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Search of human proteins with 239755104
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755104 PREDICTED: hypothetical protein [Homo sapiens]
(191 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755104 PREDICTED: hypothetical protein [Homo sapiens] 389 e-108
gi|239749617 PREDICTED: hypothetical protein XP_002347103 [Homo ... 389 e-108
gi|239743886 PREDICTED: hypothetical protein XP_002342986 [Homo ... 387 e-108
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 39 0.004
gi|55741655 anoctamin 8 [Homo sapiens] 38 0.006
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 38 0.006
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 38 0.006
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 38 0.006
gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ... 37 0.008
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 37 0.008
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] 36 0.023
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] 36 0.023
gi|40806209 WW domain containing E3 ubiquitin protein ligase 2 i... 35 0.030
gi|40806207 WW domain containing E3 ubiquitin protein ligase 2 i... 35 0.030
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 35 0.030
gi|33286436 gametogenetin [Homo sapiens] 35 0.030
gi|21314684 single stranded DNA binding protein 3 isoform b [Hom... 35 0.039
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 35 0.039
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 35 0.051
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ... 35 0.051
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 35 0.051
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 35 0.051
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens] 35 0.051
gi|20336477 B-cell CLL/lymphoma 7C [Homo sapiens] 34 0.067
gi|169208912 PREDICTED: hypothetical protein [Homo sapiens] 34 0.088
gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] 34 0.088
gi|169208667 PREDICTED: hypothetical protein [Homo sapiens] 34 0.088
gi|169208084 PREDICTED: hypothetical protein [Homo sapiens] 34 0.088
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 34 0.088
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 34 0.088
>gi|239755104 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 389 bits (998), Expect = e-108
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MLGPGVPGRPNLSFLSWPLILFLLLNLCHSATKSIQASLISALRARSAELIGRAVLPRPA 60
MLGPGVPGRPNLSFLSWPLILFLLLNLCHSATKSIQASLISALRARSAELIGRAVLPRPA
Sbjct: 1 MLGPGVPGRPNLSFLSWPLILFLLLNLCHSATKSIQASLISALRARSAELIGRAVLPRPA 60
Query: 61 GSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQAQP 120
GSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQAQP
Sbjct: 61 GSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQAQP 120
Query: 121 LGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLSLQRRVCGRERDAGREKRGEGEHL 180
LGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLSLQRRVCGRERDAGREKRGEGEHL
Sbjct: 121 LGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLSLQRRVCGRERDAGREKRGEGEHL 180
Query: 181 FISFPPSICHL 191
FISFPPSICHL
