREDICTED: hypothetical protein [Homo sapiens] (142 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239755238 PREDICTED: hypothetical protein [Homo sapiens] 300 3e-82 gi|239749762 PREDICTED: hypothetical protein XP_002347151 [Homo ... 300 3e-82 gi|239744021 PREDICTED: hypothetical protein XP_002343019 [Homo ... 300 3e-82 gi|239755234 PREDICTED: similar to armadillo repeat containing 4... 44 6e-05 gi|239749766 PREDICTED: similar to armadillo repeat containing 4... 44 6e-05 gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 34 0.036 gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 34 0.036 gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 34 0.036 gi|24586667 transcription factor-like protein 4 isoform gamma [H... 33 0.061 gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 32 0.18 gi|78499633 phospholipase C, eta 2 [Homo sapiens] 32 0.23 gi|93588611 angiotensin II receptor-associated protein isoform e... 31 0.30 gi|93588498 angiotensin II receptor-associated protein isoform c... 31 0.30 gi|93588503 angiotensin II receptor-associated protein isoform d... 31 0.30 gi|157671951 solute carrier family 4, anion exchanger, member 3 ... 31 0.39 gi|157671953 solute carrier family 4, anion exchanger, member 3 ... 31 0.39 gi|239744142 PREDICTED: hypothetical protein isoform 1 [Homo sap... 30 0.52 gi|239744140 PREDICTED: hypothetical protein [Homo sapiens] 30 0.52 gi|169191513 PREDICTED: hypothetical protein isoform 1 [Homo sap... 30 0.52 gi|57528101 hypothetical protein LOC728130 [Homo sapiens] 30 0.52 gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 30 0.52 gi|150170710 hypothetical protein LOC728118 [Homo sapiens] 30 0.52 gi|110431370 espin [Homo sapiens] 30 0.88 gi|216548152 RNA pseudouridylate synthase domain containing 3 is... 30 0.88 gi|216548145 RNA pseudouridylate synthase domain containing 3 is... 30 0.88 gi|62122851 small proline-rich protein 2G [Homo sapiens] 30 0.88 gi|113865921 hypothetical protein LOC441457 [Homo sapiens] 30 0.88 gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1 gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1 gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 29 1.1 >gi|239755238 PREDICTED: hypothetical protein [Homo sapiens] Length = 142 Score = 300 bits (767), Expect = 3e-82 Identities = 142/142 (100%), Positives = 142/142 (100%) Query: 1 MSPESDRADSKSVESGATPTATSWISELQDGSKHLILRWLCLGLVSRDRVFRPPLLLCAG 60 MSPESDRADSKSVESGATPTATSWISELQDGSKHLILRWLCLGLVSRDRVFRPPLLLCAG Sbjct: 1 MSPESDRADSKSVESGATPTATSWISELQDGSKHLILRWLCLGLVSRDRVFRPPLLLCAG 60 Query: 61 ACAFAGRPLIDVKASGWLRRSPVGALPGAGFGAHATGQRGPHGATPLFSGSLGLQLPPPC 120 ACAFAGRPLIDVKASGWLRRSPVGALPGAGFGAHATGQRGPHGATPLFSGSLGLQLPPPC Sbjct: 61 ACAFAGRPLIDVKASGWLRRSPVGALPGAGFGAHATGQRGPHGATPLFSGSLGLQLPPPC 120 Query: 121 RAEHLPPVPRKGNQMPPTEGTH 142 RAEHLPPVPRKGNQMPPTEGTH Sbjct: 121 RAEHLPPVPRKGNQMPPTEGTH 142 >gi|239749762 PREDICTED: