Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239755081
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755081 PREDICTED: similar to golgi membrane protein 1
[Homo sapiens]
(129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755081 PREDICTED: similar to golgi membrane protein 1 [Hom... 254 1e-68
gi|29550850 golgi membrane protein 1 [Homo sapiens] 204 2e-53
gi|29550838 golgi membrane protein 1 [Homo sapiens] 204 2e-53
gi|29826291 cancer susceptibility candidate 4 isoform b [Homo sa... 70 5e-13
gi|29826289 cancer susceptibility candidate 4 isoform a [Homo sa... 70 5e-13
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 35 0.021
gi|122937382 Fas (TNFRSF6) binding factor 1 [Homo sapiens] 35 0.021
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 34 0.028
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 34 0.028
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 34 0.028
gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ... 34 0.028
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 34 0.037
gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens] 33 0.048
gi|21735548 centrosomal protein 2 [Homo sapiens] 33 0.081
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 33 0.081
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 33 0.081
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 33 0.081
gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens] 32 0.18
gi|191252785 centrobin, centrosomal BRCA2 interacting protein is... 32 0.18
gi|80861396 centrobin, centrosomal BRCA2 interacting protein iso... 32 0.18
gi|23503243 Ras association (RalGDS/AF-6) domain family (N-termi... 32 0.18
gi|38348729 hypothetical protein LOC203238 [Homo sapiens] 32 0.18
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 31 0.24
gi|38348282 RUN and FYVE domain containing 4 [Homo sapiens] 31 0.24
gi|130980075 centromere protein J [Homo sapiens] 31 0.31
gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens] 30 0.40
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ... 30 0.40
gi|21361478 septin 6 isoform B [Homo sapiens] 30 0.53
gi|22035581 septin 6 isoform D [Homo sapiens] 30 0.53
gi|22035579 septin 6 isoform A [Homo sapiens] 30 0.53
>gi|239755081 PREDICTED: similar to golgi membrane protein 1 [Homo
sapiens]
Length = 129
Score = 254 bits (650), Expect = 1e-68
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER 60
MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER
Sbjct: 1 MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER 60
Query: 61 GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKARPALFPLSSFLRDGVY 120
GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKARPALFPLSSFLRDGVY
Sbjct: 61 GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKARPALFPLSSFLRDGVY 120
Query: 121 IVCFFLAGG 129
IVCFFLAGG
Sbjct: 121 IVCFFLAGG 129
>gi|29550850 golgi membrane protein 1 [Homo sapiens]
Length = 401
Score = 204 bits (518), Expect = 2e-53
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER 60
MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER
Sbjct: 1 MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER 60
Query: 61 GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKA 104
GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKA
Sbjct: 61 GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKA 104
>gi|29550838 golgi membrane protein 1 [Homo sapiens]
Length = 401
Score = 204 bits (518), Expect = 2e-53
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER 60
MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER
Sbjct: 1 MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER 60
Query: 61 GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKA 104
GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKA
Sbjct: 61 GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKA 104
>gi|29826291 cancer susceptibility candidate 4 isoform b [Homo
sapiens]
Length = 380
Score = 70.1 bits (170), Expect = 5e-13
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 1 MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER 60
M+G G RR+ + P LVL L+ I+VL FNYW SSR V LQ + EL+G+V+R R
Sbjct: 1 MVGFGANRRAGRLPSLVLVVLLVVIVVLAFNYWSISSRHVLLQEEVAELQGQVQRTEVAR 60
Query: 61 GAVELKKNEFQGELEKQREQLDKIQ------SSHNFQLESVNKLYQDEKAR 105
G +E + ++ ++ ++Q+D+ + SS E + K +D+K +
Sbjct: 61 GRLEKRNSDLLLLVDTHKKQIDQKEADYGRLSSRLQAREGLGKRCEDDKVK 111
>gi|29826289 cancer susceptibility candidate 4 isoform a [Homo
sapiens]
Length = 436
Score = 70.1 bits (170), Expect = 5e-13
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 1 MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER 60
M+G G RR+ + P LVL L+ I+VL FNYW SSR V LQ + EL+G+V+R R
Sbjct: 1 MVGFGANRRAGRLPSLVLVVLLVVIVVLAFNYWSISSRHVLLQEEVAELQGQVQRTEVAR 60
Query: 61 GAVELKKNEFQGELEKQREQLDKIQ------SSHNFQLESVNKLYQDEKAR 105
G +E + ++ ++ ++Q+D+ + SS E + K +D+K +
Sbjct: 61 GRLEKRNSDLLLLVDTHKKQIDQKEADYGRLSSRLQAREGLGKRCEDDKVK 111
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 34.7 bits (78), Expect = 0.021
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 40 VDLQTRIMELEGRVRRAAAERGAVELKKNEFQGEL----------EKQREQLDKIQSSHN 89
V L+ ++ +LEG + + R +E K + +G+L E ++QLD+ +
Sbjct: 1025 VKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESIMDLENDKQQLDERLKKKD 1084
Query: 90 FQLESVNKLYQDEKA 104
F+L ++N +DE+A
Sbjct: 1085 FELNALNARIEDEQA 1099
Score = 32.3 bits (72), Expect = 0.11
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNK 97
+LQ RI ELE + R VE +++ ELE+ E+L++ + + Q+E K
Sbjct: 1110 ELQARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKK 1166
>gi|122937382 Fas (TNFRSF6) binding factor 1 [Homo sapiens]
Length = 1133
Score = 34.7 bits (78), Expect = 0.021
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 43 QTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQRE-QLDKIQSSHNFQLESVNKLYQD 101
Q R+ ELE +VR+ ER EL G L++Q + L+ I+S+H +++ + YQ
Sbjct: 586 QARLAELEAQVRKLELERAQHEL----LLGSLQQQHQADLELIESAHRSRIKVLETSYQQ 641
Query: 102 EKAR 105
+ R
Sbjct: 642 REER 645
>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
sapiens]
Length = 1939
Score = 34.3 bits (77), Expect = 0.028
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNK 97
+LQ RI ELE + A R E ++++ ELE+ E+L++ + + Q+E K
Sbjct: 1114 ELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKK 1170
Score = 30.4 bits (67), Expect = 0.40
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 40 VDLQTRIMELEGRVRRAAAERGAVELKKNEFQGEL----------EKQREQLDKIQSSHN 89
+ L+ ++ +LEG + + R +E K + +G+L E ++QLD+
Sbjct: 1029 IKLEQQVDDLEGSLEQEKKIRMDLERAKRKLEGDLKLAQESTMDIENDKQQLDEKLKKKE 1088
Query: 90 FQLESVNKLYQDEKA 104
F++ + +DE+A
Sbjct: 1089 FEMSGLQSKIEDEQA 1103
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 34.3 bits (77), Expect = 0.028
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNK 97
+LQ RI ELE + A R E ++++ ELE+ E+L++ + + Q+E K
Sbjct: 1116 ELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKK 1172
Score = 31.6 bits (70), Expect = 0.18
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 40 VDLQTRIMELEGRVRRAAAERGAVELKKNEFQGEL----------EKQREQLDKIQSSHN 89
+ L+ ++ +LEG + + R +E K + +G+L E +++QLD+
Sbjct: 1031 IKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESIMDIENEKQQLDEKLKKKE 1090
Query: 90 FQLESVNKLYQDEKA 104
F++ ++ +DE+A
Sbjct: 1091 FEISNLQSKIEDEQA 1105
Score = 28.1 bits (61), Expect = 2.0
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQR---EQLDKIQSSHNFQLESVNK 97
+L+++ E + + A+RG ++ + EF +L+++ QL + + + Q+E + +
