Guide to the Human Genome
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Name: ZFP1 Sequence: fasta or formatted (407aa) NCBI GI: 119226229
Description:

zinc finger protein 1 homolog

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         15           2
 C cysteine            4.2         17           1
 D aspartate           3.4         14           2
 E glutamate           9.1         37           2
 F phenylalanine       4.9         20           2
 G glycine             4.7         19           1
 H histidine           5.4         22           1
 I isoleucine          4.9         20           2
 K lysine             10.6         43           2
 L leucine             7.6         31           2
 M methionine          1.5          6           1
 N asparagine          4.7         19           1
 P proline             3.2         13           1
 Q glutamine           5.7         23           1
 R arginine            4.9         20           1
 S serine              7.4         30           1
 T threonine           6.1         25           2
 V valine              3.4         14           1
 W tryptophan          0.5          2           1
 Y tyrosine            4.2         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 1 homolog 
ZNF569                0.469   zinc finger protein 569 
ZNF182                0.467   zinc finger protein 21 isoform 2 
ZNF182                0.465   zinc finger protein 21 isoform 1 
ZNF568                0.455   zinc finger protein 568 
ZNF334                0.455   zinc finger protein 334 isoform a 
ZNF12                 0.452   zinc finger protein 12 isoform b 
ZNF674                0.440   zinc finger family member 674 isoform 2 
ZNF674                0.440   zinc finger family member 674 isoform 1 
ZNF630                0.440   zinc finger protein 630 
ZNF189                0.434   zinc finger protein 189 isoform 1 
ZNF268                0.431   zinc finger protein 268 
ZNF157                0.429   zinc finger protein 157 
ZNF25                 0.429   zinc finger protein 25 
ZNF613                0.428   zinc finger protein 613 isoform 1 
LOC100287429          0.425   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.425   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.425   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.425   zinc finger protein 84 
ZNF84                 0.425   zinc finger protein 84 
ZNF605                0.421   zinc finger protein 605 
ZNF37A                0.420   zinc finger protein 37a 
ZNF37A                0.420   zinc finger protein 37a 
ZNF300                0.419   zinc finger protein 300 
ZNF3                  0.418   zinc finger protein 3 isoform 2 
ZNF350                0.413   zinc finger protein 350 
ZNF586                0.413   zinc finger protein 586 
ZNF649                0.407   zinc finger protein 649 
ZNF658                0.407   zinc finger protein 658 
ZNF41                 0.405   zinc finger protein 41 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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