Search of human proteins with 119369512

Search of human proteins with 119369512

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|119369512 transmembrane protein 183B [Homo sapiens]
         (376 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|119369512 transmembrane protein 183B [Homo sapiens]                778   0.0  
gi|115529437 transmembrane protein 183A [Homo sapiens]                763   0.0  
gi|55741661 hypothetical protein LOC57653 [Homo sapiens]               35   0.14 
gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo...    34   0.19 
gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo...    34   0.19 
gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens]             32   0.71 
gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens]             32   0.71 
gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens]             32   0.71 
gi|63252886 prolyl 4-hydroxylase, alpha I subunit isoform 1 prec...    32   0.93 
gi|42560244 peptidylprolyl isomerase G [Homo sapiens]                  32   0.93 
gi|105990539 neurofilament, light polypeptide 68kDa [Homo sapiens]     32   1.2  
gi|16306595 S-phase kinase-associated protein 2 isoform 1 [Homo ...    31   1.6  
gi|14249170 S-phase kinase-associated protein 2 isoform 2 [Homo ...    31   1.6  
gi|16306574 F-box and leucine-rich repeat protein 5 isoform 2 [H...    31   1.6  
gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [H...    31   1.6  
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi...    31   1.6  
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi...    31   1.6  
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]      30   2.7  
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi...    30   2.7  
gi|109134347 NY-REN-58 antigen [Homo sapiens]                          30   2.7  
gi|109134355 NY-REN-58 antigen [Homo sapiens]                          30   2.7  
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo...    30   3.5  
gi|54112382 F-box and leucine-rich repeat protein 10 isoform a [...    30   4.6  
gi|54112380 F-box and leucine-rich repeat protein 10 isoform b [...    30   4.6  
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap...    29   7.9  
gi|4557563 excision repair cross-complementing rodent repair def...    29   7.9  
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C...    29   7.9  
gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo sa...    29   7.9  
gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo sa...    29   7.9  
gi|4885307 G protein-coupled receptor 21 [Homo sapiens]                29   7.9  

>gi|119369512 transmembrane protein 183B [Homo sapiens]
          Length = 376

 Score =  778 bits (2008), Expect = 0.0
 Identities = 376/376 (100%), Positives = 376/376 (100%)

Query: 1   MARGPGPLGRPRPDTVAMPKRGKRLKFRAHDACSGRVTVADYADSDLAVVRSGRVKKAVA 60
           MARGPGPLGRPRPDTVAMPKRGKRLKFRAHDACSGRVTVADYADSDLAVVRSGRVKKAVA
Sbjct: 1   MARGPGPLGRPRPDTVAMPKRGKRLKFRAHDACSGRVTVADYADSDLAVVRSGRVKKAVA 60

Query: 61  NAVRQEVKSLCGLEASQVPAEEALSGAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSKR 120
           NAVRQEVKSLCGLEASQVPAEEALSGAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSKR
Sbjct: 61  NAVRQEVKSLCGLEASQVPAEEALSGAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSKR 120

Query: 121 HKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTL 180
           HKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTL
Sbjct: 121 HKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTL 180

Query: 181 DASLPLRLRPESMEKLHCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLF 240
           DASLPLRLRPESMEKLHCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLF
Sbjct: 181 DASLPLRLRPESMEKLHCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLF 240

Query: 241 WCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCTGGLQPPVQYEDVHTNPDQDCCLLQVTTL 300
           WCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCTGGLQPPVQYEDVHTNPDQDCCLLQVTTL
Sbjct: 241 WCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCTGGLQPPVQYEDVHTNPDQDCCLLQVTTL 300

Query: 301 NFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVHGGRKLRSEQGVQVILDPVHSV 360
           NFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVHGGRKLRSEQGVQVILDPVHSV
Sbjct: 301 NFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVHGGRKLRSEQGVQVILDPVHSV 360

Query: 361 RLFDWWHPQYPFSLRA 376
           RLFDWWHPQYPFSLRA
Sbjct: 361 RLFDWWHPQYPFSLRA 376


>gi|115529437 transmembrane protein 183A [Homo sapiens]
          Length = 376

 Score =  763 bits (1970), Expect = 0.0
 Identities = 370/376 (98%), Positives = 373/376 (99%)

Query: 1   MARGPGPLGRPRPDTVAMPKRGKRLKFRAHDACSGRVTVADYADSDLAVVRSGRVKKAVA 60
           MARGPGPLGRPRPDTVAMPKRGKRLKFRAHDACSGRVTVADYA+SD AVVRSGRVKKAVA
Sbjct: 1   MARGPGPLGRPRPDTVAMPKRGKRLKFRAHDACSGRVTVADYANSDPAVVRSGRVKKAVA 60