Sbjct: 1264 ELKSKEEEQQRLINDLTAQRGRLQTESGEFSRQLDEKEALVSQLSRGKQAFTQQIEELKR 1323
Query: 98 LYQDE-KARPAL 108
++E KA+ AL
Sbjct: 1324 QLEEEIKAKNAL 1335
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 34.3 bits (77), Expect = 0.028
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNK 97
+LQ RI ELE + A R E ++++ ELE+ E+L++ + + Q+E K
Sbjct: 1116 ELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKK 1172
Score = 31.6 bits (70), Expect = 0.18
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 40 VDLQTRIMELEGRVRRAAAERGAVELKKNEFQGEL----------EKQREQLDKIQSSHN 89
+ L+ ++ +LEG + + R +E K + +G+L E +++QLD+
Sbjct: 1031 IKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESIMDIENEKQQLDEKLKKKE 1090
Query: 90 FQLESVNKLYQDEKA 104
F++ ++ +DE+A
Sbjct: 1091 FEISNLQSKIEDEQA 1105
Score = 28.1 bits (61), Expect = 2.0
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQR---EQLDKIQSSHNFQLESVNK 97
+L+++ E + + A+RG ++ + EF +L+++ QL + + + Q+E + +
Sbjct: 1264 ELKSKEEEQQRLINDLTAQRGRLQTESGEFSRQLDEKEALVSQLSRGKQAFTQQIEELKR 1323
Query: 98 LYQDE-KARPAL 108
++E KA+ AL
Sbjct: 1324 QLEEEIKAKNAL 1335
>gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo
sapiens]
Length = 1939
Score = 34.3 bits (77), Expect = 0.028
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNK 97
+LQ RI ELE + A R E ++++ ELE+ E+L++ + + Q+E K
Sbjct: 1114 ELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKK 1170
Score = 27.3 bits (59), Expect = 3.4
Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQ----REQLDKIQSSHNFQLESVN 96
+LQT + E E + + ++L+ N+ + E++++ E+LD+++ +H +ES+
Sbjct: 1543 ELQTSLEEAEASLEHEEGKILRIQLELNQVKSEIDRKIAEKDEELDQLKRNHLRVVESMQ 1602
Query: 97 KLYQDE 102
E
Sbjct: 1603 STLDAE 1608
>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
sapiens]
Length = 1940
Score = 33.9 bits (76), Expect = 0.037
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQ 100
+LQ RI ELE + A R E +++++ ELE+ E+L++ + Q+E +NK +
Sbjct: 1111 ELQARIEELEEEIEAERATRAKTEKQRSDYARELEELSERLEEAGGVTSTQIE-LNKKRE 1169
Query: 101 DE 102
E
Sbjct: 1170 AE 1171
>gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens]
Length = 625
Score = 33.5 bits (75), Expect = 0.048
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 42 LQTRIMELEGRVRRAAAERGAVELKKNEFQG---ELEKQREQLDKIQSSHNFQLESVNKL 98
LQ + EL+ +V +G E + E +G EL+ R+QL++ Q + L++++ L
Sbjct: 451 LQQTVEELQAQVHSMDGAKGWFERRLKEAEGKEEELQDVRDQLEQAQEERDCHLKTISSL 510
Query: 99 YQDEK 103
Q+ K
Sbjct: 511 KQEVK 515
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 32.7 bits (73), Expect = 0.081
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 6 NGRRSM-KSPPLVLA----ALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER 60
NG RS+ K PL+ A A+ + + L + W L+ ++ +LE R+ AE+
Sbjct: 1221 NGARSLFKRGPLLTALSAEAVASALHKLHQDLWKTQQTRDVLRDQVQKLEERLTDTEAEK 1280
Query: 61 GAVELKKNEFQGELEKQREQLDKIQSSHNFQLES 94
V + + Q +L + +E+ K + N LES
Sbjct: 1281 SQVHTELQDLQRQLSQNQEEKSKWEGKQN-SLES 1313
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 32.7 bits (73), Expect = 0.081
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 34 IASSRSVDLQTRIMELEGRV---RRAAAERGAVELKKNEFQGE---LEKQREQLDKIQSS 87
+ +S+S ++ +I EL+ + R+ E+G +E + E Q + LEKQ ++ +
Sbjct: 709 LVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQE 768
Query: 88 HNFQLESVNKLYQDEK 103
QLE+ N + +DEK
Sbjct: 769 KFAQLEAENSILKDEK 784
Score = 26.2 bits (56), Expect = 7.6
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 20/71 (28%)
Query: 58 AERGAVELKKNE----------FQGELEKQREQLDKIQSSHNFQ----------LESVNK 97
AER A++ K+ E F+ ELE + E++ ++ Q LE NK
Sbjct: 2193 AERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENK 2252
Query: 98 LYQDEKARPAL 108
L++D+ + L
Sbjct: 2253 LFKDDMEKLGL 2263
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 32.7 bits (73), Expect = 0.081