Sbjct: 181 FISFPPSICHL 191
>gi|239749617 PREDICTED: hypothetical protein XP_002347103 [Homo
sapiens]
Length = 191
Score = 389 bits (998), Expect = e-108
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MLGPGVPGRPNLSFLSWPLILFLLLNLCHSATKSIQASLISALRARSAELIGRAVLPRPA 60
MLGPGVPGRPNLSFLSWPLILFLLLNLCHSATKSIQASLISALRARSAELIGRAVLPRPA
Sbjct: 1 MLGPGVPGRPNLSFLSWPLILFLLLNLCHSATKSIQASLISALRARSAELIGRAVLPRPA 60
Query: 61 GSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQAQP 120
GSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQAQP
Sbjct: 61 GSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQAQP 120
Query: 121 LGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLSLQRRVCGRERDAGREKRGEGEHL 180
LGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLSLQRRVCGRERDAGREKRGEGEHL
Sbjct: 121 LGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLSLQRRVCGRERDAGREKRGEGEHL 180
Query: 181 FISFPPSICHL 191
FISFPPSICHL
Sbjct: 181 FISFPPSICHL 191
>gi|239743886 PREDICTED: hypothetical protein XP_002342986 [Homo
sapiens]
Length = 191
Score = 387 bits (994), Expect = e-108
Identities = 190/191 (99%), Positives = 190/191 (99%)
Query: 1 MLGPGVPGRPNLSFLSWPLILFLLLNLCHSATKSIQASLISALRARSAELIGRAVLPRPA 60
MLGPGVPGRPN SFLSWPLILFLLLNLCHSATKSIQASLISALRARSAELIGRAVLPRPA
Sbjct: 1 MLGPGVPGRPNFSFLSWPLILFLLLNLCHSATKSIQASLISALRARSAELIGRAVLPRPA 60
Query: 61 GSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQAQP 120
GSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQAQP
Sbjct: 61 GSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQAQP 120
Query: 121 LGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLSLQRRVCGRERDAGREKRGEGEHL 180
LGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLSLQRRVCGRERDAGREKRGEGEHL
Sbjct: 121 LGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLSLQRRVCGRERDAGREKRGEGEHL 180
Query: 181 FISFPPSICHL 191
FISFPPSICHL
Sbjct: 181 FISFPPSICHL 191
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 38.5 bits (88), Expect = 0.004
Identities = 40/124 (32%), Positives = 49/124 (39%), Gaps = 15/124 (12%)
Query: 59 PAGSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVES---KSKVGSAGQRPGTMREARQSG 115
P + PG G AGP G EPR AA + +S V S + P + A G
Sbjct: 11 PGTLMEPGRG------AGPAGMAEPRAKAARPGPQRFLRRSVVESDQEEPPGLEAAEAPG 64
Query: 116 LQA-QPLGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLSLQRRVCGRERDAGREKR 174
Q QPL R ++ L T R ++ P AP P L Q G DAG E
Sbjct: 65 PQPPQPL-----QRRVLLLCKTRRLIAERARGRPAAPAPAALVAQPGAPGAPADAGPEPV 119
Query: 175 GEGE 178
G E
Sbjct: 120 GTQE 123
Score = 30.8 bits (68), Expect = 0.74
Identities = 31/105 (29%), Positives = 40/105 (38%), Gaps = 25/105 (23%)
Query: 59 PAGSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQA 118
PA S P S T AG PG+ P +E+ + + P L
Sbjct: 1401 PATSTMPEPASGTASQAGGPGT----PQGLTSELETSQPLAETHEAP----------LAV 1446
Query: 119 QPLGILRDPRLIMRLNPTPR---TRDSKSPS---PPTAPDPLPLS 157
QPL + P P P TRD+ +P PP AP+P P S
Sbjct: 1447 QPLVVGLAP-----CTPAPEAASTRDASAPREPLPPPAPEPSPHS 1486
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 37.7 bits (86), Expect = 0.006