Query: 61  NAVRQEVKSLCGLEASQVPAEEALSGAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSKR 120
           NAV+QEVKSLCGLEASQVPAEEALSGAGEP DIIDSSDEMDAQEE+IHERTVSRKKKSKR
Sbjct: 61  NAVQQEVKSLCGLEASQVPAEEALSGAGEPCDIIDSSDEMDAQEESIHERTVSRKKKSKR 120

Query: 121 HKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTL 180
           HKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTL
Sbjct: 121 HKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTL 180

Query: 181 DASLPLRLRPESMEKLHCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLF 240
           DASLPLRLRPESMEKL CLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLF
Sbjct: 181 DASLPLRLRPESMEKLRCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLF 240

Query: 241 WCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCTGGLQPPVQYEDVHTNPDQDCCLLQVTTL 300
           WCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCTGGLQPPVQYEDVHTNPDQDCCLLQVTTL
Sbjct: 241 WCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCTGGLQPPVQYEDVHTNPDQDCCLLQVTTL 300

Query: 301 NFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVHGGRKLRSEQGVQVILDPVHSV 360
           NFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVHGGRKLRSEQGVQVILDPVHSV
Sbjct: 301 NFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVHGGRKLRSEQGVQVILDPVHSV 360

Query: 361 RLFDWWHPQYPFSLRA 376
           RLFDWWHPQYPFSLRA
Sbjct: 361 RLFDWWHPQYPFSLRA 376


>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
          Length = 1646

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 18/123 (14%)

Query: 53  GRVKKAVANAVRQEVK--SLCGLEASQVPAEEALS---------GAGEPYDIIDSSDEMD 101
           G+ KK+  +A   E K  S+ GLE  QV  E +L+         G GE  +  +  DE +
Sbjct: 854 GQQKKSPLHAKMDESKEGSIQGLEEMQVEREGSLNPSLNEENVKGQGEKKEESEEEDEKE 913

Query: 102 AQEENIHERTVSRKKKSKRHKEELDGAG-GEEYPMDIWLLLASYIRPEDIVNFSLICKNA 160
            +EE   E  +  +K+ K  +EE +    GEE   +  L    Y   ED+ +F++   N 
Sbjct: 914 EEEE---EEKLEEEKEEKEAQEEQESLSVGEEEDKEEGLEEIYY---EDMESFTISSGNT 967

Query: 161 WTV 163
           + V
Sbjct: 968 YFV 970


>gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo
            sapiens]
          Length = 1236

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 55   VKKAVANAVRQEVKSLCGLEASQVPAEEA--LSGAGEPYDII--DSSDEMDAQEENIHER 110
            ++KA A A R    S   +E  +   EE     G G+  + I  DS DE D +EE     
Sbjct: 974  IRKAEARAKRHRALSQAAVEEEEEEEEEEEPAQGKGDSIEEILADSEDEEDNEEEERSRG 1033

Query: 111  TVSRKKKSKRHKEELDGAGGEE 132
               RK   +R +  L   GG+E
Sbjct: 1034 KEQRKLARQRSRAWLKEGGGDE 1055


>gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo
            sapiens]
          Length = 1297

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 55   VKKAVANAVRQEVKSLCGLEASQVPAEEA--LSGAGEPYDII--DSSDEMDAQEENIHER 110
            ++KA A A R    S   +E  +   EE     G G+  + I  DS DE D +EE     
Sbjct: 1035 IRKAEARAKRHRALSQAAVEEEEEEEEEEEPAQGKGDSIEEILADSEDEEDNEEEERSRG 1094

Query: 111  TVSRKKKSKRHKEELDGAGGEE 132
               RK   +R +  L   GG+E
Sbjct: 1095 KEQRKLARQRSRAWLKEGGGDE 1116


>gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens]
          Length = 843

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 18/134 (13%)

Query: 105 ENIHERTVSRKKKSKRHKEELDGAGGEEY-----PMDIWLLLASYIRPEDIVNFSLICKN 159
           EN   R    +   K   ++L  A  E+Y     P ++ L + SY+  +D+   + +CK 
Sbjct: 44  ENFGHRAKRARVSGK--SQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKR 101

Query: 160 AWTVTCTAAFWTRLYRR--HYTLDASLP-----LRLRPESMEKLHCLRACVIRSLY---H 209
              +      W RLY     YT     P      ++ PE  E  +  +    + LY   H
Sbjct: 102 FSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKES-FQQLYKGAH 160