hypothetical protein XP_002347151 [Homo sapiens] Length = 142 Score = 300 bits (767), Expect = 3e-82 Identities = 142/142 (100%), Positives = 142/142 (100%) Query: 1 MSPESDRADSKSVESGATPTATSWISELQDGSKHLILRWLCLGLVSRDRVFRPPLLLCAG 60 MSPESDRADSKSVESGATPTATSWISELQDGSKHLILRWLCLGLVSRDRVFRPPLLLCAG Sbjct: 1 MSPESDRADSKSVESGATPTATSWISELQDGSKHLILRWLCLGLVSRDRVFRPPLLLCAG 60 Query: 61 ACAFAGRPLIDVKASGWLRRSPVGALPGAGFGAHATGQRGPHGATPLFSGSLGLQLPPPC 120 ACAFAGRPLIDVKASGWLRRSPVGALPGAGFGAHATGQRGPHGATPLFSGSLGLQLPPPC Sbjct: 61 ACAFAGRPLIDVKASGWLRRSPVGALPGAGFGAHATGQRGPHGATPLFSGSLGLQLPPPC 120 Query: 121 RAEHLPPVPRKGNQMPPTEGTH 142 RAEHLPPVPRKGNQMPPTEGTH Sbjct: 121 RAEHLPPVPRKGNQMPPTEGTH 142 >gi|239744021 PREDICTED: hypothetical protein XP_002343019 [Homo sapiens] Length = 142 Score = 300 bits (767), Expect = 3e-82 Identities = 142/142 (100%), Positives = 142/142 (100%) Query: 1 MSPESDRADSKSVESGATPTATSWISELQDGSKHLILRWLCLGLVSRDRVFRPPLLLCAG 60 MSPESDRADSKSVESGATPTATSWISELQDGSKHLILRWLCLGLVSRDRVFRPPLLLCAG Sbjct: 1 MSPESDRADSKSVESGATPTATSWISELQDGSKHLILRWLCLGLVSRDRVFRPPLLLCAG 60 Query: 61 ACAFAGRPLIDVKASGWLRRSPVGALPGAGFGAHATGQRGPHGATPLFSGSLGLQLPPPC 120 ACAFAGRPLIDVKASGWLRRSPVGALPGAGFGAHATGQRGPHGATPLFSGSLGLQLPPPC Sbjct: 61 ACAFAGRPLIDVKASGWLRRSPVGALPGAGFGAHATGQRGPHGATPLFSGSLGLQLPPPC 120 Query: 121 RAEHLPPVPRKGNQMPPTEGTH 142 RAEHLPPVPRKGNQMPPTEGTH Sbjct: 121 RAEHLPPVPRKGNQMPPTEGTH 142 >gi|239755234 PREDICTED: similar to armadillo repeat containing 4 [Homo sapiens] Length = 362 Score = 43.5 bits (101), Expect = 6e-05 Identities = 21/36 (58%), Positives = 24/36 (66%) Query: 25 ISELQDGSKHLILRWLCLGLVSRDRVFRPPLLLCAG 60 ++ELQDGS H L W CLGL D +F PLLL AG Sbjct: 318 LTELQDGSAHHTLSWPCLGLALGDSMFWMPLLLSAG 353 >gi|239749766 PREDICTED: similar to armadillo repeat containing 4 [Homo sapiens] Length = 367 Score = 43.5 bits (101), Expect = 6e-05 Identities = 21/36 (58%), Positives = 24/36 (66%) Query: 25 ISELQDGSKHLILRWLCLGLVSRDRVFRPPLLLCAG 60 ++ELQDGS H L W CLGL D +F PLLL AG Sbjct: 323 LTELQDGSAHHTLSWPCLGLALGDSMFWMPLLLSAG 358 >gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] Length = 548 Score = 34.3 bits (77), Expect = 0.036 Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 16/76 (21%) Query: 77 WLRRSPVGALPGAGFGAHATGQRGPH------GATPLFSG------SLGLQLPPPCRAEH 124 W++ P P G H G GP G+TP+ SG G+ PPP Sbjct: 424 WMQPPP----PPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMP 479 Query: 125 LPPVPRKGNQMPPTEG 140 PP P G PP G Sbjct: 480 PPPPPPSGQPPPPPSG 495 >gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] Length = 638 Score = 34.3 bits (77), Expect = 0.036 Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 16/76 (21%) Query: 77 WLRRSPVGALPGAGFGAHATGQRGPH------GATPLFSG------SLGLQLPPPCRAEH 124 W++ P P G H G GP G+TP+ SG G+ PPP Sbjct: 424 WMQPPP----PPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMP 479 Query: 125 LPPVPRKGNQMPPTEG 140 PP P G PP G Sbjct: 480 