Identities = 37/97 (38%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 60 AGSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQA- 118
AG LFP GG T+ G G+G RP + S S QR G + EA L+A
Sbjct: 1051 AGKLFPFGG--TRAEPGSNGAG-----GQARPDGTPSSGSSRVQRSGPVDEALAEELEAP 1103
Query: 119 QPLGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLP 155
+P L P RTR S+SP+PP P PLP
Sbjct: 1104 RPEEEGSGTALAPVGAPALRTRRSRSPAPP-PPMPLP 1139
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 37.7 bits (86), Expect = 0.006
Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 32/125 (25%)
Query: 52 GRAVLPR----PAGSLFPGGG--SWTQLFAGP---PGSGEPRPAAANRPVESKSKVGSAG 102
G+ + PR PA S PG G +W +L A P S PR A A+ P G
Sbjct: 50 GKDLKPRCGRGPAHSPDPGEGCEAWRRLSADRWPRPASLSPRAALASAP----------G 99
Query: 103 QRPGTMREARQSGLQAQPLGILRDPRLIMRLNPTP--------RTRDSK--SPSPPTAPD 152
Q+P + ARQ+ L G+ PR + L+ P R + + +PSPP P+
Sbjct: 100 QKP---QPARQAQLPRPVSGVRPPPRGRVGLSQAPGRPLGACARAKGIRLVNPSPPRPPE 156
Query: 153 PLPLS 157
P+P S
Sbjct: 157 PIPAS 161
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 37.7 bits (86), Expect = 0.006
Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 32/125 (25%)
Query: 52 GRAVLPR----PAGSLFPGGG--SWTQLFAGP---PGSGEPRPAAANRPVESKSKVGSAG 102
G+ + PR PA S PG G +W +L A P S PR A A+ P G
Sbjct: 50 GKDLKPRCGRGPAHSPDPGEGCEAWRRLSADRWPRPASLSPRAALASAP----------G 99
Query: 103 QRPGTMREARQSGLQAQPLGILRDPRLIMRLNPTP--------RTRDSK--SPSPPTAPD 152
Q+P + ARQ+ L G+ PR + L+ P R + + +PSPP P+
Sbjct: 100 QKP---QPARQAQLPRPVSGVRPPPRGRVGLSQAPGRPLGACARAKGIRLVNPSPPRPPE 156
Query: 153 PLPLS 157
P+P S
Sbjct: 157 PIPAS 161
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 37.7 bits (86), Expect = 0.006
Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 32/125 (25%)
Query: 52 GRAVLPR----PAGSLFPGGG--SWTQLFAGP---PGSGEPRPAAANRPVESKSKVGSAG 102
G+ + PR PA S PG G +W +L A P S PR A A+ P G
Sbjct: 50 GKDLKPRCGRGPAHSPDPGEGCEAWRRLSADRWPRPASLSPRAALASAP----------G 99
Query: 103 QRPGTMREARQSGLQAQPLGILRDPRLIMRLNPTP--------RTRDSK--SPSPPTAPD 152
Q+P + ARQ+ L G+ PR + L+ P R + + +PSPP P+
Sbjct: 100 QKP---QPARQAQLPRPVSGVRPPPRGRVGLSQAPGRPLGACARAKGIRLVNPSPPRPPE 156
Query: 153 PLPLS 157
P+P S
Sbjct: 157 PIPAS 161
>gi|239758067 PREDICTED: similar to facioscapulohumeral muscular
dystrophy [Homo sapiens]
Length = 468
Score = 37.4 bits (85), Expect = 0.008
Identities = 41/132 (31%), Positives = 54/132 (40%), Gaps = 30/132 (22%)
Query: 75 AGPPGSGEPRPAAANRPVESKSKV-GSAGQRPGTMREA----RQSGLQAQPLGILRDPRL 129
A PGS PAA R V++ + G+ G+ PG + A R G QA G + PRL
Sbjct: 329 AETPGSPGAHPAAGRRAVQTSAPAPGATGRAPGCLASAPAMRRPLGAQA---GEVELPRL 385
Query: 130 IMRLNPTPRTRDSKSPSPPTAPDP---------LPLSLQRR---VCGRERDAGREKRGEG 177
++ PTP R P A P P++L R V R+ AG G G
Sbjct: 386 LV---PTPPRRPGDPGPSPNADSPGKRVGQAHLCPVALLERAQAVPPRKGPAGCHPAGPG 442
Query: 178 EHLFISFPPSIC 189
PP +C
Sbjct: 443 -------PPGMC 447
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 37.4 bits (85), Expect = 0.008
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 57 PRPAGSLFPGGGSWTQLFAGPPGSGEPRPAAA-------NRPVESKSKVGSAGQ--RPGT 107
P PA + P + P + P PAAA P GS G RPG
Sbjct: 22 PAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTGTGGPGVGSGGAGSGGDPARPGL 81