Query: 210 MYEPFAARISKNPA 223
           +   FA     NPA
Sbjct: 161 VKPGFAEHFYSNPA 174


>gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens]
          Length = 686

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 18/134 (13%)

Query: 105 ENIHERTVSRKKKSKRHKEELDGAGGEEY-----PMDIWLLLASYIRPEDIVNFSLICKN 159
           EN   R    +   K   ++L  A  E+Y     P ++ L + SY+  +D+   + +CK 
Sbjct: 44  ENFGHRAKRARVSGK--SQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKR 101

Query: 160 AWTVTCTAAFWTRLYRR--HYTLDASLP-----LRLRPESMEKLHCLRACVIRSLY---H 209
              +      W RLY     YT     P      ++ PE  E  +  +    + LY   H
Sbjct: 102 FSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKES-FQQLYKGAH 160

Query: 210 MYEPFAARISKNPA 223
           +   FA     NPA
Sbjct: 161 VKPGFAEHFYSNPA 174


>gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens]
          Length = 585

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 18/134 (13%)

Query: 105 ENIHERTVSRKKKSKRHKEELDGAGGEEY-----PMDIWLLLASYIRPEDIVNFSLICKN 159
           EN   R    +   K   ++L  A  E+Y     P ++ L + SY+  +D+   + +CK 
Sbjct: 44  ENFGHRAKRARVSGK--SQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKR 101

Query: 160 AWTVTCTAAFWTRLYRR--HYTLDASLP-----LRLRPESMEKLHCLRACVIRSLY---H 209
              +      W RLY     YT     P      ++ PE  E  +  +    + LY   H
Sbjct: 102 FSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKES-FQQLYKGAH 160

Query: 210 MYEPFAARISKNPA 223
           +   FA     NPA
Sbjct: 161 VKPGFAEHFYSNPA 174


>gi|63252886 prolyl 4-hydroxylase, alpha I subunit isoform 1
           precursor [Homo sapiens]
          Length = 534

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 34/149 (22%), Positives = 52/149 (34%), Gaps = 29/149 (19%)

Query: 30  HDACSGRVTVADYADSDLAVVRSGRVKKAVANAVRQEVKSLCGLEASQVP----AEEALS 85
           HD  +G++T A Y  S  A +     +  V + +   ++ L GL+ S       A   + 
Sbjct: 366 HDPETGKLTTAQYRVSKSAWLSG--YENPVVSRINMRIQDLTGLDVSTAEELQVANYGVG 423

Query: 86  GAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSKRHKEELDGAGGEEYPMDIWLLLASYI 145
           G  EP+      DE DA +E                     G G     +  WL   S +
Sbjct: 424 GQYEPHFDFARKDEPDAFKEL--------------------GTGNR---IATWLFYMSDV 460

Query: 146 RPEDIVNFSLICKNAWTVTCTAAFWTRLY 174
                  F  +  + W    TA FW  L+
Sbjct: 461 SAGGATVFPEVGASVWPKKGTAVFWYNLF 489


>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
          Length = 754

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 63  VRQEVKSLCGLEASQVPAEEALSGAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSKRHK 122
           V++E K      +S   +      + +     DSSD   A EE   +R    +K S++HK
Sbjct: 183 VKKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSRKHK 242

Query: 123 EE-------LDGAGGEEYPMDIWLLLASYIRPEDI 150
           +E          A  E    ++     S +RPE+I
Sbjct: 243 KEKKKRKKSKKSASSESEAENLEAQPQSTVRPEEI 277


>gi|105990539 neurofilament, light polypeptide 68kDa [Homo sapiens]
          Length = 543

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 63  VRQEVKSLCGLEASQVPAEEALSGAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSKRHK 122
           V + +++    EA   P  E     GE  +  +  D+ +A+EE   E   + K++S+  K
Sbjct: 454 VEETIEAAKAEEAKDEPPSE-----GEAEE--EEKDKEEAEEEEAAEEEEAAKEESEEAK 506

Query: 123 EELDGAGGEE 132
           EE +G  GEE
Sbjct: 507 EEEEGGEGEE 516


>gi|16306595 S-phase kinase-associated protein 2 isoform 1 [Homo
           sapiens]
          Length = 424

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 19/99 (19%), Positives = 42/99 (42%)

Query: 116 KKSKRHKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYR 175
           ++ K ++E   G   +  P ++ L + S +   +++  S +CK  + +    + W  L  
Sbjct: 83  RRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDL 142