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 34 IASSRSVDLQTRIMELEGRV---RRAAAERGAVELKKNEFQGE---LEKQREQLDKIQSS 87
+ +S+S ++ +I EL+ + R+ E+G +E + E Q + LEKQ ++ +
Sbjct: 709 LVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQE 768
Query: 88 HNFQLESVNKLYQDEK 103
QLE+ N + +DEK
Sbjct: 769 KFAQLEAENSILKDEK 784
Score = 26.2 bits (56), Expect = 7.6
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 20/71 (28%)
Query: 58 AERGAVELKKNE----------FQGELEKQREQLDKIQSSHNFQ----------LESVNK 97
AER A++ K+ E F+ ELE + E++ ++ Q LE NK
Sbjct: 2185 AERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENK 2244
Query: 98 LYQDEKARPAL 108
L++D+ + L
Sbjct: 2245 LFKDDMEKLGL 2255
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 32.7 bits (73), Expect = 0.081
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNK 97
+LQ RI ELE + R +E ++++ ELE+ E+L++ + + Q+E K
Sbjct: 1114 ELQARIEELEEEIEAEHTLRAKIEKQRSDLARELEEISERLEEASGATSAQIEMNKK 1170
Score = 25.8 bits (55), Expect = 9.9
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 42 LQTRIMELEGRVRRAAAERGAVELKKNEFQG----------ELEKQREQLDKIQSSHNFQ 91
L+ + +LEG + + R +E K + +G +LE ++Q+++ F+
Sbjct: 1031 LEQQTDDLEGSLEQEKKLRADLERAKRKLEGDLKMSQESIMDLENDKQQIEEKLKKKEFE 1090
Query: 92 LESVNKLYQDEKARPALF 109
L + DE+ F
Sbjct: 1091 LSQLQAKIDDEQVHSLQF 1108
>gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]
Length = 1035
Score = 31.6 bits (70), Expect = 0.18
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 48 ELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKI-QSSHNFQLESVNKLYQDEKARP 106
E+E R +R ER E K+ + Q E +K+R++ +++ + H Q E + KL Q ++A P
Sbjct: 690 EVELRAKREEEERKRREEKRRQQQQEEQKRRQEEEELFRRKHVRQQELLLKLLQQQQAVP 749
>gi|191252785 centrobin, centrosomal BRCA2 interacting protein
isoform alpha [Homo sapiens]
Length = 903
Score = 31.6 bits (70), Expect = 0.18
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 33 WIASSRSVDLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLD 82
W + +Q+ + LEG + A ER A++L+ + Q E QR QL+
Sbjct: 399 WETQHQLALVQSEVRRLEGELDTARRERDALQLEMSLVQARYESQRIQLE 448
>gi|80861396 centrobin, centrosomal BRCA2 interacting protein
isoform beta [Homo sapiens]
Length = 925
Score = 31.6 bits (70), Expect = 0.18
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 33 WIASSRSVDLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLD 82
W + +Q+ + LEG + A ER A++L+ + Q E QR QL+
Sbjct: 399 WETQHQLALVQSEVRRLEGELDTARRERDALQLEMSLVQARYESQRIQLE 448
>gi|23503243 Ras association (RalGDS/AF-6) domain family
(N-terminal) member 8 [Homo sapiens]
Length = 392
Score = 31.6 bits (70), Expect = 0.18
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKL 98
+L+ I+ LE +++R E E +NE Q E E +++ D++Q E NKL
Sbjct: 201 NLEEEIVRLEQKIKRNDVEIEEEEFWENELQIEQENEKQLKDQLQEIRQKITECENKL 258
>gi|38348729 hypothetical protein LOC203238 [Homo sapiens]
Length = 1326
Score = 31.6 bits (70), Expect = 0.18
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 39 SVDLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQLESV--N 96
+ LQ +I+ R+ A ER ++ L+ EF+ + + +++LDK Q QL +
Sbjct: 969 TASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGL-QMQLNEFKQS 1027
Query: 97 KLYQDEKARPALFPLSSFL 115
KL EK A L++ L
Sbjct: 1028 KLITHEKFESACEELNNAL 1046
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
sapiens]
Length = 1937
Score = 31.2 bits (69), Expect = 0.24
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQ 100
+LQ RI EL + A R E ++++ ELE+ E+L++ + + Q+E +NK +
Sbjct: 1113 ELQARIEELGEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQVE-LNKKRE 1171
Query: 101 DE 102
E
Sbjct: 1172 AE 1173
Score = 29.6 bits (65), Expect = 0.69
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 34 IASSRSVDLQTRIMELEGRVRRAAAERGAVELKKNEFQGEL----------EKQREQLDK 83