Query: 108 MREARQSGLQAQPLGILRDPRL-------IMRLNPTPRTRDSKSPSPPTAP 151
++ R S +AQ G+ R +L + N T + K+P PPTAP
Sbjct: 82 SQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAP 132
>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 35.8 bits (81), Expect = 0.023
Identities = 34/102 (33%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 79 GSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQAQPLGILRDPRLI-MRLNPTP 137
G G PR AAA+ V G+A RP + AR L D R R P+P
Sbjct: 149 GLGGPRVAAASELVRRGLASGAARARPASPAPARLLPLAVGASAAAGDTRRTEARAEPSP 208
Query: 138 RTRDSKSPSPPTAPDPLPLSLQRRVCGRERDAGREKRGEGEH 179
R + AP P L +R CG R AG + G+G H
Sbjct: 209 SRRRRRR---CCAPLPGSLPARRPGCGGRR-AGGARAGQGAH 246
>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
Length = 1159
Score = 35.8 bits (81), Expect = 0.023
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 4 PGVPGRPNLSFLSWPLILFLLLNLCHSATKSIQASLISALRARSAELIGRAVLPRPAGSL 63
PG P P L+L LLL C +A +S + + A+L R PAG
Sbjct: 22 PGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP----HAQLT-RVPRSPPAGRA 76
Query: 64 FPGGGSWTQLFAGPPGSGEPRPAAANRPVE 93
PGGG Q PG+ P P A P E
Sbjct: 77 EPGGGEDRQARGTEPGAPGPSPGPAPGPGE 106
>gi|40806209 WW domain containing E3 ubiquitin protein ligase 2
isoform 3 [Homo sapiens]
Length = 335
Score = 35.4 bits (80), Expect = 0.030
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 37 ASLISALRARSAELIGRAVLPR-----PAGSLFPGGGSWTQLFAGP-----PGSGEPRPA 86
++L + S + G AV P P+ + F GG S T +G P +GE P
Sbjct: 155 SALTDGSQLPSRDSSGTAVAPENRHQPPSTNCF-GGRSRTHRHSGASARTTPATGEQSPG 213
Query: 87 AANRPVESKSKVGSAGQRPGTMREARQSGLQAQP---LGILRDPRLIMRLNPTPRTRDSK 143
A +R + G +G GT+ + + + +G+ P + + P P T
Sbjct: 214 ARSRHRQPVKNSGHSGLANGTVNDEPTTATDPEEPSVVGVTSPPAAPLSVTPNPNTTSLP 273
Query: 144 SPSPPT------------------APDPLPLSLQRR 161
+P+ P APD LP ++R
Sbjct: 274 APATPAEGEEPSTSGTQQLPAAAQAPDALPAGWEQR 309
>gi|40806207 WW domain containing E3 ubiquitin protein ligase 2
isoform 1 [Homo sapiens]
Length = 870
Score = 35.4 bits (80), Expect = 0.030
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 37 ASLISALRARSAELIGRAVLPR-----PAGSLFPGGGSWTQLFAGP-----PGSGEPRPA 86
++L + S + G AV P P+ + F GG S T +G P +GE P
Sbjct: 155 SALTDGSQLPSRDSSGTAVAPENRHQPPSTNCF-GGRSRTHRHSGASARTTPATGEQSPG 213
Query: 87 AANRPVESKSKVGSAGQRPGTMREARQSGLQAQP---LGILRDPRLIMRLNPTPRTRDSK 143
A +R + G +G GT+ + + + +G+ P + + P P T
Sbjct: 214 ARSRHRQPVKNSGHSGLANGTVNDEPTTATDPEEPSVVGVTSPPAAPLSVTPNPNTTSLP 273
Query: 144 SPSPPT------------------APDPLPLSLQRR 161
+P+ P APD LP ++R
Sbjct: 274 APATPAEGEEPSTSGTQQLPAAAQAPDALPAGWEQR 309
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 35.4 bits (80), Expect = 0.030
Identities = 33/100 (33%), Positives = 38/100 (38%), Gaps = 16/100 (16%)
Query: 58 RPAGSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQ 117
RPAG GG Q PGS P P N+ + S + A R G EA +
Sbjct: 110 RPAGQRDVAGGKTGQ----GPGSRAPSPRLPNKTI-SGPLIPPASPRLGNTSEAHGAART 164
Query: 118 AQPLGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLS 157
A P P + PTP P PP P PLP S
Sbjct: 165 APPR-----PNVPAPPPPTP------PPPPPPLPPPLPSS 193
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 35.4 bits (80), Expect = 0.030
