Guide to the Human Genome
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Name: NR1I3 Sequence: fasta or formatted (306aa) NCBI GI: 117938748
Description:

constitutive androstane receptor isoform 14

Referenced in:

Nuclear Receptors

Other entries for this name:
alt prot [340aa] constitutive androstane receptor isoform 6
alt prot [280aa] constitutive androstane receptor isoform 11
alt prot [309aa] constitutive androstane receptor isoform 5
alt prot [324aa] constitutive androstane receptor isoform 9
alt prot [315aa] constitutive androstane receptor isoform 12
alt prot [296aa] constitutive androstane receptor isoform 8
alt prot [267aa] constitutive androstane receptor isoform 15
alt prot [311aa] constitutive androstane receptor isoform 13
alt prot [339aa] constitutive androstane receptor isoform 7
alt prot [319aa] constitutive androstane receptor isoform 10
alt prot [352aa] constitutive androstane receptor isoform 2
alt prot [314aa] constitutive androstane receptor isoform 4
alt prot [357aa] constitutive androstane receptor isoform 1
alt prot [348aa] constitutive androstane receptor isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         21           2
 C cysteine            2.6          8           1
 D aspartate           3.3         10           1
 E glutamate           5.2         16           2
 F phenylalanine       5.2         16           1
 G glycine             5.9         18           1
 H histidine           3.6         11           2
 I isoleucine          4.9         15           1
 K lysine              4.9         15           1
 L leucine            12.4         38           2
 M methionine          2.9          9           1
 N asparagine          1.0          3           1
 P proline             7.2         22           2
 Q glutamine           8.5         26           2
 R arginine            7.8         24           2
 S serine              4.6         14           1
 T threonine           6.2         19           2
 V valine              4.9         15           1
 W tryptophan          1.0          3           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   constitutive androstane receptor isoform 14 
NR1I3                 0.990   constitutive androstane receptor isoform 13 
NR1I3                 0.980   constitutive androstane receptor isoform 12 
NR1I3                 0.972   constitutive androstane receptor isoform 7 
NR1I3                 0.970   constitutive androstane receptor isoform 6 
NR1I3                 0.890   constitutive androstane receptor isoform 10 
NR1I3                 0.880   constitutive androstane receptor isoform 9 
NR1I3                 0.870   constitutive androstane receptor isoform 3 
NR1I3                 0.861   constitutive androstane receptor isoform 2 
NR1I3                 0.849   constitutive androstane receptor isoform 1 
NR1I3                 0.841   constitutive androstane receptor isoform 15 
NR1I3                 0.821   constitutive androstane receptor isoform 8 
NR1I3                 0.729   constitutive androstane receptor isoform 11 
NR1I3                 0.714   constitutive androstane receptor isoform 4 
NR1I3                 0.711   constitutive androstane receptor isoform 5 
NR1I2                 0.324   nuclear receptor subfamily 1, group I, member 2 isof...
NR1I2                 0.306   nuclear receptor subfamily 1, group I, member 2 isof...
NR1I2                 0.306   nuclear receptor subfamily 1, group I, member 2 isof...
NR1H3                 0.171   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.171   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H2                 0.147   nuclear receptor subfamily 1, group H, member 2 [Hom...
THRB                  0.144   thyroid hormone receptor, beta 
THRB                  0.144   thyroid hormone receptor, beta 
THRB                  0.144   thyroid hormone receptor, beta 
VDR                   0.139   vitamin D (1,25-dihydroxyvitamin D3) receptor 
VDR                   0.139   vitamin D (1,25-dihydroxyvitamin D3) receptor 
THRA                  0.130   thyroid hormone receptor, alpha isoform 1 
THRA                  0.130   thyroid hormone receptor, alpha isoform 2 
RARG                  0.127   retinoic acid receptor, gamma isoform 2 
RARG                  0.127   retinoic acid receptor, gamma isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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