Query: 176 RHYTLDASLPLRLRPESMEKLHCLRACVIRSLYHMYEPF 214
               L   +  RL  + +    C R+ + + L   + PF
Sbjct: 143 TGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF 181


>gi|14249170 S-phase kinase-associated protein 2 isoform 2 [Homo
           sapiens]
          Length = 410

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 19/99 (19%), Positives = 42/99 (42%)

Query: 116 KKSKRHKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYR 175
           ++ K ++E   G   +  P ++ L + S +   +++  S +CK  + +    + W  L  
Sbjct: 83  RRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDL 142

Query: 176 RHYTLDASLPLRLRPESMEKLHCLRACVIRSLYHMYEPF 214
               L   +  RL  + +    C R+ + + L   + PF
Sbjct: 143 TGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF 181


>gi|16306574 F-box and leucine-rich repeat protein 5 isoform 2 [Homo
           sapiens]
          Length = 565

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 115 KKKSKRHKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLY 174
           +K  K  +      G    P ++ L + SY+ P+++   S +      +T T + W  LY
Sbjct: 64  EKSDKEAEVSEHSTGITHLPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTKTGSLWKHLY 123

Query: 175 RRHY 178
             H+
Sbjct: 124 PVHW 127


>gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [Homo
           sapiens]
          Length = 691

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 115 KKKSKRHKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLY 174
           +K  K  +      G    P ++ L + SY+ P+++   S +      +T T + W  LY
Sbjct: 190 EKSDKEAEVSEHSTGITHLPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTKTGSLWKHLY 249

Query: 175 RRHY 178
             H+
Sbjct: 250 PVHW 253


>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
           sapiens]
          Length = 678

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 11/58 (18%)

Query: 94  IDSSDEMDAQEENIHERTVSRKKKSKRHKEELDGAGGEEYPMDIWLLLASY---IRPE 148
           ++  +E+D QEE         +++ +  +EE +G+G EE P  ++L  A++   +RPE
Sbjct: 536 LEQEEEVDQQEEE--------EEEEEEEEEEEEGSGSEEKPFALFLPRATFVSSVRPE 585


>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
           sapiens]
          Length = 650

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 11/58 (18%)

Query: 94  IDSSDEMDAQEENIHERTVSRKKKSKRHKEELDGAGGEEYPMDIWLLLASY---IRPE 148
           ++  +E+D QEE         +++ +  +EE +G+G EE P  ++L  A++   +RPE
Sbjct: 536 LEQEEEVDQQEEE--------EEEEEEEEEEEEGSGSEEKPFALFLPRATFVSSVRPE 585


>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
          Length = 4753

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 185  PLRLRPESMEKLHCLRACVIRSLYHMYEP-FAARISKNPAIPESTPSTLKNSKCLL 239
            PL L P+  + L  L  C+  +L HM +   AAR+++ P++ E+     K +K  L
Sbjct: 1437 PLPLHPDLPKWLASLEKCLRLALVHMLQGCVAARLARGPSLGEALKQLPKQNKLYL 1492


>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
           sapiens]
          Length = 693

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 60  ANAVRQEVKSLCGLEASQVPAEEALSGAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSK 119
           A  +RQEV+ L G   SQV   +ALS   +     +    +  QEE + E+ V R ++ +
Sbjct: 304 AKHLRQEVEGLEGKLQSQVENNQALSLLSK-----EQKQRLQEQEEMLREQEVQRVREQE 358

Query: 120 RHKEE 124
           R  E+
Sbjct: 359 RLCEQ 363


>gi|109134347 NY-REN-58 antigen [Homo sapiens]
          Length = 701

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 36  RVTVADYADSDLAVVRSGRVKKAVANAVRQEVKSLCG-LEASQVPAEEALSGAGEPYDII 94
           ++ V   A S+  ++ S ++ K +   ++QE ++     E +Q+ AE+ L          
Sbjct: 479 QIQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKAQLEAEKTLE--------- 529

Query: 95  DSSDEMDAQEENIHERTVSRKKKSKRHKEELDGA 128
           +   +   ++  +HER   R++K  + KE+L  A
Sbjct: 530 EKQIQWLEEKHKLHERITDREEKYNQAKEKLQRA 563


>gi|109134355 NY-REN-58 antigen [Homo sapiens]
          Length = 701

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 36  RVTVADYADSDLAVVRSGRVKKAVANAVRQEVKSLCG-LEASQVPAEEALSGAGEPYDII 94
           ++ V   A S+  ++ S ++ K +   ++QE ++     E +Q+ AE+ L          
Sbjct: 479 QIQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKAQLEAEKTLE--------- 529