PPPPPPSGQPPPPPSG 495 >gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] Length = 639 Score = 34.3 bits (77), Expect = 0.036 Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 16/76 (21%) Query: 77 WLRRSPVGALPGAGFGAHATGQRGPH------GATPLFSG------SLGLQLPPPCRAEH 124 W++ P P G H G GP G+TP+ SG G+ PPP Sbjct: 424 WMQPPP----PPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMP 479 Query: 125 LPPVPRKGNQMPPTEG 140 PP P G PP G Sbjct: 480 PPPPPPSGQPPPPPSG 495 >gi|24586667 transcription factor-like protein 4 isoform gamma [Homo sapiens] Length = 298 Score = 33.5 bits (75), Expect = 0.061 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 77 WLRRSPVGALPGAGFGAHATGQRGP--HGATPLFSGSLGLQLPPPCRAEHLPPVPRK 131 W++ SPVGA G G A +RG GA+ L S L +P CR + P K Sbjct: 12 WVKASPVGAHAGEGRAGRARARRGAGRRGASLLSPKSPTLSVPRGCREDSSHPACAK 68 >gi|4885407 hyperpolarization activated cyclic nucleotide-gated potassium channel 4 [Homo sapiens] Length = 1203 Score = 32.0 bits (71), Expect = 0.18 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 81 SPVGALPGAGFG--AHATGQ-RGPHGATPLFSGSLGLQLPPPCRAEHLPPVPRKGNQMPP 137 SPVG P G H+ G R A P SGS G L PP + P VP++ P Sbjct: 1015 SPVGFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPL 1074 Query: 138 TEG 140 T G Sbjct: 1075 TPG 1077 >gi|78499633 phospholipase C, eta 2 [Homo sapiens] Length = 1416 Score = 31.6 bits (70), Expect = 0.23 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 87 PGAGFGAHATGQRGPHGATPLFSGSLGLQ--LPPPCRAEHLPPVPRKGNQMPP 137 PG G A Q GP +P + L Q LPP C E + P G PP Sbjct: 966 PGPGPAPEAPAQEGPGSGSPRDTRPLSTQRPLPPLCSLETIAEEPAPGPGPPP 1018 >gi|93588611 angiotensin II receptor-associated protein isoform e [Homo sapiens] Length = 147 Score = 31.2 bits (69), Expect = 0.30 Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 10/77 (12%) Query: 34 HLILRWLCLGLVSRDRVFRPPLLLCAGACAFAGRPLIDVKASGWLRRSPVGALPGAGFGA 93 H ILR LCLG + + R C AG SGWL LPG Sbjct: 56 HCILRLLCLGQLHHPGLGRV-------GCGSAGLHRRHKHVSGWLAGH---HLPGHRAHQ 105 Query: 94 HATGQRGPHGATPLFSG 110 H PHG PL+ G Sbjct: 106 HLLPAGQPHGHGPLWRG 122 >gi|93588498 angiotensin II receptor-associated protein isoform c [Homo sapiens] Length = 111 Score = 31.2 bits (69), Expect = 0.30 Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 10/77 (12%) Query: 34 HLILRWLCLGLVSRDRVFRPPLLLCAGACAFAGRPLIDVKASGWLRRSPVGALPGAGFGA 93 H ILR LCLG + + R C AG SGWL LPG Sbjct: 12 HCILRLLCLGQLHHPGLGRV-------GCGSAGLHRRHKHVSGWLAGH---HLPGHRAHQ 61 Query: 94 HATGQRGPHGATPLFSG 110 H PHG PL+ G Sbjct: 62 HLLPAGQPHGHGPLWRG 78 >gi|93588503 angiotensin II receptor-associated protein isoform d [Homo sapiens] Length = 155 Score = 31.2 bits (69), Expect = 0.30 Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 10/77 (12%) Query: 34 HLILRWLCLGLVSRDRVFRPPLLLCAGACAFAGRPLIDVKASGWLRRSPVGALPGAGFGA 93 H ILR LCLG + + R C AG SGWL LPG Sbjct: 56 HCILRLLCLGQLHHPGLGRV-------GCGSAGLHRRHKHVSGWLAGH---HLPGHRAHQ 105 Query: 94 