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Search of human proteins with 119226227
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|119226227 NEDD4 binding protein 2-like 1 isoform 2 [Homo
sapiens]
(173 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|119226227 NEDD4 binding protein 2-like 1 isoform 2 [Homo sapi... 365 e-102
gi|119226224 NEDD4 binding protein 2-like 1 isoform 1 [Homo sapi... 284 2e-77
gi|31742492 Nedd4 binding protein 2 [Homo sapiens] 120 6e-28
gi|7656971 phosphonoformate immuno-associated protein 5 isoform ... 108 2e-24
gi|157278100 phosphonoformate immuno-associated protein 5 isofor... 45 4e-05
gi|94721261 2',3'-cyclic nucleotide 3' phosphodiesterase [Homo s... 44 7e-05
gi|146134388 YLP motif containing 1 [Homo sapiens] 41 6e-04
gi|189027124 nicotinamide riboside kinase 1 isoform 2 [Homo sapi... 37 0.009
gi|8923530 nicotinamide riboside kinase 1 isoform 1 [Homo sapiens] 37 0.009
gi|8923842 forkhead box J2 [Homo sapiens] 37 0.011
gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens] 37 0.011
gi|90903231 huntingtin [Homo sapiens] 35 0.032
gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens] 33 0.094
gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens] 33 0.094
gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens] 33 0.094
gi|109150431 ring finger protein 31 [Homo sapiens] 32 0.21
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 32 0.21
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 32 0.21
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 32 0.21
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens] 32 0.27
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens] 32 0.27
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 32 0.27
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 32 0.27
gi|169636435 caudal type homeobox 2 [Homo sapiens] 32 0.36
gi|5032187 transducer of ERBB2, 1 [Homo sapiens] 32 0.36
gi|66529407 tensin [Homo sapiens] 31 0.47
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 31 0.47
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 31 0.47
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 31 0.47
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 31 0.47
>gi|119226227 NEDD4 binding protein 2-like 1 isoform 2 [Homo
sapiens]
Length = 173
Score = 365 bits (938), Expect = e-102
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MEDSFLQSFGRLSLQPQQQQQRQRPPRPPPRGTPPRRHSFRKHLYLLRGLPGSGKTTLAR 60
MEDSFLQSFGRLSLQPQQQQQRQRPPRPPPRGTPPRRHSFRKHLYLLRGLPGSGKTTLAR
Sbjct: 1 MEDSFLQSFGRLSLQPQQQQQRQRPPRPPPRGTPPRRHSFRKHLYLLRGLPGSGKTTLAR 60
Query: 61 QLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAMRNGISPIIIDNTN 120
QLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAMRNGISPIIIDNTN
Sbjct: 61 QLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAMRNGISPIIIDNTN 120
Query: 121 LHAWEMKPYAVMVFQTEQKNLFRLEMDMVVFRPEMKKHSWCLKRKNPPNERTV 173
LHAWEMKPYAVMVFQTEQKNLFRLEMDMVVFRPEMKKHSWCLKRKNPPNERTV
Sbjct: 121 LHAWEMKPYAVMVFQTEQKNLFRLEMDMVVFRPEMKKHSWCLKRKNPPNERTV 173
>gi|119226224 NEDD4 binding protein 2-like 1 isoform 1 [Homo
sapiens]
Length = 243
Score = 284 bits (727), Expect = 2e-77
Identities = 134/143 (93%), Positives = 137/143 (95%)
Query: 1 MEDSFLQSFGRLSLQPQQQQQRQRPPRPPPRGTPPRRHSFRKHLYLLRGLPGSGKTTLAR 60
MEDSFLQSFGRLSLQPQQQQQRQRPPRPPPRGTPPRRHSFRKHLYLLRGLPGSGKTTLAR
Sbjct: 1 MEDSFLQSFGRLSLQPQQQQQRQRPPRPPPRGTPPRRHSFRKHLYLLRGLPGSGKTTLAR 60
Query: 61 QLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAMRNGISPIIIDNTN 120
QLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAMRNGISPIIIDNTN
Sbjct: 61 QLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAMRNGISPIIIDNTN 120
Query: 121 LHAWEMKPYAVMVFQTEQKNLFR 143
LHAWEMKPYAVM + + +FR
Sbjct: 121 LHAWEMKPYAVMALENNYEVIFR 143
>gi|31742492 Nedd4 binding protein 2 [Homo sapiens]
Length = 1770
Score = 120 bits (301), Expect = 6e-28
Identities = 62/111 (55%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Query: 44 LYLLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRA 103
L LLRGLPGSGK+ LAR LQ D P +I STDD+F+ +G Y+F+ +L EAHEWNQ RA
Sbjct: 442 LVLLRGLPGSGKSFLARTLQEDNPSGVILSTDDYFYI-NGQYQFDVKYLGEAHEWNQNRA 500
Query: 104 RKAMRNGISPIIIDNTNLHAWEMKPYAVMVFQTEQKNLFRLEMDMVVFRPE 154
++A ISPIIIDNTNL AWEMKPY + + + K LFR F+P+
Sbjct: 501 KEAFEKKISPIIIDNTNLQAWEMKPYVALSQKHKYKVLFREPDTWWKFKPK 551
>gi|7656971 phosphonoformate immuno-associated protein 5 isoform 2
[Homo sapiens]
Length = 583
Score = 108 bits (271), Expect = 2e-24
Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 38 HSFRKHLYLLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHE 97
+ +K L LLRGLPGSGKTTL+R L ++FSTDD+F +DG Y +N + L +AH+
Sbjct: 398 NKLQKLLILLRGLPGSGKTTLSRILLGQNRDGIVFSTDDYFHHQDG-YRYNVNQLGDAHD 456
Query: 98 WNQKRARKAMRNGISPIIIDNTNLHAWEMKPY 129
WNQ RA++A+ G SP+IIDNTN+ AWEMKPY
Sbjct: 457 WNQNRAKQAIDQGRSPVIIDNTNIQAWEMKPY 488
>gi|157278100 phosphonoformate immuno-associated protein 5 isoform 1
[Homo sapiens]
Length = 752
Score = 44.7 bits (104), Expect = 4e-05
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 103 ARKAMRNGISPIIIDNTNLHAWEMKPY 129
A++A+ G SP+IIDNTN+ AWEMKPY
Sbjct: 33 AKQAIDQGRSPVIIDNTNIQAWEMKPY 59
>gi|94721261 2',3'-cyclic nucleotide 3' phosphodiesterase [Homo
sapiens]
Length = 421
Score = 43.9 bits (102), Expect = 7e-05
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 42 KHLYLLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQK 101
K L++LRGLPGSGK+TLAR + + + D + GA F EE ++
Sbjct: 50 KTLFILRGLPGSGKSTLARVIVDKYRDGTKMVSADAYKITPGA---RGAFSEEYKRLDED 106
Query: 102 RARKAMRNGISPIIIDNTNLHAWEMK-------PYAVMVFQTEQKNLFRLEMDMVVFRPE 154
A R I +++D+TN ++ Y V E K +RL+ + + +
Sbjct: 107 LAAYCRRRDIRILVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNQ 166
Query: 155 MKKHSWCLKRKNPPNER 171
+ + LK+ P E+
Sbjct: 167 WQLSADDLKKLKPGLEK 183
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 40.8 bits (94), Expect = 6e-04
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 36/136 (26%)
Query: 12 LSLQPQQQQQRQRPP---------RPPPRGTPPRRHSFRKHLYLLRGLPGSGKTTLA--- 59
LS QP + ++ P +PP R + P R + ++RGLPGSGKT +A
Sbjct: 1800 LSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERI-----VVIMRGLPGSGKTHVAKLI 1854
Query: 60 --RQLQHDFPRALIFSTDDFFFREDGAYEFNPDF----------------LEEAHEWNQ- 100
++++ P + S DD+F E E +PD +EE + +
Sbjct: 1855 RDKEVEFGGPAPRVLSLDDYFITEVEKEEKDPDSGKKVKKKVMEYEYEAEMEETYRTSMF 1914
Query: 101 KRARKAMRNGISPIII 116
K +K + +G P II
Sbjct: 1915 KTFKKTLDDGFFPFII 1930
>gi|189027124 nicotinamide riboside kinase 1 isoform 2 [Homo
sapiens]
Length = 175
Score = 37.0 bits (84), Expect = 0.009
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 47 LRGLPGSGKTTLARQLQHDFPRALIFSTDDFF 78
+ G+ SGKTTLA+ LQ P + S DDFF
Sbjct: 8 ISGVTNSGKTTLAKNLQKHLPNCSVISQDDFF 39
>gi|8923530 nicotinamide riboside kinase 1 isoform 1 [Homo
sapiens]
Length = 199
Score = 37.0 bits (84), Expect = 0.009
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 47 LRGLPGSGKTTLARQLQHDFPRALIFSTDDFF 78
+ G+ SGKTTLA+ LQ P + S DDFF
Sbjct: 8 ISGVTNSGKTTLAKNLQKHLPNCSVISQDDFF 39
>gi|8923842 forkhead box J2 [Homo sapiens]
Length = 574
Score = 36.6 bits (83), Expect = 0.011
Identities = 13/22 (59%), Positives = 20/22 (90%)
Query: 16 PQQQQQRQRPPRPPPRGTPPRR 37
PQQQQQ+Q+PP+PPP+ + P++
Sbjct: 298 PQQQQQQQQPPQPPPQQSQPQQ 319
>gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens]
Length = 581
Score = 36.6 bits (83), Expect = 0.011