Query: 95  DSSDEMDAQEENIHERTVSRKKKSKRHKEELDGA 128
           +   +   ++  +HER   R++K  + KE+L  A
Sbjct: 530 EKQIQWLEEKHKLHERITDREEKYNQAKEKLQRA 563


>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
            sapiens]
          Length = 1938

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 97   SDEMDAQEENIHERTVSRKKKSKRHKEELDGAGGEE 132
            S+EM A EENI + T  +K   + H++ LD    EE
Sbjct: 983  SEEMTALEENISKLTKEKKSLQEAHQQTLDDLQVEE 1018


>gi|54112382 F-box and leucine-rich repeat protein 10 isoform a [Homo
            sapiens]
          Length = 1336

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 125  LDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICK--NAWTVTCTAAFWTRLYRRH 177
            LD         ++W+ + SY+  +D+     +C+  N W   C    WTR+   H
Sbjct: 1057 LDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRW--CCDKRLWTRIDLNH 1109


>gi|54112380 F-box and leucine-rich repeat protein 10 isoform b [Homo
            sapiens]
          Length = 1265

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 125  LDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICK--NAWTVTCTAAFWTRLYRRH 177
            LD         ++W+ + SY+  +D+     +C+  N W   C    WTR+   H
Sbjct: 988  LDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRW--CCDKRLWTRIDLNH 1040


>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
           sapiens]
          Length = 693

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 60  ANAVRQEVKSLCGLEASQVPAEEALSGAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSK 119
           A  +RQEV+ L G   SQV   +ALS   +     +    +  QEE + E+   R ++ +
Sbjct: 304 AKHLRQEVEGLEGKLQSQVENNQALSLLSK-----EQKQRLQEQEEMLREQEAQRVREQE 358

Query: 120 RHKEE 124
           R  E+
Sbjct: 359 RLCEQ 363


>gi|4557563 excision repair cross-complementing rodent repair
           deficiency, complementation group 3 [Homo sapiens]
          Length = 782

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 61  NAVRQEVKSLCGLEASQVPAEEALSGAGEPYDIIDSSDEMDAQEENIHE-RTVSRKKKSK 119
           +A+ +  +S  G   S+V   +  S    P D+ D  ++MD  EE   E +TVS + K +
Sbjct: 218 SAISKTAESSGGPSTSRVTDPQGKSDI--PMDLFDFYEQMDKDEEEEEETQTVSFEVKQE 275

Query: 120 RHKEELDGAGGEEYPMDIWLLLASYIRPEDIVN 152
             +E        EYP     LLA Y    D VN
Sbjct: 276 MIEELQKRCIHLEYP-----LLAEYDFRNDSVN 303


>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
           isoform 1 [Homo sapiens]
          Length = 693

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 60  ANAVRQEVKSLCGLEASQVPAEEALSGAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSK 119
           A  +RQEV+ L G   SQV   +ALS   +     +    +  QEE + E+   R ++ +
Sbjct: 304 AKHLRQEVEGLEGKLQSQVENNQALSLLSK-----EQKQRLQEQEEMLREQEAQRVREQE 358

Query: 120 RHKEE 124
           R  E+
Sbjct: 359 RLCEQ 363


>gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo
           sapiens]
          Length = 783

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 81  EEALSGAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSKRHKEE 124
           +E     GE Y+ I++S E + + E   ++ +  +KK ++ KE+
Sbjct: 452 DEEQDSEGETYEDIEASKEREKKREKEEKKRLELEKKEQKEKEK 495


>gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo
           sapiens]
          Length = 829

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 81  EEALSGAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSKRHKEE 124
           +E     GE Y+ I++S E + + E   ++ +  +KK ++ KE+
Sbjct: 452 DEEQDSEGETYEDIEASKEREKKREKEEKKRLELEKKEQKEKEK 495


>gi|4885307 G protein-coupled receptor 21 [Homo sapiens]
          Length = 349

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 293 CLLQVTTLNFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQ 334
           CLL+V  + F+ + I+ G I  +F  + +  + HH      Q
Sbjct: 28  CLLEVLIIVFLTVLIISGNIIVIFVFHCAPLLNHHTTSYFIQ 69


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,625,369
Number of Sequences: 37866
Number of extensions: 716161
Number of successful extensions: 2258
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2234
Number of HSP's gapped (non-prelim): 36
length of query: 376
length of database: 18,247,518
effective HSP length: 104
effective length of query: 272
effective length of database: 14,309,454
effective search space: 3892171488
effective search space used: 3892171488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.