HATGQRGPHGATPLFSG 110 H PHG PL+ G Sbjct: 106 HLLPAGQPHGHGPLWRG 122 >gi|157671951 solute carrier family 4, anion exchanger, member 3 isoform 1 [Homo sapiens] Length = 1232 Score = 30.8 bits (68), Expect = 0.39 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 4/71 (5%) Query: 71 DVKASGWLRRSPVGALPGAGFGAH-ATGQRGPHGATPLFSGSLGLQLPPPCRAEHLPPVP 129 D K SG+ R+P + + G H T GP GA P + LG P H P Sbjct: 430 DDKDSGFFPRNPSSSSMNSVLGNHHPTPSHGPDGAVPTMADDLG---EPAPLWPHDPDAK 486 Query: 130 RKGNQMPPTEG 140 K MP +G Sbjct: 487 EKPLHMPGGDG 497 >gi|157671953 solute carrier family 4, anion exchanger, member 3 isoform 2 [Homo sapiens] Length = 1259 Score = 30.8 bits (68), Expect = 0.39 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 4/71 (5%) Query: 71 DVKASGWLRRSPVGALPGAGFGAH-ATGQRGPHGATPLFSGSLGLQLPPPCRAEHLPPVP 129 D K SG+ R+P + + G H T GP GA P + LG P H P Sbjct: 457 DDKDSGFFPRNPSSSSMNSVLGNHHPTPSHGPDGAVPTMADDLG---EPAPLWPHDPDAK 513 Query: 130 RKGNQMPPTEG 140 K MP +G Sbjct: 514 EKPLHMPGGDG 524 >gi|239744142 PREDICTED: hypothetical protein isoform 1 [Homo sapiens] Length = 629 Score = 30.4 bits (67), Expect = 0.52 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 111 SLGLQLPPPCR-AEHLPPVPRKGNQMPPTEGTH 142 S GL LPPP A LPP+ +GN P +G H Sbjct: 274 SQGLPLPPPPPPAAQLPPIVSQGNAGPWPQGAH 306 >gi|239744140 PREDICTED: hypothetical protein [Homo sapiens] Length = 878 Score = 30.4 bits (67), Expect = 0.52 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 111 SLGLQLPPPCR-AEHLPPVPRKGNQMPPTEGTH 142 S GL LPPP A LPP+ +GN P +G H Sbjct: 274 SQGLPLPPPPPPAAQLPPIVSQGNAGPWPQGAH 306 >gi|169191513 PREDICTED: hypothetical protein isoform 1 [Homo sapiens] Length = 878 Score = 30.4 bits (67), Expect = 0.52 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 111 SLGLQLPPPCR-AEHLPPVPRKGNQMPPTEGTH 142 S GL LPPP A LPP+ +GN P +G H Sbjct: 274 SQGLPLPPPPPPAAQLPPIVSQGNAGPWPQGAH 306 >gi|57528101 hypothetical protein LOC728130 [Homo sapiens] Length = 557 Score = 30.4 bits (67), Expect = 0.52 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 111 SLGLQLPPPCR-AEHLPPVPRKGNQMPPTEGTH 142 S GL LPPP A LPP+ +GN P +G H Sbjct: 202 SQGLPLPPPPPPAAQLPPIVSQGNAGPWPQGAH 234 >gi|148806874 hypothetical protein LOC54754 [Homo sapiens] Length = 756 Score = 30.4 bits (67), Expect = 0.52 Identities = 14/32 (43%), Positives = 17/32 (53%) Query: 111 SLGLQLPPPCRAEHLPPVPRKGNQMPPTEGTH 142 S GL LPPP A + P+ GN P +G H Sbjct: 152 SHGLPLPPPPPAAQVAPIVSPGNARPWPQGAH 183 >gi|150170710 hypothetical protein LOC728118 [Homo sapiens] Length = 878 Score = 30.4 bits (67), Expect = 0.52 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Query: 111 SLGLQLPPPCR-AEHLPPVPRKGNQMPPTEGTH 142 S GL LPPP A LPP+ +GN P +G H Sbjct: 274 SQGLPLPPPPPPAAQLPPIVSQGNAGPWPQGAH 306 >gi|110431370 espin [Homo sapiens] Length = 854 Score = 29.6 bits (65), Expect = 0.88 Identities = 12/28 (42%), Positives = 15/28 (53%) Query: 110 GSLGLQLPPPCRAEHLPPVPRKGNQMPP 