Guide to the Human Genome
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Name: LOC100128031 Sequence: fasta or formatted (109aa) NCBI GI: 239508915
Description:

PREDICTED: hypothetical protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {164aa} PREDICTED: hypothetical protein isoform 2
alt prot {164aa} PREDICTED: hypothetical protein isoform 2
alt mRNA {109aa} PREDICTED: hypothetical protein isoform 1
alt prot {164aa} PREDICTED: hypothetical protein isoform 2
alt mRNA {109aa} PREDICTED: hypothetical protein isoform 1
alt prot {164aa} PREDICTED: hypothetical protein isoform 2
alt mRNA {109aa} PREDICTED: hypothetical protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         11           2
 C cysteine            5.5          6           1
 D aspartate           0.0          0           0
 E glutamate           4.6          5           1
 F phenylalanine       0.9          1           1
 G glycine             3.7          4           1
 H histidine           3.7          4           1
 I isoleucine          4.6          5           1
 K lysine              1.8          2           1
 L leucine             6.4          7           2
 M methionine         10.1         11           2
 N asparagine          0.0          0           0
 P proline             7.3          8           1
 Q glutamine           4.6          5           1
 R arginine            9.2         10           1
 S serine             10.1         11           2
 T threonine           9.2         10           2
 V valine              4.6          5           1
 W tryptophan          2.8          3           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 1 
LOC100128031          1.000   PREDICTED: hypothetical protein isoform 1 
LOC100128031          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100128031          1.000   PREDICTED: hypothetical protein isoform 1 
LOC100128031          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100128031          1.000   PREDICTED: hypothetical protein isoform 1 
LOC100128031          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100128031          1.000   PREDICTED: hypothetical protein isoform 2 
GSN                   0.025   gelsolin isoform a precursor 
PER3                  0.015   period 3 
KRTAP10-6             0.015   keratin associated protein 10-6 
COL27A1               0.015   collagen, type XXVII, alpha 1 
POU2F1                0.015   POU class 2 homeobox 1 
ZNF671                0.010   zinc finger protein 671 
KRTAP10-10            0.010   keratin associated protein 10-10 
C19orf60              0.005   hypothetical protein LOC55049 isoform 1 
OMD                   0.005   osteomodulin 
C19orf60              0.005   hypothetical protein LOC55049 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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