Identities = 40/138 (28%), Positives = 49/138 (35%), Gaps = 23/138 (16%)
Query: 57 PRPAGSLFPGGGSWTQLFAGPP-------------GSGEP---RPAAANRPVESKSKVGS 100
P PAG+L PG W Q AG P G G+P RP P S +
Sbjct: 98 PAPAGTLLPGPSKW-QKPAGTPVPRIRRLLEASHRGQGDPPSLRPLKPPPPPRQLSVKDT 156
Query: 101 AGQRPGTMREARQSGLQAQPLGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLSLQR 160
+ P ++ PL R P R+ P T SPPT P + Q
Sbjct: 157 VPRAPSQFPPPLETWKPPPPLPSERQP-ADRRITPALAT----PASPPTESQAGPRN-QG 210
Query: 161 RVCGRERDAGREKRGEGE 178
+ GR R GEGE
Sbjct: 211 QTAGRARGGAPPHAGEGE 228
>gi|21314684 single stranded DNA binding protein 3 isoform b [Homo
sapiens]
Length = 368
Score = 35.0 bits (79), Expect = 0.039
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 14/108 (12%)
Query: 59 PAGSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAGQRPG-----------T 107
P PGG F GPPGS +P P A P S +G Q PG +
Sbjct: 106 PPNDGMPGGPIPPGFFQGPPGS-QPSPHAQPPPHNPSSMMGPHSQPPGGVPGTQPLLPNS 164
Query: 108 MREARQSG--LQAQPLGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDP 153
M RQ G + + PR + + P P+ S PP + P
Sbjct: 165 MDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP 212
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 35.0 bits (79), Expect = 0.039
Identities = 21/78 (26%), Positives = 30/78 (38%)
Query: 78 PGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSGLQAQPLGILRDPRLIMRLNPTP 137
PG+G+ +SK A +RPGT R G +A+ G P + +
Sbjct: 2364 PGAGDESSCGTGGGTHRRSKKAKAPERPGTRVSERLRGARAETQGANHTPVISAHQTRST 2423
Query: 138 RTRDSKSPSPPTAPDPLP 155
T SP+ P P P
Sbjct: 2424 TTPPRCSPARERVPRPAP 2441
Score = 28.1 bits (61), Expect = 4.8
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 20/99 (20%)
Query: 76 GPPGSGEPRPAAANRPVESKSKVGSAGQRPGTMREARQSG----------------LQAQ 119
GP S +P P + + + V ++ P + +R G +
Sbjct: 1029 GPELSAQPTPGPVPQVLPASLMVSASPAGPPLIPASRPPGPVLLPPLQPNSGSLPQVLPS 1088
Query: 120 PLGIL----RDPRLIMRLNPTPRTRDSKSPSPPTAPDPL 154
PLG+L R P + L PTP SP+PP L
Sbjct: 1089 PLGVLSGTSRPPTPTLSLKPTPPAPVRLSPAPPPGSSSL 1127
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 34.7 bits (78), Expect = 0.051
Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 95 KSKVGSAGQRPGTMREARQSGLQAQPLGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPL 154
K K G +R G EA + G P D PTP R P PP P PL
Sbjct: 400 KGKAGRLAKRCGERHEAPEQGKPRLPPQAWHDQGRDAPPGPTPARRGLPRPPPPPPP-PL 458
Query: 155 PLSLQRRVCGR 165
P +R C R
Sbjct: 459 PPPPRREPCHR 469
>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
sapiens]
Length = 537
Score = 34.7 bits (78), Expect = 0.051
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 52 GRAVLPRPAGSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGS--AGQRPGTMR 109
G+A P PA FPG GPPG+ + + P+ +S+ G A + G
Sbjct: 303 GQAPRPGPAERPFPGE-------KGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRS 355
Query: 110 EARQSGLQAQPLGILRDPRLIMRLNPTPRTRDSKSPSP 147
+ G A P G L +PRL +T PSP
Sbjct: 356 PGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSP 393
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 34.7 bits (78), Expect = 0.051
Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 95 KSKVGSAGQRPGTMREARQSGLQAQPLGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPL 154