I + L+ ++ +LEG + + R +E K + +G+L E ++QLD+
Sbjct: 1022 ILTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMDMENDKQQLDE 1081
Query: 84 IQSSHNFQLESVNKLYQDEKA 104
F++ ++ +DE+A
Sbjct: 1082 KLEKKEFEISNLISKIEDEQA 1102
>gi|38348282 RUN and FYVE domain containing 4 [Homo sapiens]
Length = 398
Score = 31.2 bits (69), Expect = 0.24
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 40 VDLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLY 99
V LQ I L +R+A + E E +GEL+ REQL + Q + +
Sbjct: 236 VSLQDEIKSLRLGLRKAEEQAQRQEQLLREQEGELQALREQLSRCQEERAELQAQLEQKQ 295
Query: 100 QDEKARPALF 109
Q+ + R A++
Sbjct: 296 QEAERRDAMY 305
>gi|130980075 centromere protein J [Homo sapiens]
Length = 1338
Score = 30.8 bits (68), Expect = 0.31
Identities = 16/67 (23%), Positives = 36/67 (53%)
Query: 36 SSRSVDLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQLESV 95
++RS L+ +I+ELE + + AE ++ + E + LEK R+++ + +L +
Sbjct: 900 NARSQVLREKIIELETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARI 959
Query: 96 NKLYQDE 102
+ ++E
Sbjct: 960 EEFKKEE 966
>gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]
Length = 2115
Score = 30.4 bits (67), Expect = 0.40
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHN 89
DL+T +++ ++ + + E G + K EF L++ ++ L+++ H+
Sbjct: 301 DLKTEKSQMDRKINQLSEENGDLSFKLREFASHLQQLQDALNELTEEHS 349
Score = 27.7 bits (60), Expect = 2.6
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 48 ELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDK----IQSSHNFQLESVNKLYQDEK 103
+L+ RV ERG E K +G E++++QL +QSS + ++ +L Q +
Sbjct: 431 QLQARVEMLETERGQQEAKLLAERGHFEEEKQQLSSLITDLQSSISNLSQAKEELEQASQ 490
Query: 104 ARPA 107
A A
Sbjct: 491 AHGA 494
Score = 26.9 bits (58), Expect = 4.5
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 36 SSRSVDLQTRIMELEGRVR----RAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQ 91
S +S L+ R+ L+ RAA A+ + + E EKQR + ++ Q
Sbjct: 1259 SEKSQKLEERLRLLQAETASNSARAAERSSALREEVQSLREEAEKQRVASENLRQELTSQ 1318
Query: 92 LESVNKLYQDEKA 104
E +L Q+ KA
Sbjct: 1319 AERAEELGQELKA 1331
>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
sapiens]
Length = 1983
Score = 30.4 bits (67), Expect = 0.40
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 41 DLQTRIMELEGRVRRAAAERGAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNK 97
+LQ R ELE + A R VE ++ E ELE+ E+L++ + Q E K
Sbjct: 1159 ELQARAEELEEELEAERAARARVEKQRAEAARELEELSERLEEAGGASAGQREGCRK 1215
>gi|21361478 septin 6 isoform B [Homo sapiens]
Length = 434
Score = 30.0 bits (66), Expect = 0.53
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 15/57 (26%)
Query: 64 ELKKNEFQGELEKQRE---------------QLDKIQSSHNFQLESVNKLYQDEKAR 105
E K+NEF GEL+K+ E +L + + + + + + KL+QDEK +
Sbjct: 325 EAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKK 381
>gi|22035581 septin 6 isoform D [Homo sapiens]
Length = 429
Score = 30.0 bits (66), Expect = 0.53
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 15/57 (26%)
Query: 64 ELKKNEFQGELEKQRE---------------QLDKIQSSHNFQLESVNKLYQDEKAR 105
E K+NEF GEL+K+ E +L + + + + + + KL+QDEK +
Sbjct: 325 EAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKK 381
>gi|22035579 septin 6 isoform A [Homo sapiens]
Length = 427
Score = 30.0 bits (66), Expect = 0.53
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 15/57 (26%)
Query: 64 ELKKNEFQGELEKQRE---------------QLDKIQSSHNFQLESVNKLYQDEKAR 105
E K+NEF GEL+K+ E +L + + + + + + KL+QDEK +
Sbjct: 325 EAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKK 381
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,285,701
Number of Sequences: 37866
Number of extensions: 148716
Number of successful extensions: 1450
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 386
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.