Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100128031 Sequence: fasta or formatted (164aa) NCBI GI: 239754616
Description:

PREDICTED: hypothetical protein isoform 2

Not currently referenced in the text

Other entries for this name:
alt mRNA {164aa} PREDICTED: hypothetical protein isoform 2
alt prot {109aa} PREDICTED: hypothetical protein isoform 1
alt mRNA {164aa} PREDICTED: hypothetical protein isoform 2
alt prot {109aa} PREDICTED: hypothetical protein isoform 1
alt mRNA {164aa} PREDICTED: hypothetical protein isoform 2
alt prot {109aa} PREDICTED: hypothetical protein isoform 1
alt prot {109aa} PREDICTED: hypothetical protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         18           2
 C cysteine            3.7          6           1
 D aspartate           1.2          2           1
 E glutamate           3.0          5           1
 F phenylalanine       0.6          1           1
 G glycine             3.0          5           1
 H histidine           3.0          5           1
 I isoleucine          4.9          8           1
 K lysine              1.2          2           1
 L leucine             7.9         13           2
 M methionine          8.5         14           2
 N asparagine          1.2          2           1
 P proline             7.9         13           2
 Q glutamine           4.3          7           1
 R arginine            8.5         14           1
 S serine              9.8         16           3
 T threonine          12.2         20           2
 V valine              4.9          8           1
 W tryptophan          2.4          4           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 2 
LOC100128031          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100128031          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100128031          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100128031          0.658   PREDICTED: hypothetical protein isoform 1 
LOC100128031          0.658   PREDICTED: hypothetical protein isoform 1 
LOC100128031          0.658   PREDICTED: hypothetical protein isoform 1 
LOC100128031          0.658   PREDICTED: hypothetical protein isoform 1 
GSN                   0.016   gelsolin isoform a precursor 
MUC5AC                0.016   mucin 5AC 
MUC5B                 0.016   mucin 5, subtype B, tracheobronchial 
CD164                 0.016   CD164 molecule, sialomucin isoform 3 
CD164                 0.013   CD164 molecule, sialomucin isoform 5 
CD164                 0.013   CD164 molecule, sialomucin isoform 4 
CD164                 0.013   CD164 molecule, sialomucin isoform 2 
CD164                 0.013   CD164 molecule, sialomucin isoform 1 
ZBTB4                 0.013   zinc finger and BTB domain containing 4 
ZBTB4                 0.013   zinc finger and BTB domain containing 4 
PER3                  0.010   period 3 
KRTAP10-6             0.010   keratin associated protein 10-6 
COL27A1               0.010   collagen, type XXVII, alpha 1 
POU2F1                0.010   POU class 2 homeobox 1 
KRTAP10-10            0.010   keratin associated protein 10-10 
IRS2                  0.006   insulin receptor substrate 2 
LPPR4                 0.006   plasticity related gene 1 
ABLIM1                0.006   actin-binding LIM protein 1 isoform s 
GTSE1                 0.006   G-2 and S-phase expressed 1 
MUC17                 0.006   mucin 17 
BAT2D1                0.006   HBxAg transactivated protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press