K K G +R G EA + G P D PTP R P PP P PL
Sbjct: 728 KGKAGRLAKRCGERHEAPEQGKPRLPPQAWHDQGRDAPPGPTPARRGLPRPPPPPPP-PL 786
Query: 155 PLSLQRRVCGR 165
P +R C R
Sbjct: 787 PPPPRREPCHR 797
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 34.7 bits (78), Expect = 0.051
Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 95 KSKVGSAGQRPGTMREARQSGLQAQPLGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPL 154
K K G +R G EA + G P D PTP R P PP P PL
Sbjct: 728 KGKAGRLAKRCGERHEAPEQGKPRLPPQAWHDQGRDAPPGPTPARRGLPRPPPPPPP-PL 786
Query: 155 PLSLQRRVCGR 165
P +R C R
Sbjct: 787 PPPPRREPCHR 797
>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 34.7 bits (78), Expect = 0.051
Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 95 KSKVGSAGQRPGTMREARQSGLQAQPLGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPL 154
K K G +R G EA + G P D PTP R P PP P PL
Sbjct: 728 KGKAGRLAKRCGERHEAPEQGKPRLPPQAWHDQGRDAPPGPTPARRGLPRPPPPPPP-PL 786
Query: 155 PLSLQRRVCGR 165
P +R C R
Sbjct: 787 PPPPRREPCHR 797
>gi|20336477 B-cell CLL/lymphoma 7C [Homo sapiens]
Length = 217
Score = 34.3 bits (77), Expect = 0.067
Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 17/127 (13%)
Query: 42 ALRARSAELIGRAVLPRPAGSL-------------FPGGGSWTQLFAGPPGSGEPRPAAA 88
A R+R E GR PR G L F GS + PG G P+P+
Sbjct: 66 AERSRGRERRGRGASPRGGGPLILLDLNDENSNQSFHSEGSLQKGTEPSPG-GTPQPSRP 124
Query: 89 NRPVESKSKVGSAGQRPGTMREARQSGLQAQPLGILRDPRLIMRLNPTPRTRDSKSPSPP 148
P V Q P +E G+ A G +P ++ + P P ++++P
Sbjct: 125 VSPAGPPEGVPEEAQPPRLGQERDPGGITA---GSTDEPPMLTKEEPVPELLEAEAPEAY 181
Query: 149 TAPDPLP 155
+P+P
Sbjct: 182 PVFEPVP 188
>gi|169208912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 33.9 bits (76), Expect = 0.088
Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 33/133 (24%)
Query: 5 GVPGRPNLSFLSWPLILFLLLNLCHSATKSIQASLISA-----LRARSAELIGRAVLP-- 57
GV +LSFLSW + C +S AS S LR S+EL+ A+ P
Sbjct: 85 GVSLTVSLSFLSWSS------SRCRVPARSSAASACSCRLRIFLRTASSELLP-AIAPDG 137
Query: 58 RPAGSLF---PGGGSWTQL--FAGPPGSGEPRPAAA---NRPVESKSKVGSAGQRPGTMR 109
R AG L P T+L + P +G PRP + RP+ RPG +R
Sbjct: 138 RRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRRRRPL-----------RPGAVR 186
Query: 110 EARQSGLQAQPLG 122
+++ GL+ Q G
Sbjct: 187 KSQPPGLRRQTAG 199
>gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 511
Score = 33.9 bits (76), Expect = 0.088
Identities = 42/142 (29%), Positives = 54/142 (38%), Gaps = 16/142 (11%)
Query: 58 RPAGSLFPGGGSWTQLFAGPPGSGEPRPAAANRPVESKSKVGSAG---QRPGTMREARQS 114
RPA ++ GG ++ PP S E +A RPV + S +RP RE Q
Sbjct: 28 RPARAVRRGGHPAHFCWSRPPVSRERDDPSAPRPVPALPSSPSPPPPVRRPSAARE--QQ 85
Query: 115 GLQAQPLGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLSL--------QRRVCGRE 166
G Q P G LRD RL P R + P D P +L R CG
Sbjct: 86 GRQV-PAGSLRDCRLASL--PLQRPFRGRGPHRSLGCDAAPAALGNGRPGARSDRPCGAG 142
Query: 167 RDAGREKRGEGEHLFISFPPSI 188
D G G+ + PP +
Sbjct: 143 GDGGGRLPGDDDDNDEEQPPPL 164
>gi|169208667 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 33.9 bits (76), Expect = 0.088
Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 33/133 (24%)
