Guide to the Human Genome
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Name: LOC100293310 Sequence: fasta or formatted (191aa) NCBI GI: 239755104
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         16           3
 C cysteine            1.6          3           1
 D aspartate           2.1          4           1
 E glutamate           4.2          8           1
 F phenylalanine       3.1          6           1
 G glycine            10.5         20           3
 H histidine           1.6          3           1
 I isoleucine          4.2          8           1
 K lysine              2.6          5           1
 L leucine            13.1         25           3
 M methionine          1.6          3           1
 N asparagine          2.1          4           1
 P proline            13.1         25           2
 Q glutamine           3.7          7           1
 R arginine           11.0         21           2
 S serine             10.5         20           1
 T threonine           3.1          6           1
 V valine              2.6          5           1
 W tryptophan          1.0          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291401          1.000   PREDICTED: hypothetical protein XP_002347103 
LOC100287676          0.995   PREDICTED: hypothetical protein XP_002342986 
WNK2                  0.038   WNK lysine deficient protein kinase 2 
ANO8                  0.036   anoctamin 8 
LOC645602             0.036   PREDICTED: hypothetical protein 
LOC645602             0.036   PREDICTED: hypothetical protein 
LOC645602             0.036   PREDICTED: hypothetical protein 
LOC652586             0.033   PREDICTED: similar to facioscapulohumeral muscular ...
KAT2A                 0.033   general control of amino acid synthesis 5-like 2 [H...
LOC100132345          0.030   PREDICTED: hypothetical protein 
SORCS2                0.030   VPS10 domain receptor protein SORCS 2 
WWP2                  0.027   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP2                  0.027   WW domain containing E3 ubiquitin protein ligase 2 i...
WIPF3                 0.027   WAS/WASL interacting protein family, member 3 [Homo...
GGN                   0.027   gametogenetin 
SSBP3                 0.027   single stranded DNA binding protein 3 isoform b [Hom...
SRCAP                 0.027   Snf2-related CBP activator protein 
LOC100293662          0.027   PREDICTED: hypothetical protein 
LOC100289969          0.027   PREDICTED: hypothetical protein XP_002347692 
LOC100289444          0.027   PREDICTED: hypothetical protein 
LOC100289444          0.027   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.027   PREDICTED: hypothetical protein 
BCL7C                 0.025   B-cell CLL/lymphoma 7C 
LOC100128979          0.025   PREDICTED: hypothetical protein 
LOC646396             0.025   PREDICTED: similar to hCG2042704 
LOC100128979          0.025   PREDICTED: hypothetical protein 
LOC100128979          0.025   PREDICTED: hypothetical protein 
COL8A2                0.025   collagen, type VIII, alpha 2 
C1orf127              0.025   hypothetical protein LOC148345 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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