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 6 LQSFGRLSLQPQQQQQRQRPPRPPPRGTPPR 36
L GRLS QQQQQ+Q+PP PPP P R
Sbjct: 169 LVPLGRLSRGEQQQQQQQQPPPPPPPPGPLR 199
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 35.0 bits (79), Expect = 0.032
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 15 QPQQQQQRQRPPRPPPRGTPPR 36
Q QQQQQ+Q+PP PPP PP+
Sbjct: 31 QQQQQQQQQQPPPPPPPPPPPQ 52
Score = 31.6 bits (70), Expect = 0.36
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 15 QPQQQQQRQRPPRPPPRGTPP 35
Q QQQQQ+Q+ P PPP PP
Sbjct: 30 QQQQQQQQQQQPPPPPPPPPP 50
Score = 29.6 bits (65), Expect = 1.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 15 QPQQQQQRQRPPRPPPRGTPP 35
Q QQQQQ+Q+ +PPP PP
Sbjct: 28 QQQQQQQQQQQQQPPPPPPPP 48
>gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]
Length = 1179
Score = 33.5 bits (75), Expect = 0.094
Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 QPQQQQQRQRPPRPP-PRGTPPRR 37
Q QQQQQ+ +PP+PP P G PP R
Sbjct: 77 QQQQQQQQPQPPQPPFPAGGPPAR 100
>gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens]
Length = 1192
Score = 33.5 bits (75), Expect = 0.094
Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 QPQQQQQRQRPPRPP-PRGTPPRR 37
Q QQQQQ+ +PP+PP P G PP R
Sbjct: 77 QQQQQQQQPQPPQPPFPAGGPPAR 100
>gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens]
Length = 1203
Score = 33.5 bits (75), Expect = 0.094
Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 QPQQQQQRQRPPRPP-PRGTPPRR 37
Q QQQQQ+ +PP+PP P G PP R
Sbjct: 77 QQQQQQQQPQPPQPPFPAGGPPAR 100
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 32.3 bits (72), Expect = 0.21
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 6 LQSFGRLSLQPQQQQQRQRPPRPPPRGTPPRRHSFRKHLYLLRGLPGSGKTTLARQLQHD 65
L R L+P +Q+ P P P P + S + L + LP G+ LA L +
Sbjct: 609 LTELQRQRLEPFRQRLWDSGPEPTPSWDGPDKQSLVRRLLAVYALPSWGRAELALSLLQE 668
Query: 66 FPR 68
PR
Sbjct: 669 TPR 671
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 32.3 bits (72), Expect = 0.21
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 15 QPQQQQQRQRPP--RPPPRGTPPR--RHSFRKHLYLLRGLPGSGKTTLARQLQHDFPR 68
QPQQQQQ+Q PP +PPP P+ R+ R+ R G+ + ++++D R
Sbjct: 936 QPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRER 993
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 [Homo
sapiens]
Length = 1132
Score = 32.3 bits (72), Expect = 0.21
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 15 QPQQQQQRQRPP--RPPPRGTPPR--RHSFRKHLYLLRGLPGSGKTTLARQLQHDFPR 68
QPQQQQQ+Q PP +PPP P+ R+ R+ R G+ + ++++D R
Sbjct: 943 QPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRER 1000
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [Homo
sapiens]
Length = 1147
Score = 32.3 bits (72), Expect = 0.21
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 15 QPQQQQQRQRPP--RPPPRGTPPR--RHSFRKHLYLLRGLPGSGKTTLARQLQHDFPR 68
QPQQQQQ+Q PP +PPP P+ R+ R+ R G+ + ++++D R
Sbjct: 958 QPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRER 1015
>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
Length = 429
Score = 32.0 bits (71), Expect = 0.27
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 15 QPQQQQQRQRPPRPPPRGTPPR 36
Q QQQQQ+Q PP P P+ PP+
Sbjct: 344 QQQQQQQQQPPPPPQPQPQPPQ 365
Score = 30.0 bits (66), Expect = 1.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 15 QPQQQQQRQRPPRPPPRGTP 34
Q QQQQQ+Q+ P PPP+ P
Sbjct: 342 QQQQQQQQQQQPPPPPQPQP 361
>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
Length = 437
Score = 32.0 bits (71), Expect = 0.27
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 15 QPQQQQQRQRPPRPPPRGTPPR 36
Q QQQQQ+Q PP P P+ PP+
Sbjct: 352 QQQQQQQQQPPPPPQPQPQPPQ 373
Score = 30.0 bits (66), Expect = 1.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 15 QPQQQQQRQRPPRPPPRGTP 34