137 G++G PPP PP P G Q+PP Sbjct: 423 GTIGKPTPPPPPPSFPPPPPPPGTQLPP 450 >gi|216548152 RNA pseudouridylate synthase domain containing 3 isoform 2 [Homo sapiens] Length = 336 Score = 29.6 bits (65), Expect = 0.88 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Query: 66 GRPLIDVKASGWLRRSPVGALP-GAGFGAHATGQRGPHGATPLFSGSLGLQ 115 GR ++ SGW R V +P AGFG A QR P G+ SG LG Q Sbjct: 11 GRRVLGRFWSGWRRGLGVRPVPEDAGFGTEARHQRQPRGSCQR-SGPLGDQ 60 >gi|216548145 RNA pseudouridylate synthase domain containing 3 isoform 1 [Homo sapiens] Length = 351 Score = 29.6 bits (65), Expect = 0.88 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Query: 66 GRPLIDVKASGWLRRSPVGALP-GAGFGAHATGQRGPHGATPLFSGSLGLQ 115 GR ++ SGW R V +P AGFG A QR P G+ SG LG Q Sbjct: 11 GRRVLGRFWSGWRRGLGVRPVPEDAGFGTEARHQRQPRGSCQR-SGPLGDQ 60 >gi|62122851 small proline-rich protein 2G [Homo sapiens] Length = 73 Score = 29.6 bits (65), Expect = 0.88 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Query: 116 LPPPCRAEHLPPVPRKGNQMPPTE 139 LPPPC EH PP P + ++ PP + Sbjct: 37 LPPPCPPEHCPPPPCQ-DKCPPVQ 59 >gi|113865921 hypothetical protein LOC441457 [Homo sapiens] Length = 492 Score = 29.6 bits (65), Expect = 0.88 Identities = 14/32 (43%), Positives = 17/32 (53%) Query: 111 SLGLQLPPPCRAEHLPPVPRKGNQMPPTEGTH 142 S GL LPPP A + P+ GN P +G H Sbjct: 152 SHGLPLPPPPPAAQVAPIVSPGNAGPWPQGAH 183 >gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] Length = 556 Score = 29.3 bits (64), Expect = 1.1 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 94 HATGQRGPHGATPLFSGSLGLQLPPPCRAEHLPPVPRK 131 H G+ P G TP GL PPP LPP PR+ Sbjct: 430 HDQGRDAPPGPTP---ARRGLPRPPPPPPPPLPPPPRR 464 >gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] Length = 884 Score = 29.3 bits (64), Expect = 1.1 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 94 HATGQRGPHGATPLFSGSLGLQLPPPCRAEHLPPVPRK 131 H G+ P G TP GL PPP LPP PR+ Sbjct: 758 HDQGRDAPPGPTP---ARRGLPRPPPPPPPPLPPPPRR 792 >gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo sapiens] Length = 884 Score = 29.3 bits (64), Expect = 1.1 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Query: 94 HATGQRGPHGATPLFSGSLGLQLPPPCRAEHLPPVPRK 131 H G+ P G TP GL PPP LPP PR+ Sbjct: 758 HDQGRDAPPGPTP---ARRGLPRPPPPPPPPLPPPPRR 792 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.137 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,707,454 Number of Sequences: 37866 Number of extensions: 422754 Number of successful extensions: 1588 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 69 Number of HSP's that attempted gapping in prelim test: 1506 Number of HSP's gapped (non-prelim): 149 length of query: 142 length of database: 18,247,518 effective HSP length: 92 effective length of query: 50 effective length of database: 14,763,846 effective search space: 738192300 effective search space used: 738192300 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.