Query: 5 GVPGRPNLSFLSWPLILFLLLNLCHSATKSIQASLISA-----LRARSAELIGRAVLP-- 57
GV +LSFLSW + C +S AS S LR S+EL+ A+ P
Sbjct: 85 GVSLTVSLSFLSWSS------SRCRVPARSSAASACSCRLRIFLRTASSELLP-AIAPDG 137
Query: 58 RPAGSLF---PGGGSWTQL--FAGPPGSGEPRPAAA---NRPVESKSKVGSAGQRPGTMR 109
R AG L P T+L + P +G PRP + RP+ RPG +R
Sbjct: 138 RRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRRRRPL-----------RPGAVR 186
Query: 110 EARQSGLQAQPLG 122
+++ GL+ Q G
Sbjct: 187 KSQPPGLRRQTAG 199
>gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 33.9 bits (76), Expect = 0.088
Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 33/133 (24%)
Query: 5 GVPGRPNLSFLSWPLILFLLLNLCHSATKSIQASLISA-----LRARSAELIGRAVLP-- 57
GV +LSFLSW + C +S AS S LR S+EL+ A+ P
Sbjct: 85 GVSLTVSLSFLSWSS------SRCRVPARSSAASACSCRLRIFLRTASSELLP-AIAPDG 137
Query: 58 RPAGSLF---PGGGSWTQL--FAGPPGSGEPRPAAA---NRPVESKSKVGSAGQRPGTMR 109
R AG L P T+L + P +G PRP + RP+ RPG +R
Sbjct: 138 RRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPL-----------RPGAVR 186
Query: 110 EARQSGLQAQPLG 122
+++ GL+ Q G
Sbjct: 187 KSQPPGLRRQTAG 199
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 33.9 bits (76), Expect = 0.088
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 21/108 (19%)
Query: 57 PRPAGSLFPGGGSWTQLFAGPPGSGEP----RPAAANRPVESKSKVGSAGQ--RPGTMRE 110
P P G P G F G PG G+P +P A P S++G AG PG +
Sbjct: 79 PGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPP--GFSRMGKAGPPGLPGKVGP 136
Query: 111 ARQSGLQAQPLGILRDPRLIMRLNPTPRTRDSKSPSPPTAPDPLPLSL 158
Q GL+ +P GI D L P PP P P +++
Sbjct: 137 PGQPGLRGEP-GIRGDQGL------------RGPPGPPGLPGPSGITI 171
Score = 29.3 bits (64), Expect = 2.2
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 56 LPRPAGSLFPGGGSWTQLFAGPPG-SGEPRPAAANRPVESKSKVGSAG-QRPGTMREARQ 113
LP P+G PG Q GPPG GEP P P + G G +PG Q
Sbjct: 163 LPGPSGITIPGKPG-AQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQ 221
Query: 114 SGLQAQP 120
G P
Sbjct: 222 GGAPGPP 228
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 33.9 bits (76), Expect = 0.088
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 37 ASLISALRARSAELIGRAVLPRPAGSLFPGG-GSWTQLFAGPPGSGE------PRPAAAN 89
+S + A + E + R +L RP+ +L G G + Q A P G+ PR A
Sbjct: 235 SSQVWAAGPAAQEWLSRDLLHRPSDALAKKGLGPFLQT-AKPARRGQTSASILPRVVQAQ 293
Query: 90 R-PVESKSKVGSAGQR--PGTMREARQSGLQAQPLGILRDPRLIMRLNPT---PRTRDSK 143
R P + G G P T+ G+QA P PR ++ +P P + D+
Sbjct: 294 RGPQPPPGEAGIPGHPTPPATLPSEPVEGVQASPWR----PRPVLPTHPALTLPVSSDAS 349
Query: 144 SPSPPTAPDPLPLSL 158
SPSPP P SL
Sbjct: 350 SPSPPAPRPERPESL 364
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,222,733
Number of Sequences: 37866
Number of extensions: 623800
Number of successful extensions: 4365
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 319
Number of HSP's that attempted gapping in prelim test: 3977
Number of HSP's gapped (non-prelim): 717
length of query: 191
length of database: 18,247,518
effective HSP length: 96
effective length of query: 95
effective length of database: 14,612,382
effective search space: 1388176290
effective search space used: 1388176290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.