Guide to the Human Genome
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Name: LOC100289517 Sequence: fasta or formatted (142aa) NCBI GI: 239744021
Description:

PREDICTED: hypothetical protein XP_002343019

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         14           1
 C cysteine            2.8          4           1
 D aspartate           3.5          5           1
 E glutamate           3.5          5           1
 F phenylalanine       2.8          4           1
 G glycine            12.0         17           1
 H histidine           3.5          5           1
 I isoleucine          2.1          3           1
 K lysine              2.8          4           1
 L leucine            12.0         17           3
 M methionine          1.4          2           1
 N asparagine          0.7          1           1
 P proline            12.0         17           3
 Q glutamine           2.8          4           1
 R arginine            7.7         11           2
 S serine              9.2         13           1
 T threonine           4.9          7           1
 V valine              4.2          6           1
 W tryptophan          2.1          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343019 
LOC100293715          1.000   PREDICTED: hypothetical protein 
LOC100290684          1.000   PREDICTED: hypothetical protein XP_002347151 
LOC100291871          0.069   PREDICTED: similar to armadillo repeat containing 4...
LOC100294419          0.069   PREDICTED: similar to armadillo repeat containing 4...
SF1                   0.033   splicing factor 1 isoform 3 
SF1                   0.033   splicing factor 1 isoform 2 
SF1                   0.033   splicing factor 1 isoform 1 
MLX                   0.029   transcription factor-like protein 4 isoform gamma [H...
HCN4                  0.025   hyperpolarization activated cyclic nucleotide-gated p...
PLCH2                 0.025   phospholipase C, eta 2 
AGTRAP                0.022   angiotensin II receptor-associated protein isoform e...
AGTRAP                0.022   angiotensin II receptor-associated protein isoform c...
AGTRAP                0.022   angiotensin II receptor-associated protein isoform d...
SLC4A3                0.022   solute carrier family 4, anion exchanger, member 3 ...
SLC4A3                0.022   solute carrier family 4, anion exchanger, member 3 ...
FAM22E                0.018   PREDICTED: hypothetical protein isoform 1 
FAM22E                0.018   PREDICTED: hypothetical protein 
FAM22B                0.018   PREDICTED: hypothetical protein isoform 1 
FAM22D                0.018   hypothetical protein LOC728130 
FAM22F                0.018   hypothetical protein LOC54754 
FAM22A                0.018   hypothetical protein LOC728118 
ESPN                  0.018   espin 
RPUSD3                0.018   RNA pseudouridylate synthase domain containing 3 is...
RPUSD3                0.018   RNA pseudouridylate synthase domain containing 3 is...
SPRR2G                0.018   small proline-rich protein 2G 
FAM22G                0.018   hypothetical protein LOC441457 
LOC100293662          0.015   PREDICTED: hypothetical protein 
LOC100289444          0.015   PREDICTED: hypothetical protein 
LOC100289444          0.015   PREDICTED: hypothetical protein XP_002342754 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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