Guide to the Human Genome
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Name: LOC100293491 Sequence: fasta or formatted (129aa) NCBI GI: 239755081
Description:

PREDICTED: similar to golgi membrane protein 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         11           3
 C cysteine            1.6          2           1
 D aspartate           3.1          4           1
 E glutamate           7.8         10           1
 F phenylalanine       5.4          7           2
 G glycine             7.8         10           2
 H histidine           0.8          1           1
 I isoleucine          4.7          6           2
 K lysine              5.4          7           2
 L leucine            12.4         16           1
 M methionine          3.1          4           2
 N asparagine          3.9          5           1
 P proline             3.1          4           2
 Q glutamine           5.4          7           1
 R arginine            8.5         11           2
 S serine              7.8         10           2
 T threonine           0.8          1           1
 V valine              7.0          9           1
 W tryptophan          0.8          1           1
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to golgi membrane protein 1 [Hom... 
GOLM1                 0.782   golgi membrane protein 1 
GOLM1                 0.782   golgi membrane protein 1 
CASC4                 0.197   cancer susceptibility candidate 4 isoform b 
CASC4                 0.197   cancer susceptibility candidate 4 isoform a 
MYH7                  0.044   myosin, heavy chain 7, cardiac muscle, beta 
FBF1                  0.044   Fas (TNFRSF6) binding factor 1 
MYH1                  0.039   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH2                  0.039   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.039   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH4                  0.039   myosin, heavy polypeptide 4, skeletal muscle 
MYH3                  0.039   myosin, heavy chain 3, skeletal muscle, embryonic [H...
GRIPAP1               0.035   GRIP1 associated protein 1 isoform 2 
CEP250                0.035   centrosomal protein 2 
AKAP9                 0.035   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.035   A-kinase anchor protein 9 isoform 3 
MYH13                 0.035   myosin, heavy polypeptide 13, skeletal muscle [Homo...
GIGYF1                0.031   PERQ amino acid rich, with GYF domain 1 
CNTROB                0.031   centrobin, centrosomal BRCA2 interacting protein is...
CNTROB                0.031   centrobin, centrosomal BRCA2 interacting protein iso...
RASSF8                0.031   Ras association (RalGDS/AF-6) domain family (N-termi...
C9orf93               0.031   hypothetical protein LOC203238 
MYH8                  0.026   myosin, heavy chain 8, skeletal muscle, perinatal [...
RUFY4                 0.026   RUN and FYVE domain containing 4 
CENPJ                 0.026   centromere protein J 
NUMA1                 0.022   nuclear mitotic apparatus protein 1 
MYH7B                 0.022   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
SEPT6                 0.022   septin 6 isoform B 
SEPT6                 0.022   septin 6 isoform D 
SEPT6                 0.022   septin 6 isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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