Guide to the Human Genome
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Name: LOC100291871 Sequence: fasta or formatted (362aa) NCBI GI: 239755234
Description:

PREDICTED: similar to armadillo repeat containing 4

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         20           3
 C cysteine            1.7          6           1
 D aspartate           3.9         14           1
 E glutamate           9.4         34           4
 F phenylalanine       1.9          7           1
 G glycine             8.8         32           2
 H histidine           2.5          9           2
 I isoleucine          3.3         12           2
 K lysine              7.7         28           2
 L leucine            13.3         48           3
 M methionine          1.1          4           1
 N asparagine          3.6         13           1
 P proline             5.2         19           2
 Q glutamine           5.2         19           3
 R arginine            5.8         21           2
 S serine              8.8         32           3
 T threonine           4.1         15           2
 V valine              3.9         14           1
 W tryptophan          2.5          9           1
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to armadillo repeat containing 4... 
LOC100294419          0.920   PREDICTED: similar to armadillo repeat containing 4...
LOC100288039          0.394   PREDICTED: hypothetical protein XP_002343006 
ARMC4                 0.384   armadillo repeat containing 4 
BRD2                  0.027   bromodomain containing 2 
BRD2                  0.027   bromodomain containing 2 
LOC100293715          0.027   PREDICTED: hypothetical protein 
LOC100290684          0.027   PREDICTED: hypothetical protein XP_002347151 
LOC100289517          0.027   PREDICTED: hypothetical protein XP_002343019 
SDCCAG10              0.021   serologically defined colon cancer antigen 10 
LOC645490             0.015   PREDICTED: similar to hCG1991922 
CDC2L2                0.014   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.014   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.014   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.014   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.014   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.014   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.014   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.014   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CT47A1                0.014   cancer/testis antigen family 47, member A1 
CT47A2                0.014   cancer/testis antigen family 47, member A2 
CT47A3                0.014   cancer/testis antigen family 47, member A3 
CT47A4                0.014   cancer/testis antigen family 47, member A4 
CT47A5                0.014   cancer/testis antigen family 47, member A5 
CT47A6                0.014   cancer/testis antigen family 47, member A6 
CT47A7                0.014   cancer/testis antigen family 47, member A7 
CT47A8                0.014   cancer/testis antigen family 47, member A8 
CT47A9                0.014   cancer/testis antigen family 47, member A9 
CT47A10               0.014   cancer/testis antigen family 47, member A10 
CT47A11               0.014   cancer/testis antigen family 47, member A11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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