Q QQQQQ+Q+ P PPP+ P
Sbjct: 350 QQQQQQQQQQQPPPPPQPQP 369
>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
Length = 497
Score = 32.0 bits (71), Expect = 0.27
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 15 QPQQQQQRQRPPRPPPRGTPPR 36
Q QQQQQ+Q PP P P+ PP+
Sbjct: 412 QQQQQQQQQPPPPPQPQPQPPQ 433
Score = 30.0 bits (66), Expect = 1.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 15 QPQQQQQRQRPPRPPPRGTP 34
Q QQQQQ+Q+ P PPP+ P
Sbjct: 410 QQQQQQQQQQQPPPPPQPQP 429
>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
Length = 499
Score = 32.0 bits (71), Expect = 0.27
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 15 QPQQQQQRQRPPRPPPRGTPPR 36
Q QQQQQ+Q PP P P+ PP+
Sbjct: 414 QQQQQQQQQPPPPPQPQPQPPQ 435
Score = 30.0 bits (66), Expect = 1.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 15 QPQQQQQRQRPPRPPPRGTP 34
Q QQQQQ+Q+ P PPP+ P
Sbjct: 412 QQQQQQQQQQQPPPPPQPQP 431
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 31.6 bits (70), Expect = 0.36
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 7 QSFGRLSLQPQQQQQRQRPPRPPPRGTPPR 36
+ + LQ QQQQQ +PP PPP+ P+
Sbjct: 242 RKINKKKLQQQQQQQPPQPPPPPPQPPQPQ 271
>gi|5032187 transducer of ERBB2, 1 [Homo sapiens]
Length = 345
Score = 31.6 bits (70), Expect = 0.36
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 4 SFLQSFGRLSLQPQQQ-QQRQRPPRPPPRGTPPRRHSFRK 42
S + S L L QQQ QQ+Q+P +PPP PP++ +K
Sbjct: 224 SSMHSLYGLGLGSQQQPQQQQQPAQPPPPPPPPQQQQQQK 263
>gi|66529407 tensin [Homo sapiens]
Length = 1735
Score = 31.2 bits (69), Expect = 0.47
Identities = 12/15 (80%), Positives = 14/15 (93%)
Query: 17 QQQQQRQRPPRPPPR 31
QQQQQ+Q+ PRPPPR
Sbjct: 651 QQQQQQQQQPRPPPR 665
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 31.2 bits (69), Expect = 0.47
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 15 QPQQQQQ---RQRPPRPPPRGTPPRRHSFRKHLY----LLRGLPGSGKT 56
QPQQQ Q +Q PP PPP+ PP + + ++ +P SG T
Sbjct: 1678 QPQQQPQPQPQQPPPPPPPQQQPPLSQCSMNNSFTPAPMIMEIPESGST 1726
Score = 26.9 bits (58), Expect = 8.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 15 QPQQQQQRQRPPRPPPRGTPP 35
+P QQ+Q PP PP + PP
Sbjct: 1642 RPPSNQQQQPPPPPPQQPQPP 1662
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 31.2 bits (69), Expect = 0.47
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 15 QPQQQQQ---RQRPPRPPPRGTPPRRHSFRKHLY----LLRGLPGSGKT 56
QPQQQ Q +Q PP PPP+ PP + + ++ +P SG T
Sbjct: 1678 QPQQQPQPQPQQPPPPPPPQQQPPLSQCSMNNSFTPAPMIMEIPESGST 1726
Score = 26.9 bits (58), Expect = 8.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 15 QPQQQQQRQRPPRPPPRGTPP 35
+P QQ+Q PP PP + PP
Sbjct: 1642 RPPSNQQQQPPPPPPQQPQPP 1662
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 31.2 bits (69), Expect = 0.47
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 15 QPQQQQQ---RQRPPRPPPRGTPPRRHSFRKHLY----LLRGLPGSGKT 56
QPQQQ Q +Q PP PPP+ PP + + ++ +P SG T
Sbjct: 1678 QPQQQPQPQPQQPPPPPPPQQQPPLSQCSMNNSFTPAPMIMEIPESGST 1726
Score = 26.9 bits (58), Expect = 8.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 15 QPQQQQQRQRPPRPPPRGTPP 35
+P QQ+Q PP PP + PP
Sbjct: 1642 RPPSNQQQQPPPPPPQQPQPP 1662
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 31.2 bits (69), Expect = 0.47
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 16 PQQQQQRQRP----PRPPPRGTPP 35
PQQQQQ+Q+P P PPP PP
Sbjct: 3196 PQQQQQQQQPQVQQPPPPPAAQPP 3219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,483,293
Number of Sequences: 37866
Number of extensions: 436525
Number of successful extensions: 4382
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 3651
Number of HSP's gapped (non-prelim): 563
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.